Wall clock time and date at job start Sat Apr 11 2020 03:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99940 * 2 1 4 4 H 1.48501 * 109.47275 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.47021 * 120.00306 * 3 2 1 6 6 H 1.48497 * 109.46915 * 239.99817 * 3 2 1 7 7 C 1.38818 * 119.99918 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99597 * 179.97438 * 7 2 1 9 9 N 1.36930 * 119.99987 * 359.97438 * 7 2 1 10 10 C 1.46496 * 119.99906 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47117 * 165.74280 * 10 9 7 12 12 H 1.08991 * 109.87701 * 39.95608 * 11 10 9 13 13 C 1.54329 * 109.88216 * 160.97532 * 11 10 9 14 14 C 1.55156 * 102.94278 * 141.60866 * 13 11 10 15 15 C 1.54913 * 101.58339 * 324.49701 * 14 13 11 16 16 N 1.47026 * 109.88053 * 278.77941 * 11 10 9 17 17 C 1.34773 * 125.64638 * 61.59946 * 16 11 10 18 18 O 1.21545 * 120.00279 * 6.45725 * 17 16 11 19 19 C 1.47862 * 119.99850 * 186.45284 * 17 16 11 20 20 C 1.39617 * 120.11126 * 12.20554 * 19 17 16 21 21 C 1.37981 * 119.99609 * 179.74294 * 20 19 17 22 22 C 1.38262 * 120.21924 * 0.55336 * 21 20 19 23 23 C 1.38944 * 120.22303 * 359.70323 * 22 21 20 24 24 N 1.39979 * 119.99732 * 180.02562 * 23 22 21 25 25 C 1.34773 * 119.99711 * 214.03510 * 24 23 22 26 26 N 1.34779 * 120.00239 * 185.96862 * 25 24 23 27 27 O 1.21589 * 120.00093 * 5.96962 * 25 24 23 28 28 C 1.38635 * 120.00116 * 0.02562 * 23 22 21 29 29 H 0.97005 * 120.00122 * 180.02562 * 1 2 3 30 30 H 0.97004 * 120.00228 * 359.97438 * 9 7 2 31 31 H 1.08996 * 109.47371 * 285.74062 * 10 9 7 32 32 H 1.08999 * 109.47334 * 45.74412 * 10 9 7 33 33 H 1.08998 * 110.72018 * 259.97201 * 13 11 10 34 34 H 1.09000 * 110.72040 * 23.24658 * 13 11 10 35 35 H 1.09004 * 111.00315 * 82.57029 * 14 13 11 36 36 H 1.08993 * 111.00399 * 206.38270 * 14 13 11 37 37 H 1.08997 * 110.36336 * 155.84882 * 15 14 13 38 38 H 1.09002 * 110.36655 * 278.06217 * 15 14 13 39 39 H 1.08000 * 120.00315 * 359.97438 * 20 19 17 40 40 H 1.07994 * 119.88823 * 180.25038 * 21 20 19 41 41 H 1.07997 * 119.88701 * 179.71730 * 22 21 20 42 42 H 0.96994 * 120.00081 * 34.03347 * 24 23 22 43 43 H 0.97005 * 119.99301 * 0.02562 * 26 25 24 44 44 H 0.96995 * 120.00586 * 180.02562 * 26 25 24 45 45 H 1.08001 * 120.10503 * 180.02562 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7465 0.0006 5 1 3.1040 1.6964 1.2125 6 1 3.1039 1.6964 -1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 6 1.1023 -4.7975 0.3547 12 1 0.1402 -4.6402 -0.1327 13 6 1.7042 -6.1456 -0.0946 14 6 1.3045 -7.1056 1.0570 15 6 1.4061 -6.1724 2.2893 16 7 0.9229 -4.8637 1.8125 17 6 0.4035 -3.8892 2.5850 18 8 -0.0709 -2.8947 2.0719 19 6 0.4107 -4.0298 4.0569 20 6 1.1711 -5.0329 4.6610 21 6 1.1803 -5.1586 6.0350 22 6 0.4293 -4.3009 6.8174 23 6 -0.3349 -3.3028 6.2255 24 7 -1.0930 -2.4367 7.0221 25 6 -2.2770 -1.9731 6.5752 26 7 -2.9501 -1.0472 7.2867 27 8 -2.7379 -2.3900 5.5302 28 6 -0.3465 -3.1646 4.8461 29 1 -0.4850 -0.8401 0.0004 30 1 0.3555 -2.3881 0.0002 31 1 2.4812 -3.8320 -0.9896 32 1 2.8608 -3.6128 0.7355 33 1 1.2634 -6.4697 -1.0373 34 1 2.7886 -6.0749 -0.1788 35 1 0.2857 -7.4702 0.9259 36 1 2.0070 -7.9353 1.1355 37 1 0.7724 -6.5397 3.0965 38 1 2.4407 -6.0975 2.6242 39 1 1.7550 -5.7081 4.0531 40 1 1.7722 -5.9326 6.5007 41 1 0.4369 -4.4070 7.8921 42 1 -0.7663 -2.1703 7.8956 43 1 -2.5822 -0.7143 8.1202 44 1 -3.8024 -0.7138 6.9653 45 1 -0.9396 -2.3891 4.3843 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324275837.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:06:12 Heat of formation + Delta-G solvation = 13.135396 kcal Electronic energy + Delta-G solvation = -29204.673534 eV Core-core repulsion = 25223.819534 eV Total energy + Delta-G solvation = -3980.854000 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.77019 -39.96558 -38.32830 -36.86584 -34.92881 -34.38489 -33.79646 -31.85409 -31.17367 -30.67771 -29.37443 -28.30972 -25.06951 -24.04465 -23.31602 -22.54805 -21.58946 -21.11188 -20.87121 -19.17951 -18.47258 -18.05364 -16.98399 -16.51672 -16.35384 -16.29063 -15.63415 -15.32627 -14.81984 -14.63278 -14.31467 -13.96398 -13.80893 -13.59261 -13.43449 -13.29402 -13.23550 -12.83034 -12.78940 -12.43352 -12.00972 -11.86708 -11.51816 -11.45519 -10.85190 -10.77888 -10.55651 -10.50564 -10.45103 -10.27292 -10.24849 -9.86750 -9.79331 -9.19736 -8.87135 -8.84291 -8.62194 -8.18033 -8.10477 -6.60422 -5.76106 -2.71508 1.00257 1.39108 2.58195 2.95390 3.33369 3.35730 3.64398 3.70462 3.87494 4.09961 4.20556 4.55740 4.59389 4.85814 4.86479 4.93704 4.97908 5.09103 5.25064 5.35598 5.41842 5.47250 5.52206 5.57576 5.75296 5.84292 5.88136 5.91908 6.01286 6.09059 6.13818 6.22854 6.28814 6.34422 6.43929 6.47917 6.54728 6.60746 6.69506 6.83099 6.97493 7.06441 7.65352 7.98823 8.07496 8.39670 8.82064 9.13906 9.65139 10.50367 10.65958 11.74207 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.008080 B = 0.004995 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3464.696245 B = 5604.412370 C = 8181.136584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.044 4.044 3 Si 1.076 2.924 4 H -0.287 1.287 5 H -0.300 1.300 6 H -0.298 1.298 7 C -0.328 4.328 8 H 0.055 0.945 9 N -0.729 5.729 10 C 0.153 3.847 11 C 0.129 3.871 12 H 0.073 0.927 13 C -0.124 4.124 14 C -0.135 4.135 15 C 0.092 3.908 16 N -0.613 5.613 17 C 0.558 3.442 18 O -0.469 6.469 19 C -0.095 4.095 20 C -0.133 4.133 21 C -0.111 4.111 22 C -0.132 4.132 23 C 0.154 3.846 24 N -0.685 5.685 25 C 0.702 3.298 26 N -0.862 5.862 27 O -0.564 6.564 28 C -0.060 4.060 29 H 0.262 0.738 30 H 0.377 0.623 31 H 0.015 0.985 32 H 0.025 0.975 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.069 0.931 39 H 0.150 0.850 40 H 0.129 0.871 41 H 0.125 0.875 42 H 0.406 0.594 43 H 0.397 0.603 44 H 0.419 0.581 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.963 -15.070 17.982 23.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.242 4.242 3 Si 0.909 3.091 4 H -0.212 1.212 5 H -0.228 1.228 6 H -0.226 1.226 7 C -0.460 4.460 8 H 0.073 0.927 9 N -0.376 5.376 10 C 0.024 3.976 11 C 0.025 3.975 12 H 0.091 0.909 13 C -0.162 4.162 14 C -0.173 4.173 15 C -0.031 4.031 16 N -0.350 5.350 17 C 0.345 3.655 18 O -0.340 6.340 19 C -0.099 4.099 20 C -0.152 4.152 21 C -0.130 4.130 22 C -0.153 4.153 23 C 0.059 3.941 24 N -0.334 5.334 25 C 0.400 3.600 26 N -0.430 5.430 27 O -0.439 6.439 28 C -0.081 4.081 29 H 0.073 0.927 30 H 0.213 0.787 31 H 0.033 0.967 32 H 0.043 0.957 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.087 0.913 39 H 0.167 0.833 40 H 0.147 0.853 41 H 0.143 0.857 42 H 0.241 0.759 43 H 0.225 0.775 44 H 0.252 0.748 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 0.389 -13.124 16.840 21.353 hybrid contribution 0.082 -1.185 0.997 1.551 sum 0.471 -14.309 17.837 22.872 Atomic orbital electron populations 1.70727 1.05916 1.29098 1.52856 1.25576 0.97190 1.00433 1.01022 0.83311 0.74135 0.76209 0.75469 1.21217 1.22777 1.22580 1.19904 0.91338 0.86234 1.48499 0.92727 1.42412 1.05389 1.00030 1.89777 1.20937 0.93417 0.86102 0.97121 1.21930 0.99853 0.95553 0.80121 0.90910 1.22639 1.01582 0.93564 0.98451 1.22824 1.02339 0.97407 0.94710 1.22672 0.99084 0.83948 0.97399 1.48269 1.63569 1.15403 1.07731 1.17855 0.79286 0.82613 0.85720 1.90970 1.41790 1.27615 1.73644 1.19889 0.99279 0.97215 0.93552 1.22269 0.99205 0.98182 0.95509 1.20829 0.99495 0.99298 0.93338 1.20941 0.99816 0.94589 0.99957 1.17303 0.94809 0.91770 0.90185 1.42486 1.19938 1.49813 1.21194 1.15982 0.80354 0.79964 0.83690 1.42938 1.26794 1.45479 1.27839 1.91086 1.68443 1.61133 1.23226 1.21314 0.96689 0.98608 0.91519 0.92676 0.78735 0.96722 0.95703 0.90166 0.90354 0.90674 0.90047 0.90007 0.91288 0.83332 0.85306 0.85690 0.75863 0.77545 0.74829 0.83291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -32.52 13.70 55.49 0.76 -31.76 16 2 C -0.04 -1.41 5.50 -17.43 -0.10 -1.51 16 3 Si 1.08 28.63 29.92 -169.99 -5.09 23.54 16 4 H -0.29 -7.66 7.11 56.52 0.40 -7.26 16 5 H -0.30 -7.66 7.11 56.52 0.40 -7.26 16 6 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 7 C -0.33 -10.37 9.99 -15.06 -0.15 -10.52 16 8 H 0.05 1.69 7.83 -52.48 -0.41 1.28 16 9 N -0.73 -20.94 4.12 -59.91 -0.25 -21.19 16 10 C 0.15 3.48 5.60 -4.04 -0.02 3.45 16 11 C 0.13 2.34 3.03 -66.95 -0.20 2.14 16 12 H 0.07 1.46 7.95 -51.93 -0.41 1.05 16 13 C -0.12 -1.55 6.40 -24.89 -0.16 -1.71 16 14 C -0.13 -1.34 7.08 -24.58 -0.17 -1.52 16 15 C 0.09 1.09 4.90 -2.53 -0.01 1.08 16 16 N -0.61 -10.80 3.05 -164.11 -0.50 -11.30 16 17 C 0.56 11.96 7.50 -12.32 -0.09 11.87 16 18 O -0.47 -12.74 13.65 5.33 0.07 -12.67 16 19 C -0.10 -1.71 5.83 -104.99 -0.61 -2.33 16 20 C -0.13 -1.76 8.23 -39.16 -0.32 -2.08 16 21 C -0.11 -1.18 10.02 -39.67 -0.40 -1.58 16 22 C -0.13 -1.43 9.96 -39.31 -0.39 -1.82 16 23 C 0.15 2.16 6.26 -83.73 -0.52 1.64 16 24 N -0.69 -7.68 5.35 -14.25 -0.08 -7.76 16 25 C 0.70 9.50 8.56 -86.92 -0.74 8.75 16 26 N -0.86 -7.14 8.88 27.63 0.25 -6.89 16 27 O -0.56 -10.86 14.94 5.29 0.08 -10.79 16 28 C -0.06 -1.12 8.19 -38.98 -0.32 -1.44 16 29 H 0.26 9.20 6.78 -40.82 -0.28 8.92 16 30 H 0.38 11.52 4.88 -40.82 -0.20 11.32 16 31 H 0.02 0.34 8.01 -51.93 -0.42 -0.08 16 32 H 0.02 0.59 8.13 -51.93 -0.42 0.17 16 33 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.08 0.93 7.85 -51.93 -0.41 0.52 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.87 6.21 -51.93 -0.32 0.54 16 38 H 0.07 0.73 7.17 -51.93 -0.37 0.36 16 39 H 0.15 1.64 3.54 -52.49 -0.19 1.46 16 40 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 41 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 42 H 0.41 2.72 8.84 -40.82 -0.36 2.36 16 43 H 0.40 1.72 8.85 -40.82 -0.36 1.36 16 44 H 0.42 3.23 8.93 -40.82 -0.36 2.87 16 45 H 0.15 3.38 6.13 -52.49 -0.32 3.05 16 LS Contribution 363.62 15.07 5.48 5.48 Total: -1.00 -44.13 363.62 -9.24 -53.37 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: -5.74 Total: 15.54 kcal Atomic # 6 Polarization: 8.65 SS G_CDS: -4.22 Total: 4.43 kcal Atomic # 7 Polarization: -79.09 SS G_CDS: 0.18 Total: -78.91 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: 0.15 Total: -23.45 kcal Atomic # 14 Polarization: 28.63 SS G_CDS: -5.09 Total: 23.54 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -44.13 -9.24 -53.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324275837.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.504 kcal (2) G-P(sol) polarization free energy of solvation -44.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds