Wall clock time and date at job start Sat Apr 11 2020 03:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 119.99871 * 2 1 4 4 H 1.48491 * 109.47214 * 270.00149 * 3 2 1 5 5 H 1.48499 * 109.46835 * 30.00442 * 3 2 1 6 6 H 1.48501 * 109.46640 * 150.00140 * 3 2 1 7 7 C 1.38810 * 119.99829 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00032 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00148 * 359.97438 * 7 2 1 10 10 C 1.46498 * 120.00215 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47433 * 185.01805 * 10 9 7 12 12 H 1.09000 * 109.99700 * 306.32372 * 11 10 9 13 13 C 1.54312 * 109.77709 * 67.47820 * 11 10 9 14 14 C 1.55160 * 102.86532 * 141.88729 * 13 11 10 15 15 C 1.54908 * 101.58081 * 324.30787 * 14 13 11 16 16 N 1.47016 * 109.88599 * 185.22897 * 11 10 9 17 17 C 1.34783 * 125.64588 * 61.67387 * 16 11 10 18 18 O 1.21273 * 119.99889 * 354.79701 * 17 16 11 19 19 C 1.50703 * 119.99832 * 174.79256 * 17 16 11 20 20 C 1.50703 * 109.46716 * 180.02562 * 19 17 16 21 21 C 1.38632 * 120.32292 * 90.00600 * 20 19 17 22 22 C 1.38581 * 118.48908 * 179.72362 * 21 20 19 23 23 C 1.39317 * 119.05701 * 359.97438 * 22 21 20 24 24 C 1.48170 * 119.72035 * 179.97438 * 23 22 21 25 25 N 1.34776 * 120.00092 * 180.02562 * 24 23 22 26 26 O 1.21512 * 120.00291 * 359.97438 * 24 23 22 27 27 N 1.32717 * 120.55513 * 0.02562 * 23 22 21 28 28 C 1.31521 * 121.64069 * 359.97438 * 27 23 22 29 29 H 0.97004 * 119.99902 * 359.97438 * 1 2 3 30 30 H 0.97002 * 119.99824 * 0.02562 * 9 7 2 31 31 H 1.08994 * 109.47731 * 65.01336 * 10 9 7 32 32 H 1.09009 * 109.46909 * 305.01225 * 10 9 7 33 33 H 1.09009 * 110.92542 * 23.47313 * 13 11 10 34 34 H 1.09000 * 110.74741 * 260.22408 * 13 11 10 35 35 H 1.09000 * 111.00450 * 206.22928 * 14 13 11 36 36 H 1.09003 * 111.03526 * 82.39176 * 14 13 11 37 37 H 1.09009 * 110.36317 * 278.16855 * 15 14 13 38 38 H 1.08997 * 110.46110 * 155.89732 * 15 14 13 39 39 H 1.08997 * 109.46940 * 60.00238 * 19 17 16 40 40 H 1.08997 * 109.47006 * 300.00158 * 19 17 16 41 41 H 1.08004 * 120.75397 * 359.73623 * 21 20 19 42 42 H 1.08002 * 120.47510 * 180.02562 * 22 21 20 43 43 H 0.97000 * 119.99488 * 359.97438 * 25 24 23 44 44 H 0.96993 * 120.00300 * 180.02562 * 25 24 23 45 45 H 1.07999 * 119.54664 * 180.02562 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0686 -4.8169 -0.1267 12 1 0.3045 -4.7410 0.6469 13 6 0.4104 -4.7924 -1.5222 14 6 0.3093 -6.2981 -1.8830 15 6 1.6103 -6.8565 -1.2544 16 7 1.7806 -6.0971 -0.0023 17 6 2.4700 -6.5106 1.0796 18 8 2.6193 -5.7654 2.0246 19 6 3.0551 -7.8990 1.1148 20 6 3.7703 -8.1095 2.4245 21 6 3.0904 -8.6215 3.5188 22 6 3.7867 -8.8051 4.7029 23 6 5.1383 -8.4710 4.7518 24 6 5.8968 -8.6608 6.0105 25 7 7.2044 -8.3389 6.0643 26 8 5.3396 -9.1057 6.9944 27 7 5.7519 -7.9833 3.6809 28 6 5.1152 -7.7990 2.5449 29 1 -0.4850 0.8401 0.0004 30 1 0.3555 -2.3880 -0.0005 31 1 2.6156 -3.7545 0.9309 32 1 2.7503 -3.6766 -0.8423 33 1 1.0390 -4.2652 -2.2400 34 1 -0.5801 -4.3400 -1.4741 35 1 0.3046 -6.4414 -2.9635 36 1 -0.5708 -6.7515 -1.4270 37 1 2.4567 -6.6858 -1.9197 38 1 1.5045 -7.9203 -1.0416 39 1 3.7604 -8.0170 0.2922 40 1 2.2553 -8.6329 1.0159 41 1 2.0421 -8.8719 3.4500 42 1 3.2888 -9.2023 5.5751 43 1 7.6491 -7.9834 5.2789 44 1 7.7011 -8.4635 6.8881 45 1 5.6480 -7.4003 1.6943 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324182438.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:06:08 Heat of formation + Delta-G solvation = -22.810524 kcal Electronic energy + Delta-G solvation = -27720.792571 eV Core-core repulsion = 23738.379839 eV Total energy + Delta-G solvation = -3982.412732 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.99324 -40.07373 -38.99590 -37.44395 -34.56668 -34.30141 -33.45229 -32.28546 -31.68313 -31.32655 -29.06630 -28.19973 -25.14233 -24.44368 -23.83477 -22.88572 -22.03419 -21.24025 -20.59870 -18.95907 -18.48522 -17.52025 -17.37697 -16.76001 -16.59524 -16.23425 -15.68209 -15.28842 -15.23017 -14.78887 -14.53159 -14.42403 -14.01419 -13.75780 -13.58245 -13.43691 -13.32365 -13.15239 -12.90388 -12.80784 -12.37669 -12.20484 -12.04617 -11.48302 -11.21001 -10.92632 -10.82338 -10.69139 -10.59037 -10.47613 -10.18025 -10.04135 -9.98530 -9.88179 -9.82527 -9.65810 -9.24259 -8.81723 -8.51339 -6.87783 -5.73484 -3.01510 0.34739 0.98015 2.43448 2.65481 2.98979 3.12463 3.45938 3.51328 3.53571 3.62847 3.93269 4.28926 4.44181 4.46839 4.54941 4.61529 4.64618 4.67962 4.88766 4.89955 5.01324 5.11027 5.23447 5.34322 5.37692 5.45950 5.52799 5.60319 5.69722 5.76714 5.84997 5.88495 6.01148 6.05236 6.15857 6.27275 6.39189 6.45857 6.52025 6.79950 6.98727 7.02048 7.47680 7.59458 7.73965 7.94992 8.22556 8.45615 9.56496 10.13177 10.48508 11.49640 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011136 B = 0.002724 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2513.662430 B =10277.923627 C =12187.482314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.234 4.234 8 H 0.069 0.931 9 N -0.729 5.729 10 C 0.146 3.854 11 C 0.131 3.869 12 H 0.075 0.925 13 C -0.120 4.120 14 C -0.135 4.135 15 C 0.098 3.902 16 N -0.613 5.613 17 C 0.524 3.476 18 O -0.519 6.519 19 C -0.098 4.098 20 C -0.087 4.087 21 C -0.068 4.068 22 C -0.106 4.106 23 C 0.066 3.934 24 C 0.581 3.419 25 N -0.836 5.836 26 O -0.539 6.539 27 N -0.457 5.457 28 C 0.115 3.885 29 H 0.254 0.746 30 H 0.383 0.617 31 H 0.034 0.966 32 H 0.019 0.981 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.142 0.858 42 H 0.149 0.851 43 H 0.412 0.588 44 H 0.404 0.596 45 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.585 -24.430 -0.524 25.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.365 4.365 8 H 0.087 0.913 9 N -0.373 5.373 10 C 0.018 3.982 11 C 0.028 3.972 12 H 0.093 0.907 13 C -0.158 4.158 14 C -0.173 4.173 15 C -0.025 4.025 16 N -0.348 5.348 17 C 0.312 3.688 18 O -0.394 6.394 19 C -0.138 4.138 20 C -0.089 4.089 21 C -0.093 4.093 22 C -0.127 4.127 23 C -0.072 4.072 24 C 0.364 3.636 25 N -0.399 5.399 26 O -0.415 6.415 27 N -0.168 5.168 28 C -0.045 4.045 29 H 0.064 0.936 30 H 0.216 0.784 31 H 0.052 0.948 32 H 0.037 0.963 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.126 0.874 40 H 0.125 0.875 41 H 0.160 0.840 42 H 0.166 0.834 43 H 0.243 0.757 44 H 0.235 0.765 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 8.248 -24.023 0.719 25.410 hybrid contribution -0.367 0.985 -0.273 1.086 sum 7.881 -23.039 0.445 24.354 Atomic orbital electron populations 1.69658 1.05072 1.25579 1.58106 1.24717 0.95541 0.97613 1.03181 0.86179 0.78721 0.83832 0.77441 1.21764 1.21763 1.20768 1.19202 0.90996 0.84027 1.42265 0.91303 1.42201 1.05720 0.99750 1.89657 1.20974 0.93344 0.85069 0.98848 1.21832 0.94535 0.83127 0.97696 0.90677 1.22665 1.02188 0.95188 0.95779 1.22803 0.96820 0.96726 1.00975 1.22353 0.98538 0.95741 0.85824 1.48541 1.52382 1.19440 1.14421 1.19970 0.78593 0.88476 0.81789 1.90809 1.57621 1.55707 1.35230 1.20659 1.01233 0.95998 0.95941 1.20565 0.95258 0.97437 0.95685 1.21480 1.00356 0.95903 0.91609 1.22067 0.93866 0.97678 0.99050 1.20992 0.92575 1.00478 0.93136 1.17879 0.82235 0.76947 0.86524 1.43632 1.10726 1.67293 1.18235 1.90826 1.69348 1.45503 1.35868 1.67488 1.39454 1.10684 0.99147 1.22596 0.91387 0.95434 0.95116 0.93570 0.78382 0.94778 0.96278 0.89880 0.89783 0.89964 0.90805 0.91169 0.90851 0.87369 0.87515 0.84022 0.83372 0.75722 0.76490 0.82026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.62 13.06 55.49 0.72 -27.89 16 2 C -0.01 -0.44 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 22.93 29.55 -169.99 -5.02 17.91 16 4 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 5 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 6 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.23 -6.75 9.99 -15.06 -0.15 -6.90 16 8 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 9 N -0.73 -18.97 5.41 -59.91 -0.32 -19.30 16 10 C 0.15 3.13 5.66 -4.04 -0.02 3.11 16 11 C 0.13 2.16 2.95 -66.96 -0.20 1.97 16 12 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 13 C -0.12 -1.64 6.23 -24.90 -0.16 -1.80 16 14 C -0.14 -1.23 7.08 -24.58 -0.17 -1.41 16 15 C 0.10 0.85 6.74 -2.53 -0.02 0.83 16 16 N -0.61 -7.96 3.07 -163.03 -0.50 -8.46 16 17 C 0.52 7.11 7.66 -10.98 -0.08 7.03 16 18 O -0.52 -9.76 14.82 5.56 0.08 -9.68 16 19 C -0.10 -0.80 4.78 -29.03 -0.14 -0.94 16 20 C -0.09 -0.87 4.40 -104.36 -0.46 -1.33 16 21 C -0.07 -0.67 9.85 -39.31 -0.39 -1.06 16 22 C -0.11 -1.16 9.63 -39.05 -0.38 -1.54 16 23 C 0.07 0.79 6.75 -83.00 -0.56 0.23 16 24 C 0.58 6.88 8.08 -12.18 -0.10 6.78 16 25 N -0.84 -6.82 8.86 30.60 0.27 -6.55 16 26 O -0.54 -7.91 17.16 5.36 0.09 -7.81 16 27 N -0.46 -5.20 9.54 -9.80 -0.09 -5.30 16 28 C 0.11 1.20 10.86 -17.57 -0.19 1.01 16 29 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 30 H 0.38 10.28 7.61 -40.82 -0.31 9.97 16 31 H 0.03 0.83 6.55 -51.93 -0.34 0.49 16 32 H 0.02 0.41 8.02 -51.92 -0.42 0.00 16 33 H 0.08 1.24 7.77 -51.92 -0.40 0.84 16 34 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 38 H 0.07 0.41 7.47 -51.93 -0.39 0.03 16 39 H 0.11 0.61 8.09 -51.93 -0.42 0.19 16 40 H 0.11 0.59 7.90 -51.93 -0.41 0.18 16 41 H 0.14 1.07 8.06 -52.48 -0.42 0.65 16 42 H 0.15 1.50 7.64 -52.49 -0.40 1.10 16 43 H 0.41 2.84 8.16 -40.82 -0.33 2.51 16 44 H 0.40 2.49 8.93 -40.82 -0.36 2.12 16 45 H 0.16 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 380.06 15.07 5.73 5.73 Total: -1.00 -37.92 380.06 -8.44 -46.36 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -6.29 Total: 9.54 kcal Atomic # 6 Polarization: 8.55 SS G_CDS: -3.11 Total: 5.45 kcal Atomic # 7 Polarization: -67.57 SS G_CDS: 0.08 Total: -67.49 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: 0.17 Total: -17.49 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.02 Total: 17.91 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -37.92 -8.44 -46.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324182438.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.554 kcal (2) G-P(sol) polarization free energy of solvation -37.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds