Wall clock time and date at job start Sat Apr 11 2020 03:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99940 * 2 1 4 4 H 1.48501 * 109.47275 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.47021 * 120.00306 * 3 2 1 6 6 H 1.48497 * 109.46915 * 239.99817 * 3 2 1 7 7 C 1.38818 * 119.99918 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99597 * 179.97438 * 7 2 1 9 9 N 1.36930 * 119.99987 * 359.97438 * 7 2 1 10 10 C 1.46496 * 119.99906 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47117 * 165.74280 * 10 9 7 12 12 H 1.08991 * 109.87701 * 39.95608 * 11 10 9 13 13 C 1.54329 * 109.88216 * 160.97532 * 11 10 9 14 14 C 1.55156 * 102.94278 * 141.60866 * 13 11 10 15 15 C 1.54913 * 101.58339 * 324.49701 * 14 13 11 16 16 N 1.47026 * 109.88053 * 278.77941 * 11 10 9 17 17 C 1.34773 * 125.64638 * 61.59946 * 16 11 10 18 18 O 1.21545 * 120.00279 * 6.45725 * 17 16 11 19 19 C 1.47862 * 119.99850 * 186.45284 * 17 16 11 20 20 C 1.39617 * 120.11126 * 12.20554 * 19 17 16 21 21 C 1.37981 * 119.99609 * 179.74294 * 20 19 17 22 22 C 1.38262 * 120.21924 * 0.55336 * 21 20 19 23 23 C 1.38944 * 120.22303 * 359.70323 * 22 21 20 24 24 N 1.39979 * 119.99732 * 180.02562 * 23 22 21 25 25 C 1.34773 * 119.99711 * 214.03510 * 24 23 22 26 26 N 1.34779 * 120.00239 * 185.96862 * 25 24 23 27 27 O 1.21589 * 120.00093 * 5.96962 * 25 24 23 28 28 C 1.38635 * 120.00116 * 0.02562 * 23 22 21 29 29 H 0.97005 * 120.00122 * 180.02562 * 1 2 3 30 30 H 0.97004 * 120.00228 * 359.97438 * 9 7 2 31 31 H 1.08996 * 109.47371 * 285.74062 * 10 9 7 32 32 H 1.08999 * 109.47334 * 45.74412 * 10 9 7 33 33 H 1.08998 * 110.72018 * 259.97201 * 13 11 10 34 34 H 1.09000 * 110.72040 * 23.24658 * 13 11 10 35 35 H 1.09004 * 111.00315 * 82.57029 * 14 13 11 36 36 H 1.08993 * 111.00399 * 206.38270 * 14 13 11 37 37 H 1.08997 * 110.36336 * 155.84882 * 15 14 13 38 38 H 1.09002 * 110.36655 * 278.06217 * 15 14 13 39 39 H 1.08000 * 120.00315 * 359.97438 * 20 19 17 40 40 H 1.07994 * 119.88823 * 180.25038 * 21 20 19 41 41 H 1.07997 * 119.88701 * 179.71730 * 22 21 20 42 42 H 0.96994 * 120.00081 * 34.03347 * 24 23 22 43 43 H 0.97005 * 119.99301 * 0.02562 * 26 25 24 44 44 H 0.96995 * 120.00586 * 180.02562 * 26 25 24 45 45 H 1.08001 * 120.10503 * 180.02562 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7465 0.0006 5 1 3.1040 1.6964 1.2125 6 1 3.1039 1.6964 -1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 6 1.1023 -4.7975 0.3547 12 1 0.1402 -4.6402 -0.1327 13 6 1.7042 -6.1456 -0.0946 14 6 1.3045 -7.1056 1.0570 15 6 1.4061 -6.1724 2.2893 16 7 0.9229 -4.8637 1.8125 17 6 0.4035 -3.8892 2.5850 18 8 -0.0709 -2.8947 2.0719 19 6 0.4107 -4.0298 4.0569 20 6 1.1711 -5.0329 4.6610 21 6 1.1803 -5.1586 6.0350 22 6 0.4293 -4.3009 6.8174 23 6 -0.3349 -3.3028 6.2255 24 7 -1.0930 -2.4367 7.0221 25 6 -2.2770 -1.9731 6.5752 26 7 -2.9501 -1.0472 7.2867 27 8 -2.7379 -2.3900 5.5302 28 6 -0.3465 -3.1646 4.8461 29 1 -0.4850 -0.8401 0.0004 30 1 0.3555 -2.3881 0.0002 31 1 2.4812 -3.8320 -0.9896 32 1 2.8608 -3.6128 0.7355 33 1 1.2634 -6.4697 -1.0373 34 1 2.7886 -6.0749 -0.1788 35 1 0.2857 -7.4702 0.9259 36 1 2.0070 -7.9353 1.1355 37 1 0.7724 -6.5397 3.0965 38 1 2.4407 -6.0975 2.6242 39 1 1.7550 -5.7081 4.0531 40 1 1.7722 -5.9326 6.5007 41 1 0.4369 -4.4070 7.8921 42 1 -0.7663 -2.1703 7.8956 43 1 -2.5822 -0.7143 8.1202 44 1 -3.8024 -0.7138 6.9653 45 1 -0.9396 -2.3891 4.3843 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324275837.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:06:12 Heat of formation + Delta-G solvation = -24.903978 kcal Electronic energy + Delta-G solvation = -29206.323045 eV Core-core repulsion = 25223.819534 eV Total energy + Delta-G solvation = -3982.503511 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.90922 -41.24231 -39.45798 -38.35841 -36.66859 -35.91252 -34.77506 -33.49127 -32.77009 -31.80167 -30.69425 -29.78277 -26.66454 -25.63942 -24.67083 -24.15272 -22.95229 -22.22492 -21.92223 -20.57398 -19.44437 -19.42175 -18.97883 -17.79519 -17.58385 -17.37931 -17.01479 -16.55301 -16.13339 -15.89563 -15.78216 -15.60295 -15.25522 -15.22479 -14.97067 -14.76263 -14.50934 -14.16547 -13.88252 -13.76978 -13.54112 -13.12532 -12.75935 -12.68364 -12.58275 -12.57244 -12.18166 -11.90235 -11.84276 -11.62238 -11.53210 -11.38259 -11.19025 -10.93962 -10.82766 -10.76686 -9.99781 -9.60965 -9.19183 -8.97101 -8.36363 -5.23969 -0.12251 0.30612 1.46420 1.61238 1.64195 1.76976 1.84849 2.00712 2.08528 2.71030 2.88823 3.37392 3.44714 3.49820 3.59342 3.72845 3.91324 3.96222 4.10343 4.14790 4.20025 4.24766 4.34753 4.41726 4.52428 4.52646 4.68729 4.72465 4.83204 4.87549 4.96516 5.06107 5.12950 5.16762 5.28334 5.34130 5.37782 5.40077 5.52263 5.57982 5.76817 5.84722 5.96494 6.52007 6.58501 6.90070 7.15715 7.35138 7.45875 8.12049 8.23709 9.16318 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.008080 B = 0.004995 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3464.696245 B = 5604.412370 C = 8181.136584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.113 4.113 3 Si 1.131 2.869 4 H -0.292 1.292 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.332 4.332 8 H 0.059 0.941 9 N -0.745 5.745 10 C 0.152 3.848 11 C 0.127 3.873 12 H 0.038 0.962 13 C -0.113 4.113 14 C -0.119 4.119 15 C 0.079 3.921 16 N -0.611 5.611 17 C 0.541 3.459 18 O -0.554 6.554 19 C -0.129 4.129 20 C -0.125 4.125 21 C -0.092 4.092 22 C -0.108 4.108 23 C 0.145 3.855 24 N -0.669 5.669 25 C 0.691 3.309 26 N -0.836 5.836 27 O -0.631 6.631 28 C -0.102 4.102 29 H 0.239 0.761 30 H 0.362 0.638 31 H 0.027 0.973 32 H 0.017 0.983 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.076 0.924 36 H 0.127 0.873 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.175 0.825 40 H 0.185 0.815 41 H 0.177 0.823 42 H 0.430 0.570 43 H 0.419 0.581 44 H 0.423 0.577 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.371 -18.483 21.314 28.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.304 4.304 3 Si 0.955 3.045 4 H -0.218 1.218 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.463 4.463 8 H 0.077 0.923 9 N -0.390 5.390 10 C 0.024 3.976 11 C 0.023 3.977 12 H 0.056 0.944 13 C -0.151 4.151 14 C -0.156 4.156 15 C -0.041 4.041 16 N -0.346 5.346 17 C 0.331 3.669 18 O -0.431 6.431 19 C -0.132 4.132 20 C -0.143 4.143 21 C -0.110 4.110 22 C -0.129 4.129 23 C 0.050 3.950 24 N -0.320 5.320 25 C 0.390 3.610 26 N -0.406 5.406 27 O -0.511 6.511 28 C -0.123 4.123 29 H 0.049 0.951 30 H 0.195 0.805 31 H 0.045 0.955 32 H 0.035 0.965 33 H 0.113 0.887 34 H 0.112 0.888 35 H 0.095 0.905 36 H 0.145 0.855 37 H 0.119 0.881 38 H 0.114 0.886 39 H 0.192 0.808 40 H 0.203 0.797 41 H 0.194 0.806 42 H 0.270 0.730 43 H 0.251 0.749 44 H 0.256 0.744 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.877 -16.622 20.252 26.485 hybrid contribution -0.954 -0.226 0.056 0.982 sum 2.923 -16.847 20.308 26.548 Atomic orbital electron populations 1.70870 1.07368 1.27722 1.56034 1.27351 0.97147 1.04920 1.00936 0.82644 0.73306 0.71390 0.77159 1.21800 1.20908 1.19416 1.20334 0.91691 0.87666 1.46633 0.92259 1.42668 1.04970 1.01575 1.89788 1.21162 0.93805 0.85445 0.97193 1.21921 0.97471 0.97341 0.80977 0.94368 1.22644 1.02101 0.90223 1.00136 1.22864 1.03777 0.97321 0.91663 1.23146 1.00613 0.81210 0.99149 1.48402 1.62036 1.16795 1.07329 1.18731 0.78219 0.82214 0.87754 1.90921 1.45703 1.31116 1.75359 1.19782 1.02158 0.99964 0.91346 1.22563 0.97875 0.96581 0.97323 1.21490 0.98231 0.99426 0.91875 1.21524 0.96906 0.91952 1.02505 1.17494 0.95606 0.93269 0.88623 1.42268 1.18824 1.49189 1.21715 1.16357 0.81054 0.80452 0.83186 1.42701 1.26365 1.43560 1.27990 1.91059 1.70217 1.63514 1.26312 1.21028 0.98346 0.98847 0.94128 0.95061 0.80452 0.95529 0.96482 0.88697 0.88821 0.90506 0.85483 0.88136 0.88632 0.80811 0.79746 0.80568 0.72968 0.74871 0.74373 0.89596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -72.00 13.70 21.65 0.30 -71.71 16 2 C -0.11 -7.65 5.50 84.86 0.47 -7.18 16 3 Si 1.13 59.58 29.92 68.60 2.05 61.63 16 4 H -0.29 -15.52 7.11 99.48 0.71 -14.81 16 5 H -0.28 -13.93 7.11 99.48 0.71 -13.23 16 6 H -0.27 -12.75 7.11 99.48 0.71 -12.05 16 7 C -0.33 -21.98 9.99 84.04 0.84 -21.14 16 8 H 0.06 3.78 7.83 -2.91 -0.02 3.75 16 9 N -0.74 -45.95 4.12 -343.46 -1.42 -47.36 16 10 C 0.15 7.17 5.60 86.38 0.48 7.66 16 11 C 0.13 4.80 3.03 45.34 0.14 4.94 16 12 H 0.04 1.69 7.95 -2.39 -0.02 1.67 16 13 C -0.11 -2.56 6.40 31.78 0.20 -2.36 16 14 C -0.12 -1.88 7.08 31.99 0.23 -1.65 16 15 C 0.08 1.66 4.90 86.86 0.43 2.08 16 16 N -0.61 -22.26 3.05 -791.40 -2.42 -24.68 16 17 C 0.54 25.33 7.50 86.79 0.65 25.98 16 18 O -0.55 -34.01 13.65 -3.86 -0.05 -34.07 16 19 C -0.13 -4.88 5.83 -20.10 -0.12 -5.00 16 20 C -0.13 -2.99 8.23 22.54 0.19 -2.80 16 21 C -0.09 -1.46 10.02 22.21 0.22 -1.24 16 22 C -0.11 -1.87 9.96 22.44 0.22 -1.64 16 23 C 0.15 4.05 6.26 38.10 0.24 4.29 16 24 N -0.67 -14.79 5.35 -317.27 -1.70 -16.48 16 25 C 0.69 19.83 8.56 179.05 1.53 21.36 16 26 N -0.84 -14.03 8.88 -184.74 -1.64 -15.67 16 27 O -0.63 -27.06 14.94 -4.00 -0.06 -27.12 16 28 C -0.10 -4.14 8.19 22.66 0.19 -3.96 16 29 H 0.24 18.45 6.78 -92.70 -0.63 17.83 16 30 H 0.36 24.43 4.88 -92.71 -0.45 23.98 16 31 H 0.03 1.21 8.01 -2.39 -0.02 1.19 16 32 H 0.02 0.83 8.13 -2.39 -0.02 0.81 16 33 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.09 1.89 7.85 -2.39 -0.02 1.87 16 35 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.13 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.10 1.77 6.21 -2.39 -0.01 1.76 16 38 H 0.10 1.56 7.17 -2.39 -0.02 1.54 16 39 H 0.18 3.10 3.54 -2.91 -0.01 3.09 16 40 H 0.19 1.04 8.06 -2.91 -0.02 1.02 16 41 H 0.18 1.30 8.06 -2.91 -0.02 1.28 16 42 H 0.43 4.76 8.84 -92.71 -0.82 3.94 16 43 H 0.42 3.08 8.85 -92.70 -0.82 2.26 16 44 H 0.42 6.83 8.93 -92.71 -0.83 6.00 16 45 H 0.09 4.56 6.13 -2.91 -0.02 4.54 16 Total: -1.00 -114.84 363.62 -0.72 -115.56 By element: Atomic # 1 Polarization: 42.26 SS G_CDS: -1.69 Total: 40.56 kcal Atomic # 6 Polarization: 13.42 SS G_CDS: 5.90 Total: 19.33 kcal Atomic # 7 Polarization: -169.03 SS G_CDS: -6.87 Total: -175.90 kcal Atomic # 8 Polarization: -61.07 SS G_CDS: -0.11 Total: -61.18 kcal Atomic # 14 Polarization: 59.58 SS G_CDS: 2.05 Total: 61.63 kcal Total: -114.84 -0.72 -115.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324275837.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.659 kcal (2) G-P(sol) polarization free energy of solvation -114.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -115.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds