Wall clock time and date at job start Sat Apr 11 2020 03:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86809 * 119.99603 * 2 1 4 4 H 1.48495 * 109.47151 * 269.99854 * 3 2 1 5 5 H 1.48499 * 109.46943 * 29.99972 * 3 2 1 6 6 H 1.48500 * 109.46955 * 149.99566 * 3 2 1 7 7 C 1.38815 * 120.00585 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99880 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99439 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99428 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46875 * 184.93445 * 10 9 7 12 12 H 1.09001 * 109.87331 * 54.32043 * 11 10 9 13 13 C 1.54320 * 109.88505 * 293.14136 * 11 10 9 14 14 C 1.55149 * 102.94511 * 218.39047 * 13 11 10 15 15 C 1.54911 * 101.58207 * 35.50273 * 14 13 11 16 16 N 1.47024 * 109.88038 * 175.33251 * 11 10 9 17 17 C 1.34778 * 125.65217 * 298.32497 * 16 11 10 18 18 O 1.21282 * 119.99431 * 354.95770 * 17 16 11 19 19 C 1.50699 * 120.00064 * 174.95932 * 17 16 11 20 20 C 1.50699 * 109.46899 * 179.97438 * 19 17 16 21 21 C 1.38619 * 120.32816 * 269.72679 * 20 19 17 22 22 C 1.38597 * 118.48950 * 179.73881 * 21 20 19 23 23 C 1.39304 * 119.05374 * 0.53288 * 22 21 20 24 24 C 1.48176 * 119.72087 * 179.74941 * 23 22 21 25 25 N 1.34777 * 120.00008 * 179.97438 * 24 23 22 26 26 O 1.21519 * 119.99855 * 359.97438 * 24 23 22 27 27 N 1.32715 * 120.55977 * 359.72571 * 23 22 21 28 28 C 1.31523 * 121.63984 * 0.02562 * 27 23 22 29 29 H 0.96993 * 120.00309 * 359.97438 * 1 2 3 30 30 H 0.96999 * 120.00540 * 359.97438 * 9 7 2 31 31 H 1.08995 * 109.47046 * 64.93842 * 10 9 7 32 32 H 1.09000 * 109.47395 * 304.93609 * 10 9 7 33 33 H 1.09000 * 110.71671 * 100.02566 * 13 11 10 34 34 H 1.09003 * 110.72010 * 336.76062 * 13 11 10 35 35 H 1.09001 * 111.00366 * 277.42589 * 14 13 11 36 36 H 1.08992 * 111.00597 * 153.57508 * 14 13 11 37 37 H 1.09000 * 110.36701 * 81.83062 * 15 14 13 38 38 H 1.09006 * 110.36656 * 204.15543 * 15 14 13 39 39 H 1.08998 * 109.47153 * 300.00100 * 19 17 16 40 40 H 1.09006 * 109.47064 * 60.00452 * 19 17 16 41 41 H 1.08001 * 120.76000 * 359.97438 * 21 20 19 42 42 H 1.07996 * 120.47162 * 180.28901 * 22 21 20 43 43 H 0.96998 * 119.99824 * 0.02562 * 25 24 23 44 44 H 0.96999 * 119.99706 * 180.02562 * 25 24 23 45 45 H 1.08002 * 119.54948 * 180.02562 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4404 0.7001 7 6 2.0104 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 2.0584 -3.6567 0.0005 11 6 1.0688 -4.8170 -0.1235 12 1 0.4374 -4.6733 -1.0003 13 6 0.1970 -4.9015 1.1470 14 6 0.0557 -6.4303 1.3705 15 6 1.4441 -6.9415 0.9113 16 7 1.7998 -6.0876 -0.2367 17 6 2.6532 -6.4175 -1.2263 18 8 2.8022 -5.6727 -2.1718 19 6 3.4223 -7.7117 -1.1579 20 6 4.2983 -7.8404 -2.3773 21 6 3.8204 -8.4627 -3.5200 22 6 4.6567 -8.5552 -4.6214 23 6 5.9452 -8.0325 -4.5382 24 6 6.8537 -8.1283 -5.7049 25 7 8.1013 -7.6240 -5.6308 26 8 6.4737 -8.6616 -6.7286 27 7 6.3660 -7.4489 -3.4229 28 6 5.5917 -7.3433 -2.3651 29 1 -0.4850 0.8400 0.0004 30 1 0.3557 -2.3881 0.0005 31 1 2.6170 -3.7536 0.9314 32 1 2.7497 -3.6771 -0.8419 33 1 -0.7779 -4.4449 0.9768 34 1 0.7011 -4.4331 1.9924 35 1 -0.7383 -6.8443 0.7488 36 1 -0.1157 -6.6572 2.4226 37 1 2.1749 -6.8250 1.7116 38 1 1.3811 -7.9850 0.6028 39 1 4.0428 -7.7187 -0.2618 40 1 2.7239 -8.5479 -1.1229 41 1 2.8178 -8.8629 -3.5528 42 1 4.3156 -9.0294 -5.5298 43 1 8.4047 -7.1987 -4.8135 44 1 8.6958 -7.6865 -6.3947 45 1 5.9686 -6.8614 -1.4751 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324182444.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:06:09 Heat of formation + Delta-G solvation = -53.501552 kcal Electronic energy + Delta-G solvation = -27739.587508 eV Core-core repulsion = 23755.843913 eV Total energy + Delta-G solvation = -3983.743595 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.83512 -41.10163 -39.89965 -38.58350 -36.42418 -35.18631 -34.31153 -33.47582 -33.03209 -32.50775 -30.46374 -29.15003 -26.72084 -25.46663 -24.77251 -24.31338 -23.30272 -22.10935 -21.62171 -20.15053 -19.30012 -19.09574 -18.34970 -18.08205 -17.55560 -17.11239 -16.70348 -16.43772 -16.19166 -16.04111 -15.82617 -15.59773 -15.17959 -15.05801 -14.94932 -14.69733 -14.40591 -14.16693 -13.99686 -13.71102 -13.57341 -13.35640 -12.97219 -12.92025 -12.81053 -12.68059 -12.20238 -12.01055 -11.90826 -11.74627 -11.62447 -11.55169 -11.11377 -10.97672 -10.81495 -10.79115 -10.67082 -10.07067 -9.62761 -9.06500 -7.99979 -5.29597 -0.47946 0.20365 1.43265 1.46340 1.53975 1.55401 1.65603 2.02636 2.33301 2.53383 2.79702 3.17532 3.32904 3.52101 3.60078 3.70308 3.78451 3.90109 3.93537 3.95499 4.02464 4.13525 4.19397 4.35085 4.38691 4.49500 4.56470 4.65050 4.71716 4.81130 4.86658 4.94746 4.98715 5.05972 5.11940 5.18150 5.19392 5.37441 5.42988 5.48310 5.52823 5.74284 6.20801 6.22005 6.61954 6.68718 7.16141 7.21069 7.28517 8.00768 8.27098 9.23326 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.010721 B = 0.002799 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2611.036644 B = 9999.997089 C =12069.621561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.071 4.071 3 Si 0.974 3.026 4 H -0.290 1.290 5 H -0.288 1.288 6 H -0.269 1.269 7 C -0.250 4.250 8 H 0.068 0.932 9 N -0.738 5.738 10 C 0.155 3.845 11 C 0.137 3.863 12 H 0.044 0.956 13 C -0.121 4.121 14 C -0.121 4.121 15 C 0.094 3.906 16 N -0.611 5.611 17 C 0.518 3.482 18 O -0.586 6.586 19 C -0.083 4.083 20 C -0.091 4.091 21 C -0.069 4.069 22 C -0.118 4.118 23 C 0.045 3.955 24 C 0.575 3.425 25 N -0.817 5.817 26 O -0.576 6.576 27 N -0.466 5.466 28 C 0.101 3.899 29 H 0.254 0.746 30 H 0.376 0.624 31 H 0.020 0.980 32 H 0.003 0.997 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.111 0.889 37 H 0.088 0.912 38 H 0.118 0.882 39 H 0.144 0.856 40 H 0.148 0.852 41 H 0.168 0.832 42 H 0.150 0.850 43 H 0.420 0.580 44 H 0.415 0.585 45 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.550 -25.726 2.419 27.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.263 4.263 3 Si 0.803 3.197 4 H -0.217 1.217 5 H -0.214 1.214 6 H -0.194 1.194 7 C -0.382 4.382 8 H 0.085 0.915 9 N -0.381 5.381 10 C 0.027 3.973 11 C 0.033 3.967 12 H 0.063 0.937 13 C -0.159 4.159 14 C -0.159 4.159 15 C -0.027 4.027 16 N -0.345 5.345 17 C 0.308 3.692 18 O -0.465 6.465 19 C -0.122 4.122 20 C -0.094 4.094 21 C -0.095 4.095 22 C -0.139 4.139 23 C -0.092 4.092 24 C 0.359 3.641 25 N -0.380 5.380 26 O -0.456 6.456 27 N -0.177 5.177 28 C -0.059 4.059 29 H 0.062 0.938 30 H 0.208 0.792 31 H 0.038 0.962 32 H 0.021 0.979 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.129 0.871 37 H 0.106 0.894 38 H 0.136 0.864 39 H 0.161 0.839 40 H 0.165 0.835 41 H 0.185 0.815 42 H 0.168 0.832 43 H 0.252 0.748 44 H 0.247 0.753 45 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 9.347 -25.309 1.297 27.011 hybrid contribution -0.476 1.561 -0.446 1.692 sum 8.871 -23.748 0.851 25.365 Atomic orbital electron populations 1.69798 1.06478 1.26285 1.59087 1.25564 0.96501 1.01010 1.03254 0.85134 0.77849 0.79344 0.77397 1.21717 1.21395 1.19356 1.19549 0.91224 0.85435 1.41943 0.91450 1.42348 1.05571 1.00767 1.89442 1.20928 0.94072 0.85452 0.96806 1.21491 0.92587 0.83796 0.98871 0.93735 1.22585 0.99052 0.98983 0.95256 1.22821 0.96869 0.92294 1.03903 1.22746 0.96797 0.95628 0.87511 1.48666 1.43838 1.16776 1.25212 1.20985 0.78973 0.88672 0.80551 1.90789 1.66367 1.54791 1.34575 1.20732 0.98745 0.95125 0.97639 1.20815 0.95468 0.96508 0.96564 1.21824 1.00618 0.95966 0.91049 1.22237 0.93098 0.98087 1.00465 1.21109 0.94375 1.00381 0.93348 1.18036 0.82749 0.77463 0.85839 1.43516 1.13586 1.59924 1.20984 1.90796 1.76568 1.46318 1.31876 1.67470 1.37716 1.13091 0.99444 1.23052 0.90664 0.95507 0.96688 0.93754 0.79156 0.96187 0.97934 0.91040 0.91009 0.89943 0.87072 0.89357 0.86426 0.83859 0.83463 0.81494 0.83191 0.74811 0.75270 0.80316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.15 13.06 21.65 0.28 -59.86 16 2 C -0.07 -4.20 5.50 84.86 0.47 -3.73 16 3 Si 0.97 47.53 29.55 68.60 2.03 49.56 16 4 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 5 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 6 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 7 C -0.25 -14.75 9.99 84.03 0.84 -13.91 16 8 H 0.07 3.91 7.83 -2.91 -0.02 3.89 16 9 N -0.74 -39.67 5.45 -343.45 -1.87 -41.55 16 10 C 0.16 6.81 5.65 86.38 0.49 7.30 16 11 C 0.14 4.59 2.93 45.34 0.13 4.72 16 12 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 13 C -0.12 -3.18 6.08 31.78 0.19 -2.98 16 14 C -0.12 -1.75 7.08 31.98 0.23 -1.52 16 15 C 0.09 1.16 6.65 86.86 0.58 1.74 16 16 N -0.61 -14.65 3.06 -788.03 -2.42 -17.07 16 17 C 0.52 13.21 7.57 87.66 0.66 13.88 16 18 O -0.59 -22.46 15.21 -3.03 -0.05 -22.51 16 19 C -0.08 -1.04 4.94 29.10 0.14 -0.90 16 20 C -0.09 -1.64 4.40 -19.70 -0.09 -1.72 16 21 C -0.07 -1.25 9.85 22.45 0.22 -1.02 16 22 C -0.12 -2.58 9.63 22.61 0.22 -2.36 16 23 C 0.05 1.09 6.75 41.91 0.28 1.37 16 24 C 0.58 13.99 8.08 86.88 0.70 14.69 16 25 N -0.82 -13.42 8.86 -175.37 -1.55 -14.97 16 26 O -0.58 -17.46 17.16 -3.77 -0.06 -17.52 16 27 N -0.47 -10.60 9.54 -184.91 -1.76 -12.37 16 28 C 0.10 2.03 10.86 84.82 0.92 2.95 16 29 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 30 H 0.38 20.95 7.44 -92.71 -0.69 20.26 16 31 H 0.02 0.86 8.03 -2.39 -0.02 0.84 16 32 H 0.00 0.13 6.90 -2.39 -0.02 0.11 16 33 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.07 2.05 7.77 -2.39 -0.02 2.03 16 35 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.12 0.52 7.51 -2.38 -0.02 0.50 16 39 H 0.14 0.91 8.09 -2.39 -0.02 0.89 16 40 H 0.15 0.70 7.71 -2.38 -0.02 0.68 16 41 H 0.17 2.02 8.06 -2.91 -0.02 2.00 16 42 H 0.15 3.09 7.64 -2.91 -0.02 3.07 16 43 H 0.42 5.76 8.16 -92.71 -0.76 5.00 16 44 H 0.41 5.06 8.93 -92.71 -0.83 4.23 16 45 H 0.18 2.78 8.06 -2.91 -0.02 2.76 16 Total: -1.00 -87.91 380.35 -0.64 -88.55 By element: Atomic # 1 Polarization: 30.46 SS G_CDS: -1.22 Total: 29.23 kcal Atomic # 6 Polarization: 12.51 SS G_CDS: 5.99 Total: 18.50 kcal Atomic # 7 Polarization: -138.49 SS G_CDS: -7.32 Total: -145.81 kcal Atomic # 8 Polarization: -39.92 SS G_CDS: -0.11 Total: -40.03 kcal Atomic # 14 Polarization: 47.53 SS G_CDS: 2.03 Total: 49.56 kcal Total: -87.91 -0.64 -88.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324182444.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.049 kcal (2) G-P(sol) polarization free energy of solvation -87.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds