Wall clock time and date at job start Sat Apr 11 2020 03:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86792 * 120.00212 * 2 1 4 4 H 1.48501 * 109.47073 * 240.00042 * 3 2 1 5 5 H 1.48506 * 109.47408 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47211 * 120.00221 * 3 2 1 7 7 C 1.38813 * 119.99419 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99567 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00530 * 359.97438 * 7 2 1 10 10 C 1.46494 * 120.00445 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47551 * 186.48379 * 10 9 7 12 12 H 1.08999 * 109.99574 * 318.38394 * 11 10 9 13 13 C 1.54329 * 109.99188 * 197.34388 * 11 10 9 14 14 C 1.55166 * 103.02092 * 218.66507 * 13 11 10 15 15 C 1.54914 * 101.57824 * 35.30592 * 14 13 11 16 16 N 1.47018 * 109.88103 * 79.47470 * 11 10 9 17 17 C 1.34779 * 125.65079 * 298.39772 * 16 11 10 18 18 O 1.21556 * 119.99612 * 355.39027 * 17 16 11 19 19 C 1.47853 * 120.00158 * 175.67499 * 17 16 11 20 20 C 1.39619 * 120.11169 * 344.02305 * 19 17 16 21 21 C 1.37982 * 119.99256 * 180.02562 * 20 19 17 22 22 C 1.38253 * 120.22423 * 0.02562 * 21 20 19 23 23 C 1.38941 * 120.22552 * 359.95941 * 22 21 20 24 24 N 1.39975 * 119.99586 * 180.02562 * 23 22 21 25 25 C 1.34781 * 119.99701 * 213.89040 * 24 23 22 26 26 N 1.34779 * 120.00152 * 185.69661 * 25 24 23 27 27 O 1.21585 * 119.99929 * 5.69808 * 25 24 23 28 28 C 1.38627 * 119.99949 * 359.76398 * 23 22 21 29 29 H 0.97004 * 119.99504 * 0.02562 * 1 2 3 30 30 H 0.97001 * 119.99517 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.47038 * 66.48187 * 10 9 7 32 32 H 1.09000 * 109.47486 * 306.48694 * 10 9 7 33 33 H 1.09004 * 110.85382 * 100.19731 * 13 11 10 34 34 H 1.09003 * 110.66860 * 337.04442 * 13 11 10 35 35 H 1.09006 * 111.00049 * 277.23529 * 14 13 11 36 36 H 1.08997 * 111.00774 * 153.38070 * 14 13 11 37 37 H 1.08994 * 110.36210 * 204.15381 * 15 14 13 38 38 H 1.08997 * 110.36274 * 81.83052 * 15 14 13 39 39 H 1.07996 * 119.99980 * 0.03154 * 20 19 17 40 40 H 1.08003 * 119.88360 * 180.02562 * 21 20 19 41 41 H 1.08003 * 119.88736 * 179.97438 * 22 21 20 42 42 H 0.96991 * 120.00351 * 33.88998 * 24 23 22 43 43 H 0.97001 * 119.99532 * 0.02562 * 26 25 24 44 44 H 0.96999 * 119.99818 * 179.97438 * 26 25 24 45 45 H 1.08008 * 120.11028 * 180.28115 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2854 2.7465 -0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2023 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 6 1.0716 -4.8151 -0.1634 12 1 0.1842 -4.6373 0.4440 13 6 1.7389 -6.1401 0.2621 14 6 1.1963 -7.1548 -0.7788 15 6 1.1187 -6.2798 -2.0548 16 7 0.6908 -4.9525 -1.5768 17 6 0.0602 -4.0176 -2.3148 18 8 -0.3166 -2.9854 -1.7951 19 6 -0.1790 -4.2503 -3.7552 20 6 0.5192 -5.2550 -4.4278 21 6 0.2945 -5.4697 -5.7722 22 6 -0.6204 -4.6922 -6.4577 23 6 -1.3205 -3.6901 -5.7974 24 7 -2.2461 -2.9062 -6.4960 25 6 -2.4150 -1.6099 -6.1679 26 7 -3.3846 -0.8854 -6.7607 27 8 -1.6925 -1.0940 -5.3371 28 6 -1.1062 -3.4701 -4.4456 29 1 -0.4849 0.8401 -0.0004 30 1 0.3555 -2.3880 -0.0005 31 1 2.5947 -3.7665 0.9418 32 1 2.7688 -3.6661 -0.8268 33 1 1.4344 -6.4217 1.2702 34 1 2.8242 -6.0629 0.1960 35 1 0.2089 -7.5174 -0.4930 36 1 1.8908 -7.9838 -0.9152 37 1 0.3848 -6.6874 -2.7501 38 1 2.0974 -6.2145 -2.5301 39 1 1.2349 -5.8642 -3.8959 40 1 0.8352 -6.2477 -6.2907 41 1 -0.7917 -4.8647 -7.5100 42 1 -2.7659 -3.2958 -7.2163 43 1 -3.9612 -1.2971 -7.4232 44 1 -3.5064 0.0474 -6.5242 45 1 -1.6528 -2.6946 -3.9295 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324275848.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:06:14 Heat of formation + Delta-G solvation = -22.858117 kcal Electronic energy + Delta-G solvation = -29191.961218 eV Core-core repulsion = 25209.546422 eV Total energy + Delta-G solvation = -3982.414796 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.85379 -41.17750 -39.40654 -38.25429 -36.36855 -35.83761 -34.74088 -33.44955 -32.71922 -31.74071 -30.73349 -29.84038 -26.82504 -25.63813 -24.54968 -24.03560 -22.82085 -22.15720 -21.87165 -20.46527 -19.41988 -19.35938 -18.81577 -17.69003 -17.48562 -17.29345 -16.80790 -16.52420 -16.35616 -15.93865 -15.63154 -15.31135 -15.24974 -15.02618 -14.85112 -14.69720 -14.42887 -14.10226 -13.78495 -13.63414 -13.29372 -13.18571 -12.96099 -12.78075 -12.65155 -12.57895 -12.32270 -12.00681 -11.71263 -11.67561 -11.59622 -11.46112 -11.25814 -10.92815 -10.80468 -10.65044 -9.93560 -9.49914 -9.14671 -8.85694 -7.85223 -5.13584 -0.05805 0.34910 1.34632 1.42784 1.48007 1.67889 1.89739 2.06212 2.18017 2.55374 2.93236 3.41570 3.44707 3.56552 3.67277 3.82411 3.99107 4.03410 4.15985 4.25577 4.29574 4.39391 4.43154 4.48395 4.57956 4.62618 4.80294 4.81092 4.92222 4.93472 5.03812 5.15706 5.19654 5.21769 5.33082 5.41066 5.41947 5.44899 5.46167 5.65889 5.80912 5.86451 6.00908 6.31538 6.67980 6.94755 7.33565 7.47938 7.50977 8.28432 8.49658 9.37085 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.007920 B = 0.005249 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3534.398014 B = 5333.477125 C = 8320.229362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.082 4.082 3 Si 0.973 3.027 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.267 1.267 7 C -0.248 4.248 8 H 0.068 0.932 9 N -0.737 5.737 10 C 0.144 3.856 11 C 0.129 3.871 12 H 0.042 0.958 13 C -0.113 4.113 14 C -0.118 4.118 15 C 0.080 3.920 16 N -0.612 5.612 17 C 0.535 3.465 18 O -0.540 6.540 19 C -0.126 4.126 20 C -0.123 4.123 21 C -0.093 4.093 22 C -0.110 4.110 23 C 0.145 3.855 24 N -0.666 5.666 25 C 0.688 3.312 26 N -0.836 5.836 27 O -0.631 6.631 28 C -0.101 4.101 29 H 0.242 0.758 30 H 0.382 0.618 31 H 0.030 0.970 32 H 0.010 0.990 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.124 0.876 37 H 0.103 0.897 38 H 0.090 0.910 39 H 0.172 0.828 40 H 0.184 0.816 41 H 0.176 0.824 42 H 0.431 0.569 43 H 0.420 0.580 44 H 0.422 0.578 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.418 -22.846 -19.243 30.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.609 5.609 2 C -0.274 4.274 3 Si 0.801 3.199 4 H -0.212 1.212 5 H -0.222 1.222 6 H -0.192 1.192 7 C -0.380 4.380 8 H 0.086 0.914 9 N -0.384 5.384 10 C 0.016 3.984 11 C 0.025 3.975 12 H 0.060 0.940 13 C -0.152 4.152 14 C -0.155 4.155 15 C -0.040 4.040 16 N -0.347 5.347 17 C 0.324 3.676 18 O -0.417 6.417 19 C -0.129 4.129 20 C -0.141 4.141 21 C -0.111 4.111 22 C -0.131 4.131 23 C 0.050 3.950 24 N -0.318 5.318 25 C 0.386 3.614 26 N -0.406 5.406 27 O -0.510 6.510 28 C -0.123 4.123 29 H 0.051 0.949 30 H 0.218 0.782 31 H 0.047 0.953 32 H 0.028 0.972 33 H 0.114 0.886 34 H 0.109 0.891 35 H 0.098 0.902 36 H 0.143 0.857 37 H 0.121 0.879 38 H 0.108 0.892 39 H 0.188 0.812 40 H 0.201 0.799 41 H 0.193 0.807 42 H 0.271 0.729 43 H 0.252 0.748 44 H 0.255 0.745 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.956 -21.797 -18.335 28.636 hybrid contribution -0.914 2.245 0.009 2.424 sum -3.870 -19.552 -18.326 27.076 Atomic orbital electron populations 1.69978 1.06830 1.25048 1.59031 1.25671 0.96338 1.01287 1.04120 0.85227 0.77161 0.79291 0.78179 1.21159 1.22160 1.19210 1.19560 0.90931 0.86083 1.41444 0.91385 1.42889 1.06443 1.00595 1.88425 1.21229 0.93935 0.85968 0.97258 1.21871 0.96381 0.96946 0.82267 0.94011 1.22639 1.01160 0.90474 1.00897 1.22855 1.03219 0.97244 0.92215 1.23120 1.01049 0.80979 0.98881 1.48425 1.58033 1.16838 1.11365 1.18778 0.78553 0.82821 0.87401 1.90979 1.50333 1.27389 1.72949 1.19792 1.00815 0.99850 0.92476 1.22443 0.99285 0.95924 0.96492 1.21466 0.97006 0.99853 0.92749 1.21497 0.95067 0.94987 1.01504 1.17489 0.93891 0.94477 0.89180 1.42229 1.42638 1.08125 1.38789 1.16432 0.81790 0.81983 0.81190 1.42689 1.35363 1.15683 1.46867 1.91169 1.49693 1.71846 1.38293 1.21041 0.98961 0.98042 0.94240 0.94908 0.78171 0.95271 0.97223 0.88619 0.89095 0.90234 0.85743 0.87900 0.89195 0.81155 0.79903 0.80695 0.72901 0.74810 0.74515 0.89449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -70.83 13.06 21.65 0.28 -70.55 16 2 C -0.08 -5.62 5.50 84.86 0.47 -5.15 16 3 Si 0.97 54.23 29.55 68.60 2.03 56.26 16 4 H -0.28 -15.51 7.11 99.48 0.71 -14.80 16 5 H -0.30 -16.42 7.11 99.48 0.71 -15.72 16 6 H -0.27 -13.74 7.11 99.48 0.71 -13.03 16 7 C -0.25 -16.62 9.99 84.03 0.84 -15.78 16 8 H 0.07 4.33 7.83 -2.91 -0.02 4.30 16 9 N -0.74 -46.26 4.37 -343.46 -1.50 -47.76 16 10 C 0.14 6.86 5.61 86.38 0.48 7.35 16 11 C 0.13 4.87 3.02 45.34 0.14 5.00 16 12 H 0.04 1.83 8.04 -2.39 -0.02 1.81 16 13 C -0.11 -2.55 6.42 31.79 0.20 -2.34 16 14 C -0.12 -1.79 7.09 31.99 0.23 -1.57 16 15 C 0.08 1.64 4.92 86.86 0.43 2.07 16 16 N -0.61 -22.08 3.06 -791.41 -2.42 -24.50 16 17 C 0.54 24.95 7.50 86.79 0.65 25.60 16 18 O -0.54 -33.47 13.27 -3.89 -0.05 -33.52 16 19 C -0.13 -4.73 5.80 -20.10 -0.12 -4.84 16 20 C -0.12 -2.94 8.14 22.54 0.18 -2.75 16 21 C -0.09 -1.47 10.02 22.21 0.22 -1.25 16 22 C -0.11 -1.89 9.95 22.44 0.22 -1.67 16 23 C 0.14 4.00 6.26 38.10 0.24 4.24 16 24 N -0.67 -14.52 5.35 -317.27 -1.70 -16.21 16 25 C 0.69 20.50 8.56 179.05 1.53 22.03 16 26 N -0.84 -14.50 8.88 -184.74 -1.64 -16.14 16 27 O -0.63 -29.47 14.94 -3.98 -0.06 -29.53 16 28 C -0.10 -4.07 8.19 22.66 0.19 -3.89 16 29 H 0.24 17.36 8.31 -92.71 -0.77 16.59 16 30 H 0.38 26.39 5.38 -92.71 -0.50 25.89 16 31 H 0.03 1.33 8.04 -2.39 -0.02 1.31 16 32 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.10 1.88 8.14 -2.38 -0.02 1.86 16 34 H 0.09 1.85 7.85 -2.39 -0.02 1.83 16 35 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 36 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.10 1.69 6.21 -2.39 -0.01 1.68 16 38 H 0.09 1.50 7.16 -2.39 -0.02 1.49 16 39 H 0.17 3.08 3.76 -2.91 -0.01 3.07 16 40 H 0.18 1.07 8.06 -2.91 -0.02 1.05 16 41 H 0.18 1.30 8.06 -2.91 -0.02 1.28 16 42 H 0.43 4.32 8.84 -92.71 -0.82 3.50 16 43 H 0.42 2.96 8.85 -92.71 -0.82 2.14 16 44 H 0.42 7.38 8.93 -92.71 -0.83 6.56 16 45 H 0.09 4.58 6.16 -2.91 -0.02 4.56 16 Total: -1.00 -115.96 364.80 -1.04 -117.00 By element: Atomic # 1 Polarization: 39.80 SS G_CDS: -1.88 Total: 37.92 kcal Atomic # 6 Polarization: 21.14 SS G_CDS: 5.91 Total: 27.04 kcal Atomic # 7 Polarization: -168.19 SS G_CDS: -6.98 Total: -175.17 kcal Atomic # 8 Polarization: -62.93 SS G_CDS: -0.11 Total: -63.04 kcal Atomic # 14 Polarization: 54.23 SS G_CDS: 2.03 Total: 56.26 kcal Total: -115.96 -1.04 -117.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324275848.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.137 kcal (2) G-P(sol) polarization free energy of solvation -115.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -116.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds