Wall clock time and date at job start Sat Apr 11 2020 03:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86809 * 119.99603 * 2 1 4 4 H 1.48495 * 109.47151 * 269.99854 * 3 2 1 5 5 H 1.48499 * 109.46943 * 29.99972 * 3 2 1 6 6 H 1.48500 * 109.46955 * 149.99566 * 3 2 1 7 7 C 1.38815 * 120.00585 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99880 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99439 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99428 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46875 * 184.93445 * 10 9 7 12 12 H 1.09001 * 109.87331 * 54.32043 * 11 10 9 13 13 C 1.54320 * 109.88505 * 293.14136 * 11 10 9 14 14 C 1.55149 * 102.94511 * 218.39047 * 13 11 10 15 15 C 1.54911 * 101.58207 * 35.50273 * 14 13 11 16 16 N 1.47024 * 109.88038 * 175.33251 * 11 10 9 17 17 C 1.34778 * 125.65217 * 298.32497 * 16 11 10 18 18 O 1.21282 * 119.99431 * 354.95770 * 17 16 11 19 19 C 1.50699 * 120.00064 * 174.95932 * 17 16 11 20 20 C 1.50699 * 109.46899 * 179.97438 * 19 17 16 21 21 C 1.38619 * 120.32816 * 269.72679 * 20 19 17 22 22 C 1.38597 * 118.48950 * 179.73881 * 21 20 19 23 23 C 1.39304 * 119.05374 * 0.53288 * 22 21 20 24 24 C 1.48176 * 119.72087 * 179.74941 * 23 22 21 25 25 N 1.34777 * 120.00008 * 179.97438 * 24 23 22 26 26 O 1.21519 * 119.99855 * 359.97438 * 24 23 22 27 27 N 1.32715 * 120.55977 * 359.72571 * 23 22 21 28 28 C 1.31523 * 121.63984 * 0.02562 * 27 23 22 29 29 H 0.96993 * 120.00309 * 359.97438 * 1 2 3 30 30 H 0.96999 * 120.00540 * 359.97438 * 9 7 2 31 31 H 1.08995 * 109.47046 * 64.93842 * 10 9 7 32 32 H 1.09000 * 109.47395 * 304.93609 * 10 9 7 33 33 H 1.09000 * 110.71671 * 100.02566 * 13 11 10 34 34 H 1.09003 * 110.72010 * 336.76062 * 13 11 10 35 35 H 1.09001 * 111.00366 * 277.42589 * 14 13 11 36 36 H 1.08992 * 111.00597 * 153.57508 * 14 13 11 37 37 H 1.09000 * 110.36701 * 81.83062 * 15 14 13 38 38 H 1.09006 * 110.36656 * 204.15543 * 15 14 13 39 39 H 1.08998 * 109.47153 * 300.00100 * 19 17 16 40 40 H 1.09006 * 109.47064 * 60.00452 * 19 17 16 41 41 H 1.08001 * 120.76000 * 359.97438 * 21 20 19 42 42 H 1.07996 * 120.47162 * 180.28901 * 22 21 20 43 43 H 0.96998 * 119.99824 * 0.02562 * 25 24 23 44 44 H 0.96999 * 119.99706 * 180.02562 * 25 24 23 45 45 H 1.08002 * 119.54948 * 180.02562 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4404 0.7001 7 6 2.0104 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 2.0584 -3.6567 0.0005 11 6 1.0688 -4.8170 -0.1235 12 1 0.4374 -4.6733 -1.0003 13 6 0.1970 -4.9015 1.1470 14 6 0.0557 -6.4303 1.3705 15 6 1.4441 -6.9415 0.9113 16 7 1.7998 -6.0876 -0.2367 17 6 2.6532 -6.4175 -1.2263 18 8 2.8022 -5.6727 -2.1718 19 6 3.4223 -7.7117 -1.1579 20 6 4.2983 -7.8404 -2.3773 21 6 3.8204 -8.4627 -3.5200 22 6 4.6567 -8.5552 -4.6214 23 6 5.9452 -8.0325 -4.5382 24 6 6.8537 -8.1283 -5.7049 25 7 8.1013 -7.6240 -5.6308 26 8 6.4737 -8.6616 -6.7286 27 7 6.3660 -7.4489 -3.4229 28 6 5.5917 -7.3433 -2.3651 29 1 -0.4850 0.8400 0.0004 30 1 0.3557 -2.3881 0.0005 31 1 2.6170 -3.7536 0.9314 32 1 2.7497 -3.6771 -0.8419 33 1 -0.7779 -4.4449 0.9768 34 1 0.7011 -4.4331 1.9924 35 1 -0.7383 -6.8443 0.7488 36 1 -0.1157 -6.6572 2.4226 37 1 2.1749 -6.8250 1.7116 38 1 1.3811 -7.9850 0.6028 39 1 4.0428 -7.7187 -0.2618 40 1 2.7239 -8.5479 -1.1229 41 1 2.8178 -8.8629 -3.5528 42 1 4.3156 -9.0294 -5.5298 43 1 8.4047 -7.1987 -4.8135 44 1 8.6958 -7.6865 -6.3947 45 1 5.9686 -6.8614 -1.4751 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324182444.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:06:10 Heat of formation + Delta-G solvation = -23.328766 kcal Electronic energy + Delta-G solvation = -27738.279117 eV Core-core repulsion = 23755.843913 eV Total energy + Delta-G solvation = -3982.435205 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.98813 -40.06972 -38.99112 -37.45146 -34.57031 -34.30234 -33.44877 -32.27926 -31.68897 -31.34448 -29.06530 -28.20642 -25.14743 -24.44597 -23.83476 -22.89339 -22.07880 -21.23806 -20.56609 -18.93882 -18.47969 -17.52042 -17.36298 -16.80221 -16.58367 -16.22306 -15.74532 -15.28576 -15.22238 -14.79470 -14.53457 -14.39748 -14.00785 -13.77865 -13.58840 -13.43549 -13.34569 -13.15025 -12.87403 -12.73318 -12.42077 -12.25315 -12.04078 -11.56372 -11.22141 -10.91930 -10.83959 -10.68679 -10.59905 -10.42674 -10.18163 -10.04625 -9.98014 -9.87752 -9.82812 -9.67652 -9.24065 -8.84491 -8.51415 -6.90235 -5.74565 -3.02908 0.35261 0.98387 2.43717 2.65497 2.99323 3.12952 3.46081 3.51223 3.52434 3.63313 3.94004 4.29507 4.43977 4.47455 4.54031 4.61991 4.63909 4.68103 4.88933 4.90211 5.00535 5.10702 5.24656 5.33308 5.37713 5.46635 5.52304 5.59931 5.69784 5.75695 5.85410 5.89073 6.00331 6.03357 6.13796 6.27839 6.38085 6.46283 6.49792 6.79740 6.93526 6.99338 7.48490 7.59232 7.73204 7.95439 8.22314 8.44434 9.55482 10.11513 10.46989 11.48508 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.010721 B = 0.002799 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2611.036644 B = 9999.997089 C =12069.621561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.235 4.235 8 H 0.069 0.931 9 N -0.728 5.728 10 C 0.148 3.852 11 C 0.130 3.870 12 H 0.077 0.923 13 C -0.122 4.122 14 C -0.134 4.134 15 C 0.099 3.901 16 N -0.612 5.612 17 C 0.525 3.475 18 O -0.520 6.520 19 C -0.098 4.098 20 C -0.087 4.087 21 C -0.068 4.068 22 C -0.106 4.106 23 C 0.066 3.934 24 C 0.581 3.419 25 N -0.836 5.836 26 O -0.540 6.540 27 N -0.456 5.456 28 C 0.115 3.885 29 H 0.255 0.745 30 H 0.383 0.617 31 H 0.015 0.985 32 H 0.034 0.966 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.109 0.891 40 H 0.106 0.894 41 H 0.142 0.858 42 H 0.148 0.852 43 H 0.413 0.587 44 H 0.404 0.596 45 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.168 -23.686 0.333 25.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.366 4.366 8 H 0.087 0.913 9 N -0.373 5.373 10 C 0.019 3.981 11 C 0.027 3.973 12 H 0.095 0.905 13 C -0.160 4.160 14 C -0.172 4.172 15 C -0.025 4.025 16 N -0.348 5.348 17 C 0.313 3.687 18 O -0.396 6.396 19 C -0.138 4.138 20 C -0.089 4.089 21 C -0.094 4.094 22 C -0.127 4.127 23 C -0.072 4.072 24 C 0.364 3.636 25 N -0.399 5.399 26 O -0.416 6.416 27 N -0.167 5.167 28 C -0.045 4.045 29 H 0.065 0.935 30 H 0.217 0.783 31 H 0.032 0.968 32 H 0.052 0.948 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.128 0.872 40 H 0.124 0.876 41 H 0.160 0.840 42 H 0.166 0.834 43 H 0.243 0.757 44 H 0.235 0.765 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 8.916 -23.223 -0.839 24.890 hybrid contribution -0.379 0.914 0.189 1.007 sum 8.537 -22.309 -0.649 23.896 Atomic orbital electron populations 1.69652 1.05079 1.25622 1.58028 1.24723 0.95544 0.97634 1.03091 0.86178 0.78620 0.83772 0.77575 1.21697 1.21768 1.20769 1.19209 0.91014 0.84009 1.42387 0.91275 1.42198 1.05745 0.99710 1.89599 1.20922 0.93632 0.85242 0.98259 1.21840 0.93545 0.83343 0.98544 0.90518 1.22679 1.00721 0.95020 0.97557 1.22795 0.95981 0.96657 1.01812 1.22352 0.97027 0.94342 0.88729 1.48548 1.44499 1.17779 1.23940 1.19960 0.79480 0.87572 0.81726 1.90809 1.64407 1.52359 1.31976 1.20661 0.98540 0.97352 0.97287 1.20564 0.95501 0.97168 0.95712 1.21474 0.99805 0.96485 0.91646 1.22062 0.93027 0.97880 0.99711 1.20992 0.93746 0.99384 0.93065 1.17883 0.81928 0.77597 0.86172 1.43635 1.14563 1.61387 1.20286 1.90826 1.75708 1.44377 1.30680 1.67492 1.37178 1.12810 0.99258 1.22613 0.90004 0.95499 0.96362 0.93543 0.78318 0.96766 0.94765 0.89745 0.89860 0.90794 0.89923 0.91162 0.90874 0.87246 0.87601 0.84047 0.83386 0.75702 0.76490 0.81988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.54 13.06 55.49 0.72 -27.81 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.91 29.55 -169.99 -5.02 17.88 16 4 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.23 -6.78 9.99 -15.06 -0.15 -6.93 16 8 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 9 N -0.73 -18.87 5.45 -59.91 -0.33 -19.20 16 10 C 0.15 3.14 5.65 -4.04 -0.02 3.12 16 11 C 0.13 2.16 2.93 -66.95 -0.20 1.96 16 12 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 13 C -0.12 -1.65 6.08 -24.90 -0.15 -1.80 16 14 C -0.13 -1.22 7.08 -24.59 -0.17 -1.40 16 15 C 0.10 0.85 6.65 -2.53 -0.02 0.83 16 16 N -0.61 -7.99 3.06 -163.01 -0.50 -8.49 16 17 C 0.53 7.17 7.57 -10.99 -0.08 7.09 16 18 O -0.52 -9.83 15.21 5.56 0.08 -9.74 16 19 C -0.10 -0.82 4.94 -29.04 -0.14 -0.96 16 20 C -0.09 -0.88 4.40 -104.36 -0.46 -1.34 16 21 C -0.07 -0.67 9.85 -39.31 -0.39 -1.06 16 22 C -0.11 -1.17 9.63 -39.05 -0.38 -1.54 16 23 C 0.07 0.79 6.75 -83.01 -0.56 0.23 16 24 C 0.58 6.92 8.08 -12.18 -0.10 6.82 16 25 N -0.84 -6.91 8.86 30.61 0.27 -6.64 16 26 O -0.54 -7.92 17.16 5.35 0.09 -7.83 16 27 N -0.46 -5.28 9.54 -9.80 -0.09 -5.37 16 28 C 0.12 1.23 10.86 -17.56 -0.19 1.04 16 29 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 30 H 0.38 10.22 7.44 -40.82 -0.30 9.91 16 31 H 0.01 0.31 8.03 -51.93 -0.42 -0.11 16 32 H 0.03 0.82 6.90 -51.93 -0.36 0.46 16 33 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.08 1.22 7.77 -51.93 -0.40 0.81 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.42 7.51 -51.93 -0.39 0.03 16 39 H 0.11 0.65 8.09 -51.93 -0.42 0.23 16 40 H 0.11 0.59 7.71 -51.93 -0.40 0.19 16 41 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 42 H 0.15 1.49 7.64 -52.49 -0.40 1.09 16 43 H 0.41 2.90 8.16 -40.82 -0.33 2.57 16 44 H 0.40 2.53 8.93 -40.82 -0.36 2.16 16 45 H 0.16 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 380.35 15.07 5.73 5.73 Total: -1.00 -37.89 380.35 -8.44 -46.33 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -6.30 Total: 9.59 kcal Atomic # 6 Polarization: 8.66 SS G_CDS: -3.11 Total: 5.55 kcal Atomic # 7 Polarization: -67.59 SS G_CDS: 0.08 Total: -67.51 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: 0.18 Total: -17.58 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.88 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -37.89 -8.44 -46.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324182444.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.999 kcal (2) G-P(sol) polarization free energy of solvation -37.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds