Wall clock time and date at job start Sat Apr 11 2020 03:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86792 * 120.00212 * 2 1 4 4 H 1.48501 * 109.47073 * 240.00042 * 3 2 1 5 5 H 1.48506 * 109.47408 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47211 * 120.00221 * 3 2 1 7 7 C 1.38813 * 119.99419 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99567 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00530 * 359.97438 * 7 2 1 10 10 C 1.46494 * 120.00445 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47551 * 186.48379 * 10 9 7 12 12 H 1.08999 * 109.99574 * 318.38394 * 11 10 9 13 13 C 1.54329 * 109.99188 * 197.34388 * 11 10 9 14 14 C 1.55166 * 103.02092 * 218.66507 * 13 11 10 15 15 C 1.54914 * 101.57824 * 35.30592 * 14 13 11 16 16 N 1.47018 * 109.88103 * 79.47470 * 11 10 9 17 17 C 1.34779 * 125.65079 * 298.39772 * 16 11 10 18 18 O 1.21556 * 119.99612 * 355.39027 * 17 16 11 19 19 C 1.47853 * 120.00158 * 175.67499 * 17 16 11 20 20 C 1.39619 * 120.11169 * 344.02305 * 19 17 16 21 21 C 1.37982 * 119.99256 * 180.02562 * 20 19 17 22 22 C 1.38253 * 120.22423 * 0.02562 * 21 20 19 23 23 C 1.38941 * 120.22552 * 359.95941 * 22 21 20 24 24 N 1.39975 * 119.99586 * 180.02562 * 23 22 21 25 25 C 1.34781 * 119.99701 * 213.89040 * 24 23 22 26 26 N 1.34779 * 120.00152 * 185.69661 * 25 24 23 27 27 O 1.21585 * 119.99929 * 5.69808 * 25 24 23 28 28 C 1.38627 * 119.99949 * 359.76398 * 23 22 21 29 29 H 0.97004 * 119.99504 * 0.02562 * 1 2 3 30 30 H 0.97001 * 119.99517 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.47038 * 66.48187 * 10 9 7 32 32 H 1.09000 * 109.47486 * 306.48694 * 10 9 7 33 33 H 1.09004 * 110.85382 * 100.19731 * 13 11 10 34 34 H 1.09003 * 110.66860 * 337.04442 * 13 11 10 35 35 H 1.09006 * 111.00049 * 277.23529 * 14 13 11 36 36 H 1.08997 * 111.00774 * 153.38070 * 14 13 11 37 37 H 1.08994 * 110.36210 * 204.15381 * 15 14 13 38 38 H 1.08997 * 110.36274 * 81.83052 * 15 14 13 39 39 H 1.07996 * 119.99980 * 0.03154 * 20 19 17 40 40 H 1.08003 * 119.88360 * 180.02562 * 21 20 19 41 41 H 1.08003 * 119.88736 * 179.97438 * 22 21 20 42 42 H 0.96991 * 120.00351 * 33.88998 * 24 23 22 43 43 H 0.97001 * 119.99532 * 0.02562 * 26 25 24 44 44 H 0.96999 * 119.99818 * 179.97438 * 26 25 24 45 45 H 1.08008 * 120.11028 * 180.28115 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2854 2.7465 -0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2023 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 6 1.0716 -4.8151 -0.1634 12 1 0.1842 -4.6373 0.4440 13 6 1.7389 -6.1401 0.2621 14 6 1.1963 -7.1548 -0.7788 15 6 1.1187 -6.2798 -2.0548 16 7 0.6908 -4.9525 -1.5768 17 6 0.0602 -4.0176 -2.3148 18 8 -0.3166 -2.9854 -1.7951 19 6 -0.1790 -4.2503 -3.7552 20 6 0.5192 -5.2550 -4.4278 21 6 0.2945 -5.4697 -5.7722 22 6 -0.6204 -4.6922 -6.4577 23 6 -1.3205 -3.6901 -5.7974 24 7 -2.2461 -2.9062 -6.4960 25 6 -2.4150 -1.6099 -6.1679 26 7 -3.3846 -0.8854 -6.7607 27 8 -1.6925 -1.0940 -5.3371 28 6 -1.1062 -3.4701 -4.4456 29 1 -0.4849 0.8401 -0.0004 30 1 0.3555 -2.3880 -0.0005 31 1 2.5947 -3.7665 0.9418 32 1 2.7688 -3.6661 -0.8268 33 1 1.4344 -6.4217 1.2702 34 1 2.8242 -6.0629 0.1960 35 1 0.2089 -7.5174 -0.4930 36 1 1.8908 -7.9838 -0.9152 37 1 0.3848 -6.6874 -2.7501 38 1 2.0974 -6.2145 -2.5301 39 1 1.2349 -5.8642 -3.8959 40 1 0.8352 -6.2477 -6.2907 41 1 -0.7917 -4.8647 -7.5100 42 1 -2.7659 -3.2958 -7.2163 43 1 -3.9612 -1.2971 -7.4232 44 1 -3.5064 0.0474 -6.5242 45 1 -1.6528 -2.6946 -3.9295 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324275848.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:06:15 Heat of formation + Delta-G solvation = 15.845640 kcal Electronic energy + Delta-G solvation = -29190.282897 eV Core-core repulsion = 25209.546422 eV Total energy + Delta-G solvation = -3980.736475 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.70420 -39.88370 -38.26843 -36.77009 -34.83573 -34.11152 -33.70980 -31.74870 -31.09375 -30.62140 -29.36909 -28.41703 -25.13751 -24.12892 -23.29185 -22.47816 -21.39167 -21.02935 -20.81737 -19.07216 -18.41923 -17.97994 -16.89657 -16.36718 -16.30772 -16.20036 -15.49462 -15.15379 -14.76574 -14.49301 -14.26478 -14.02109 -13.79970 -13.57496 -13.40251 -13.21702 -12.83624 -12.76365 -12.70821 -12.25643 -11.81103 -11.66765 -11.45848 -11.38091 -11.02773 -10.75548 -10.57545 -10.53601 -10.42405 -10.36474 -10.14287 -9.81917 -9.78987 -9.40675 -8.98245 -8.77870 -8.55446 -8.12503 -8.02207 -6.48748 -5.36021 -2.63510 1.05969 1.43224 2.63139 3.02918 3.36717 3.48428 3.64367 3.68309 3.69800 4.14225 4.25419 4.61727 4.65815 4.86795 4.90758 4.96886 5.02838 5.14185 5.30499 5.43044 5.47383 5.53184 5.57472 5.63734 5.80724 5.89358 5.92218 5.94833 6.07929 6.16318 6.19477 6.31315 6.33782 6.40741 6.53599 6.60930 6.65261 6.71728 6.75626 6.93842 7.03549 7.14933 7.71227 7.98212 8.07958 8.48614 8.77241 8.96488 9.93300 10.57968 10.95537 11.85094 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.007920 B = 0.005249 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3534.398014 B = 5333.477125 C = 8320.229362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.009 4.009 3 Si 0.898 3.102 4 H -0.289 1.289 5 H -0.293 1.293 6 H -0.289 1.289 7 C -0.239 4.239 8 H 0.061 0.939 9 N -0.720 5.720 10 C 0.147 3.853 11 C 0.131 3.869 12 H 0.075 0.925 13 C -0.124 4.124 14 C -0.135 4.135 15 C 0.093 3.907 16 N -0.614 5.614 17 C 0.550 3.450 18 O -0.453 6.453 19 C -0.093 4.093 20 C -0.131 4.131 21 C -0.111 4.111 22 C -0.134 4.134 23 C 0.154 3.846 24 N -0.687 5.687 25 C 0.695 3.305 26 N -0.863 5.863 27 O -0.551 6.551 28 C -0.062 4.062 29 H 0.250 0.750 30 H 0.397 0.603 31 H 0.017 0.983 32 H 0.018 0.982 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.147 0.853 40 H 0.128 0.872 41 H 0.124 0.876 42 H 0.404 0.596 43 H 0.395 0.605 44 H 0.419 0.581 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.409 -18.541 -15.983 25.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.205 4.205 3 Si 0.730 3.270 4 H -0.217 1.217 5 H -0.219 1.219 6 H -0.216 1.216 7 C -0.371 4.371 8 H 0.079 0.921 9 N -0.368 5.368 10 C 0.018 3.982 11 C 0.028 3.972 12 H 0.093 0.907 13 C -0.163 4.163 14 C -0.173 4.173 15 C -0.030 4.030 16 N -0.351 5.351 17 C 0.337 3.663 18 O -0.323 6.323 19 C -0.097 4.097 20 C -0.150 4.150 21 C -0.130 4.130 22 C -0.155 4.155 23 C 0.059 3.941 24 N -0.336 5.336 25 C 0.394 3.606 26 N -0.432 5.432 27 O -0.424 6.424 28 C -0.083 4.083 29 H 0.060 0.940 30 H 0.236 0.764 31 H 0.035 0.965 32 H 0.035 0.965 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.086 0.914 39 H 0.164 0.836 40 H 0.146 0.854 41 H 0.142 0.858 42 H 0.240 0.760 43 H 0.223 0.777 44 H 0.252 0.748 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -4.950 -17.356 -15.005 23.471 hybrid contribution -0.279 1.032 -0.910 1.404 sum -5.228 -16.324 -15.915 23.390 Atomic orbital electron populations 1.69722 1.04784 1.24771 1.57015 1.24681 0.95346 0.97102 1.03413 0.86413 0.78541 0.84611 0.77470 1.21656 1.21877 1.21630 1.19061 0.90430 0.84645 1.42965 0.92133 1.42612 1.06768 0.98935 1.88531 1.20992 0.93234 0.86565 0.97449 1.21872 0.98367 0.95360 0.81575 0.90713 1.22638 1.00921 0.93531 0.99174 1.22819 1.01876 0.97462 0.95100 1.22648 0.99521 0.83863 0.97001 1.48304 1.59720 1.15299 1.11827 1.17929 0.79481 0.83339 0.85564 1.91032 1.46468 1.23725 1.71068 1.19914 0.98487 0.96996 0.94257 1.22161 1.00117 0.97587 0.95091 1.20821 0.98147 0.99839 0.94147 1.20924 0.97361 0.97773 0.99431 1.17304 0.92797 0.93299 0.90652 1.42502 1.42909 1.09386 1.38804 1.16072 0.81681 0.81047 0.81845 1.42955 1.36864 1.15894 1.47527 1.91197 1.46458 1.70025 1.34745 1.21319 0.97241 0.97914 0.91845 0.94022 0.76391 0.96520 0.96452 0.90200 0.90423 0.90729 0.90165 0.90124 0.91441 0.83594 0.85382 0.85783 0.76048 0.77737 0.74809 0.83297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -31.43 13.06 55.49 0.72 -30.70 16 2 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 3 Si 0.90 25.10 29.55 -169.99 -5.02 20.08 16 4 H -0.29 -8.04 7.11 56.52 0.40 -7.64 16 5 H -0.29 -8.18 7.11 56.52 0.40 -7.77 16 6 H -0.29 -7.80 7.11 56.52 0.40 -7.39 16 7 C -0.24 -7.62 9.99 -15.06 -0.15 -7.77 16 8 H 0.06 1.86 7.83 -52.48 -0.41 1.45 16 9 N -0.72 -21.04 4.37 -59.91 -0.26 -21.30 16 10 C 0.15 3.35 5.61 -4.04 -0.02 3.32 16 11 C 0.13 2.38 3.02 -66.95 -0.20 2.18 16 12 H 0.07 1.50 8.04 -51.93 -0.42 1.08 16 13 C -0.12 -1.54 6.42 -24.89 -0.16 -1.70 16 14 C -0.13 -1.31 7.09 -24.58 -0.17 -1.49 16 15 C 0.09 1.09 4.92 -2.53 -0.01 1.08 16 16 N -0.61 -10.75 3.06 -164.12 -0.50 -11.25 16 17 C 0.55 11.75 7.50 -12.32 -0.09 11.66 16 18 O -0.45 -12.43 13.27 5.32 0.07 -12.36 16 19 C -0.09 -1.65 5.80 -104.99 -0.61 -2.26 16 20 C -0.13 -1.73 8.14 -39.16 -0.32 -2.05 16 21 C -0.11 -1.18 10.02 -39.67 -0.40 -1.58 16 22 C -0.13 -1.45 9.95 -39.32 -0.39 -1.84 16 23 C 0.15 2.15 6.26 -83.73 -0.52 1.62 16 24 N -0.69 -7.62 5.35 -14.25 -0.08 -7.70 16 25 C 0.70 9.77 8.56 -86.91 -0.74 9.03 16 26 N -0.86 -7.41 8.88 27.64 0.25 -7.16 16 27 O -0.55 -11.57 14.94 5.29 0.08 -11.49 16 28 C -0.06 -1.14 8.19 -38.98 -0.32 -1.46 16 29 H 0.25 8.32 8.31 -40.82 -0.34 7.98 16 30 H 0.40 12.48 5.38 -40.82 -0.22 12.27 16 31 H 0.02 0.38 8.04 -51.93 -0.42 -0.04 16 32 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.08 0.92 7.85 -51.93 -0.41 0.51 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.82 6.21 -51.93 -0.32 0.50 16 38 H 0.07 0.72 7.16 -51.93 -0.37 0.35 16 39 H 0.15 1.62 3.76 -52.49 -0.20 1.43 16 40 H 0.13 0.93 8.06 -52.48 -0.42 0.51 16 41 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 42 H 0.40 2.55 8.84 -40.82 -0.36 2.19 16 43 H 0.40 1.69 8.85 -40.82 -0.36 1.33 16 44 H 0.42 3.50 8.93 -40.82 -0.36 3.14 16 45 H 0.15 3.32 6.16 -52.48 -0.32 3.00 16 LS Contribution 364.80 15.07 5.50 5.50 Total: -1.00 -44.47 364.80 -9.31 -53.78 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: -5.85 Total: 14.25 kcal Atomic # 6 Polarization: 12.58 SS G_CDS: -4.21 Total: 8.36 kcal Atomic # 7 Polarization: -78.24 SS G_CDS: 0.13 Total: -78.11 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: 0.15 Total: -23.86 kcal Atomic # 14 Polarization: 25.10 SS G_CDS: -5.02 Total: 20.08 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -44.47 -9.31 -53.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324275848.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.626 kcal (2) G-P(sol) polarization free energy of solvation -44.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds