Wall clock time and date at job start Sat Apr 11 2020 03:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 119.99871 * 2 1 4 4 H 1.48491 * 109.47214 * 270.00149 * 3 2 1 5 5 H 1.48499 * 109.46835 * 30.00442 * 3 2 1 6 6 H 1.48501 * 109.46640 * 150.00140 * 3 2 1 7 7 C 1.38810 * 119.99829 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00032 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00148 * 359.97438 * 7 2 1 10 10 C 1.46498 * 120.00215 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47433 * 185.01805 * 10 9 7 12 12 H 1.09000 * 109.99700 * 306.32372 * 11 10 9 13 13 C 1.54312 * 109.77709 * 67.47820 * 11 10 9 14 14 C 1.55160 * 102.86532 * 141.88729 * 13 11 10 15 15 C 1.54908 * 101.58081 * 324.30787 * 14 13 11 16 16 N 1.47016 * 109.88599 * 185.22897 * 11 10 9 17 17 C 1.34783 * 125.64588 * 61.67387 * 16 11 10 18 18 O 1.21273 * 119.99889 * 354.79701 * 17 16 11 19 19 C 1.50703 * 119.99832 * 174.79256 * 17 16 11 20 20 C 1.50703 * 109.46716 * 180.02562 * 19 17 16 21 21 C 1.38632 * 120.32292 * 90.00600 * 20 19 17 22 22 C 1.38581 * 118.48908 * 179.72362 * 21 20 19 23 23 C 1.39317 * 119.05701 * 359.97438 * 22 21 20 24 24 C 1.48170 * 119.72035 * 179.97438 * 23 22 21 25 25 N 1.34776 * 120.00092 * 180.02562 * 24 23 22 26 26 O 1.21512 * 120.00291 * 359.97438 * 24 23 22 27 27 N 1.32717 * 120.55513 * 0.02562 * 23 22 21 28 28 C 1.31521 * 121.64069 * 359.97438 * 27 23 22 29 29 H 0.97004 * 119.99902 * 359.97438 * 1 2 3 30 30 H 0.97002 * 119.99824 * 0.02562 * 9 7 2 31 31 H 1.08994 * 109.47731 * 65.01336 * 10 9 7 32 32 H 1.09009 * 109.46909 * 305.01225 * 10 9 7 33 33 H 1.09009 * 110.92542 * 23.47313 * 13 11 10 34 34 H 1.09000 * 110.74741 * 260.22408 * 13 11 10 35 35 H 1.09000 * 111.00450 * 206.22928 * 14 13 11 36 36 H 1.09003 * 111.03526 * 82.39176 * 14 13 11 37 37 H 1.09009 * 110.36317 * 278.16855 * 15 14 13 38 38 H 1.08997 * 110.46110 * 155.89732 * 15 14 13 39 39 H 1.08997 * 109.46940 * 60.00238 * 19 17 16 40 40 H 1.08997 * 109.47006 * 300.00158 * 19 17 16 41 41 H 1.08004 * 120.75397 * 359.73623 * 21 20 19 42 42 H 1.08002 * 120.47510 * 180.02562 * 22 21 20 43 43 H 0.97000 * 119.99488 * 359.97438 * 25 24 23 44 44 H 0.96993 * 120.00300 * 180.02562 * 25 24 23 45 45 H 1.07999 * 119.54664 * 180.02562 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0686 -4.8169 -0.1267 12 1 0.3045 -4.7410 0.6469 13 6 0.4104 -4.7924 -1.5222 14 6 0.3093 -6.2981 -1.8830 15 6 1.6103 -6.8565 -1.2544 16 7 1.7806 -6.0971 -0.0023 17 6 2.4700 -6.5106 1.0796 18 8 2.6193 -5.7654 2.0246 19 6 3.0551 -7.8990 1.1148 20 6 3.7703 -8.1095 2.4245 21 6 3.0904 -8.6215 3.5188 22 6 3.7867 -8.8051 4.7029 23 6 5.1383 -8.4710 4.7518 24 6 5.8968 -8.6608 6.0105 25 7 7.2044 -8.3389 6.0643 26 8 5.3396 -9.1057 6.9944 27 7 5.7519 -7.9833 3.6809 28 6 5.1152 -7.7990 2.5449 29 1 -0.4850 0.8401 0.0004 30 1 0.3555 -2.3880 -0.0005 31 1 2.6156 -3.7545 0.9309 32 1 2.7503 -3.6766 -0.8423 33 1 1.0390 -4.2652 -2.2400 34 1 -0.5801 -4.3400 -1.4741 35 1 0.3046 -6.4414 -2.9635 36 1 -0.5708 -6.7515 -1.4270 37 1 2.4567 -6.6858 -1.9197 38 1 1.5045 -7.9203 -1.0416 39 1 3.7604 -8.0170 0.2922 40 1 2.2553 -8.6329 1.0159 41 1 2.0421 -8.8719 3.4500 42 1 3.2888 -9.2023 5.5751 43 1 7.6491 -7.9834 5.2789 44 1 7.7011 -8.4635 6.8881 45 1 5.6480 -7.4003 1.6943 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324182438.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:06:07 Heat of formation + Delta-G solvation = -53.021903 kcal Electronic energy + Delta-G solvation = -27722.102635 eV Core-core repulsion = 23738.379839 eV Total energy + Delta-G solvation = -3983.722796 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.83329 -41.10202 -39.89878 -38.57111 -36.42312 -35.18486 -34.31156 -33.47074 -33.02711 -32.49759 -30.46279 -29.14030 -26.72252 -25.46209 -24.76222 -24.29300 -23.28504 -22.10667 -21.65517 -20.16540 -19.29868 -19.08894 -18.34093 -18.05651 -17.56609 -17.11079 -16.67393 -16.39700 -16.18904 -16.03839 -15.83223 -15.56237 -15.17341 -15.06051 -14.98682 -14.73875 -14.39103 -14.16838 -14.03956 -13.70933 -13.51061 -13.30976 -12.96118 -12.90506 -12.79253 -12.67129 -12.22292 -12.00473 -11.91611 -11.77621 -11.62313 -11.55299 -11.12274 -10.94764 -10.81168 -10.76873 -10.66898 -10.06529 -9.62431 -9.04869 -7.99559 -5.29011 -0.47866 0.20587 1.43397 1.46144 1.54410 1.55941 1.66329 2.02451 2.33419 2.53640 2.79979 3.17851 3.33244 3.52859 3.60537 3.70943 3.78998 3.90480 3.94348 3.95703 4.01749 4.14043 4.19734 4.34894 4.39881 4.49893 4.56933 4.65304 4.72052 4.80729 4.88973 4.95134 4.99563 5.08502 5.12593 5.17991 5.20017 5.38305 5.43206 5.49442 5.53235 5.74601 6.21128 6.22308 6.62570 6.68910 7.16466 7.21889 7.28721 8.01289 8.27513 9.23810 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011136 B = 0.002724 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2513.662430 B =10277.923627 C =12187.482314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.071 4.071 3 Si 0.975 3.025 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.275 1.275 7 C -0.249 4.249 8 H 0.067 0.933 9 N -0.738 5.738 10 C 0.153 3.847 11 C 0.138 3.862 12 H 0.048 0.952 13 C -0.119 4.119 14 C -0.121 4.121 15 C 0.094 3.906 16 N -0.611 5.611 17 C 0.517 3.483 18 O -0.584 6.584 19 C -0.083 4.083 20 C -0.091 4.091 21 C -0.070 4.070 22 C -0.118 4.118 23 C 0.046 3.954 24 C 0.575 3.425 25 N -0.817 5.817 26 O -0.576 6.576 27 N -0.466 5.466 28 C 0.102 3.898 29 H 0.253 0.747 30 H 0.375 0.625 31 H 0.002 0.998 32 H 0.021 0.979 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.109 0.891 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.120 0.880 39 H 0.145 0.855 40 H 0.146 0.854 41 H 0.166 0.834 42 H 0.149 0.851 43 H 0.420 0.580 44 H 0.415 0.585 45 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.157 -26.394 -2.733 27.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.264 4.264 3 Si 0.803 3.197 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.200 1.200 7 C -0.380 4.380 8 H 0.085 0.915 9 N -0.381 5.381 10 C 0.025 3.975 11 C 0.033 3.967 12 H 0.066 0.934 13 C -0.158 4.158 14 C -0.159 4.159 15 C -0.027 4.027 16 N -0.345 5.345 17 C 0.308 3.692 18 O -0.463 6.463 19 C -0.122 4.122 20 C -0.093 4.093 21 C -0.096 4.096 22 C -0.139 4.139 23 C -0.092 4.092 24 C 0.359 3.641 25 N -0.380 5.380 26 O -0.456 6.456 27 N -0.177 5.177 28 C -0.058 4.058 29 H 0.062 0.938 30 H 0.207 0.793 31 H 0.020 0.980 32 H 0.039 0.961 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.128 0.872 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.138 0.862 39 H 0.163 0.837 40 H 0.164 0.836 41 H 0.183 0.817 42 H 0.167 0.833 43 H 0.252 0.748 44 H 0.247 0.753 45 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 8.876 -26.036 -1.539 27.550 hybrid contribution -0.512 1.611 0.403 1.738 sum 8.364 -24.425 -1.137 25.842 Atomic orbital electron populations 1.69808 1.06493 1.26249 1.59154 1.25564 0.96495 1.01015 1.03306 0.85123 0.77506 0.79268 0.77759 1.20615 1.21853 1.20035 1.19540 0.91204 0.85428 1.41872 0.91464 1.42350 1.05501 1.00811 1.89452 1.20970 0.94135 0.85397 0.96961 1.21490 0.92958 0.83465 0.98754 0.93399 1.22564 1.00663 0.99053 0.93485 1.22823 0.97791 0.92372 1.02903 1.22737 0.98638 0.97569 0.83732 1.48661 1.51561 1.18193 1.16089 1.21001 0.77584 0.89992 0.80667 1.90791 1.59993 1.57948 1.37607 1.20732 1.02776 0.92695 0.96006 1.20821 0.95168 0.96718 0.96636 1.21817 1.01407 0.95250 0.91080 1.22229 0.93870 0.98008 0.99834 1.21101 0.93177 1.01504 0.93395 1.18034 0.83072 0.76748 0.86247 1.43510 1.09672 1.65748 1.19057 1.90796 1.70260 1.47550 1.36986 1.67473 1.39807 1.10995 0.99396 1.23067 0.92196 0.95181 0.95371 0.93784 0.79291 0.97961 0.96114 0.91342 0.91077 0.87244 0.89684 0.89710 0.86183 0.83691 0.83582 0.81689 0.83291 0.74793 0.75274 0.80090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.35 13.06 21.65 0.28 -60.06 16 2 C -0.07 -4.24 5.50 84.86 0.47 -3.77 16 3 Si 0.98 47.60 29.55 68.60 2.03 49.63 16 4 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 5 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 6 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 7 C -0.25 -14.72 9.99 84.03 0.84 -13.88 16 8 H 0.07 3.91 7.83 -2.91 -0.02 3.89 16 9 N -0.74 -39.92 5.41 -343.46 -1.86 -41.78 16 10 C 0.15 6.80 5.66 86.38 0.49 7.29 16 11 C 0.14 4.60 2.95 45.34 0.13 4.73 16 12 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 13 C -0.12 -3.18 6.23 31.78 0.20 -2.98 16 14 C -0.12 -1.74 7.08 31.99 0.23 -1.52 16 15 C 0.09 1.17 6.74 86.86 0.59 1.75 16 16 N -0.61 -14.58 3.07 -788.09 -2.42 -17.00 16 17 C 0.52 13.08 7.66 87.66 0.67 13.75 16 18 O -0.58 -22.29 14.82 -3.01 -0.04 -22.34 16 19 C -0.08 -1.01 4.78 29.10 0.14 -0.87 16 20 C -0.09 -1.61 4.40 -19.69 -0.09 -1.70 16 21 C -0.07 -1.28 9.85 22.45 0.22 -1.06 16 22 C -0.12 -2.60 9.63 22.61 0.22 -2.39 16 23 C 0.05 1.09 6.75 41.91 0.28 1.37 16 24 C 0.58 13.92 8.08 86.88 0.70 14.62 16 25 N -0.82 -13.20 8.86 -175.38 -1.55 -14.75 16 26 O -0.58 -17.48 17.16 -3.75 -0.06 -17.55 16 27 N -0.47 -10.37 9.54 -184.91 -1.76 -12.13 16 28 C 0.10 1.98 10.86 84.81 0.92 2.90 16 29 H 0.25 15.21 8.31 -92.70 -0.77 14.44 16 30 H 0.37 21.09 7.61 -92.71 -0.71 20.39 16 31 H 0.00 0.13 6.55 -2.39 -0.02 0.11 16 32 H 0.02 0.91 8.02 -2.38 -0.02 0.89 16 33 H 0.07 2.02 7.77 -2.38 -0.02 2.00 16 34 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 38 H 0.12 0.49 7.47 -2.39 -0.02 0.47 16 39 H 0.15 0.78 8.09 -2.39 -0.02 0.76 16 40 H 0.15 0.71 7.90 -2.39 -0.02 0.69 16 41 H 0.17 2.10 8.06 -2.91 -0.02 2.07 16 42 H 0.15 3.12 7.64 -2.91 -0.02 3.09 16 43 H 0.42 5.59 8.16 -92.71 -0.76 4.83 16 44 H 0.41 4.97 8.93 -92.71 -0.83 4.14 16 45 H 0.18 2.61 8.06 -2.91 -0.02 2.59 16 Total: -1.00 -88.10 380.06 -0.62 -88.73 By element: Atomic # 1 Polarization: 30.24 SS G_CDS: -1.24 Total: 29.00 kcal Atomic # 6 Polarization: 12.25 SS G_CDS: 6.01 Total: 18.25 kcal Atomic # 7 Polarization: -138.41 SS G_CDS: -7.31 Total: -145.72 kcal Atomic # 8 Polarization: -39.78 SS G_CDS: -0.11 Total: -39.89 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 2.03 Total: 49.63 kcal Total: -88.10 -0.62 -88.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324182438.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.705 kcal (2) G-P(sol) polarization free energy of solvation -88.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds