Wall clock time and date at job start Sat Apr 11 2020 03:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86807 * 119.99924 * 2 1 4 4 H 1.48504 * 109.46556 * 269.99626 * 3 2 1 5 5 H 1.48494 * 109.47157 * 29.99610 * 3 2 1 6 6 H 1.48500 * 109.47208 * 149.99977 * 3 2 1 7 7 C 1.38795 * 120.00203 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00179 * 179.97438 * 7 2 1 9 9 S 1.76200 * 120.00040 * 0.02562 * 7 2 1 10 10 C 1.80997 * 100.00414 * 179.97438 * 9 7 2 11 11 C 1.50704 * 109.47523 * 180.02562 * 10 9 7 12 12 O 1.21274 * 119.99355 * 0.02562 * 11 10 9 13 13 N 1.34770 * 119.99861 * 179.97438 * 11 10 9 14 14 C 1.46505 * 119.99697 * 184.70421 * 13 11 10 15 15 C 1.52994 * 109.50534 * 296.53914 * 14 13 11 16 16 O 1.42899 * 109.47277 * 305.35186 * 15 14 13 17 17 C 1.53114 * 109.50222 * 176.42113 * 14 13 11 18 18 C 1.53122 * 109.16337 * 297.71406 * 17 14 13 19 19 C 1.53041 * 109.27610 * 302.34822 * 18 17 14 20 20 N 1.46852 * 109.52544 * 59.17706 * 19 18 17 21 21 C 1.46897 * 111.00063 * 174.15668 * 20 19 18 22 22 C 1.53002 * 109.47216 * 294.21322 * 21 20 19 23 23 C 1.53007 * 109.46708 * 180.02562 * 22 21 20 24 24 O 1.42901 * 109.46836 * 179.97438 * 23 22 21 25 25 C 1.46845 * 111.19395 * 298.25839 * 20 19 18 26 26 H 0.96997 * 119.99930 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47157 * 60.00142 * 10 9 7 28 28 H 1.09000 * 109.47189 * 300.00035 * 10 9 7 29 29 H 0.96998 * 120.00346 * 4.71009 * 13 11 10 30 30 H 1.09006 * 109.47156 * 65.34841 * 15 14 13 31 31 H 1.08998 * 109.47325 * 185.35129 * 15 14 13 32 32 H 0.96702 * 114.00084 * 179.97438 * 16 15 14 33 33 H 1.08995 * 109.52801 * 57.62104 * 17 14 13 34 34 H 1.09004 * 109.52327 * 177.81380 * 17 14 13 35 35 H 1.08999 * 109.50323 * 62.28251 * 18 17 14 36 36 H 1.08994 * 109.50736 * 182.36649 * 18 17 14 37 37 H 1.08995 * 109.46351 * 299.15888 * 19 18 17 38 38 H 1.09003 * 109.46065 * 179.19113 * 19 18 17 39 39 H 1.09006 * 109.46731 * 54.21338 * 21 20 19 40 40 H 1.09002 * 109.46920 * 174.20763 * 21 20 19 41 41 H 1.08996 * 109.46857 * 299.99340 * 22 21 20 42 42 H 1.08998 * 109.47163 * 59.99813 * 22 21 20 43 43 H 1.08996 * 109.46829 * 299.99244 * 23 22 21 44 44 H 1.09002 * 109.47267 * 59.99539 * 23 22 21 45 45 H 0.96698 * 114.00081 * 179.97438 * 24 23 22 46 46 H 1.09005 * 109.45730 * 181.75502 * 25 20 19 47 47 H 1.08995 * 109.46121 * 301.72302 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0463 -1.4002 5 1 1.4478 2.6527 0.6999 6 1 3.5479 1.4403 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0001 9 16 1.1294 -2.7279 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9874 -5.3028 -0.0001 12 8 0.7912 -5.5022 -0.0010 13 7 2.8442 -6.3431 -0.0007 14 6 2.3338 -7.7123 -0.1054 15 6 1.4717 -8.0310 1.1177 16 8 2.2241 -7.7865 2.3077 17 6 3.5085 -8.6920 -0.1731 18 6 4.3315 -8.4037 -1.4317 19 6 3.4294 -8.5186 -2.6626 20 7 2.3217 -7.5610 -2.5503 21 6 1.5131 -7.5453 -3.7766 22 6 2.3535 -7.0040 -4.9348 23 6 1.5110 -6.9870 -6.2119 24 8 2.2957 -6.4809 -7.2936 25 6 1.4896 -7.8472 -1.3747 26 1 -0.4850 0.8400 -0.0004 27 1 3.1245 -3.7314 0.8905 28 1 3.1245 -3.7314 -0.8894 29 1 3.7988 -6.1853 0.0682 30 1 0.5847 -7.3974 1.1121 31 1 1.1704 -9.0781 1.0870 32 1 1.7386 -7.9674 3.1242 33 1 4.1368 -8.5690 0.7090 34 1 3.1294 -9.7133 -0.2118 35 1 4.7427 -7.3959 -1.3747 36 1 5.1452 -9.1250 -1.5076 37 1 3.0295 -9.5305 -2.7267 38 1 4.0091 -8.2998 -3.5594 39 1 1.1848 -8.5586 -4.0083 40 1 0.6425 -6.9060 -3.6295 41 1 2.6817 -5.9907 -4.7031 42 1 3.2241 -7.6432 -5.0818 43 1 1.1825 -8.0001 -6.4439 44 1 0.6406 -6.3476 -6.0646 45 1 1.8244 -6.4422 -8.1370 46 1 0.6603 -7.1408 -1.3361 47 1 1.0988 -8.8623 -1.4449 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325817468.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:06:16 Heat of formation + Delta-G solvation = -167.768530 kcal Electronic energy + Delta-G solvation = -27679.186042 eV Core-core repulsion = 23793.638660 eV Total energy + Delta-G solvation = -3885.547383 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.59816 -39.42052 -38.15514 -37.50939 -35.82137 -34.57608 -33.91094 -32.34112 -31.94775 -29.82780 -27.63561 -26.87809 -26.72008 -24.01343 -23.29935 -22.10724 -21.48400 -20.16344 -19.80879 -18.35711 -18.23775 -17.84694 -16.96770 -16.92102 -16.87064 -16.76094 -16.36669 -15.93639 -15.56503 -15.25781 -15.20578 -15.00966 -14.61405 -14.53900 -14.25140 -13.96036 -13.90161 -13.64215 -13.29452 -13.24448 -13.13871 -12.88939 -12.85147 -12.63119 -12.57455 -12.11192 -12.01907 -11.80220 -11.68647 -11.45795 -11.36702 -11.13420 -11.07000 -10.87863 -10.38668 -10.24612 -9.86460 -9.22521 -8.62148 -8.33709 -6.09984 1.29151 1.41884 1.47817 1.59631 1.80736 2.27662 2.37038 2.69901 3.00129 3.34279 3.36722 3.47666 3.68541 3.79707 3.92611 4.06545 4.09694 4.22308 4.24898 4.33481 4.34827 4.40773 4.43885 4.45336 4.51058 4.55002 4.60463 4.63286 4.67514 4.71132 4.80443 4.89849 5.00039 5.07424 5.14852 5.21503 5.27879 5.38340 5.42338 5.67840 6.08600 6.20659 6.21500 6.68804 6.85852 6.88084 7.07723 7.42320 8.75519 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.009010 B = 0.003810 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3107.057532 B = 7347.270319 C = 9574.272570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.016 3.984 3 Si 0.996 3.004 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.549 4.549 8 H 0.077 0.923 9 S -0.139 6.139 10 C -0.129 4.129 11 C 0.547 3.453 12 O -0.559 6.559 13 N -0.684 5.684 14 C 0.187 3.813 15 C 0.067 3.933 16 O -0.577 6.577 17 C -0.110 4.110 18 C -0.115 4.115 19 C 0.051 3.949 20 N -0.545 5.545 21 C 0.067 3.933 22 C -0.110 4.110 23 C 0.078 3.922 24 O -0.596 6.596 25 C 0.050 3.950 26 H 0.271 0.729 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.407 0.593 30 H 0.037 0.963 31 H 0.074 0.926 32 H 0.393 0.607 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.062 0.938 36 H 0.094 0.906 37 H 0.045 0.955 38 H 0.081 0.919 39 H 0.052 0.948 40 H 0.057 0.943 41 H 0.049 0.951 42 H 0.075 0.925 43 H 0.065 0.935 44 H 0.044 0.956 45 H 0.398 0.602 46 H 0.067 0.933 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.031 -23.680 -6.178 25.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.189 4.189 3 Si 0.818 3.182 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.697 4.697 8 H 0.095 0.905 9 S 0.088 5.912 10 C -0.280 4.280 11 C 0.333 3.667 12 O -0.438 6.438 13 N -0.336 5.336 14 C 0.101 3.899 15 C -0.013 4.013 16 O -0.384 6.384 17 C -0.148 4.148 18 C -0.153 4.153 19 C -0.076 4.076 20 N -0.269 5.269 21 C -0.061 4.061 22 C -0.148 4.148 23 C -0.001 4.001 24 O -0.405 6.405 25 C -0.079 4.079 26 H 0.080 0.920 27 H 0.115 0.885 28 H 0.115 0.885 29 H 0.242 0.758 30 H 0.055 0.945 31 H 0.092 0.908 32 H 0.242 0.758 33 H 0.099 0.901 34 H 0.109 0.891 35 H 0.081 0.919 36 H 0.113 0.887 37 H 0.063 0.937 38 H 0.099 0.901 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.093 0.907 43 H 0.084 0.916 44 H 0.063 0.937 45 H 0.248 0.752 46 H 0.085 0.915 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.015 -23.282 -6.096 25.068 hybrid contribution 0.463 0.700 -0.045 0.841 sum 7.478 -22.581 -6.141 24.567 Atomic orbital electron populations 1.70175 1.07877 1.28541 1.48130 1.26073 0.95944 1.03121 0.93726 0.84996 0.78233 0.76212 0.78803 1.19329 1.20036 1.18391 1.23215 0.95238 0.92445 1.58784 0.90473 1.85371 1.10205 0.98636 1.96953 1.23353 1.03497 0.95631 1.05558 1.19671 0.86278 0.86006 0.74719 1.90581 1.16922 1.85726 1.50572 1.45455 1.09733 1.04356 1.74058 1.20453 0.95025 0.82139 0.92322 1.22501 0.93847 0.99802 0.85130 1.86376 1.43938 1.91709 1.16345 1.21780 0.95474 0.98170 0.99333 1.21620 0.97904 1.02829 0.92936 1.22262 0.92555 0.93348 0.99484 1.61632 1.11551 1.51780 1.01976 1.21858 0.95469 0.99885 0.88919 1.21410 0.99059 1.01733 0.92589 1.22120 0.93029 0.98322 0.86581 1.86423 1.44144 1.88138 1.21752 1.22283 0.95762 1.00274 0.89543 0.92000 0.88469 0.88491 0.75753 0.94471 0.90847 0.75831 0.90070 0.89087 0.91932 0.88748 0.93731 0.90113 0.92992 0.92398 0.93167 0.90655 0.91634 0.93718 0.75237 0.91506 0.92614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.89 13.22 21.65 0.29 -56.61 16 2 C 0.02 0.94 5.49 84.86 0.47 1.41 16 3 Si 1.00 44.83 29.55 68.60 2.03 46.86 16 4 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 5 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 6 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 7 C -0.55 -32.52 9.50 67.95 0.65 -31.87 16 8 H 0.08 4.31 7.80 -2.91 -0.02 4.29 16 9 S -0.14 -7.95 20.57 -56.49 -1.16 -9.11 16 10 C -0.13 -5.55 6.16 71.24 0.44 -5.11 16 11 C 0.55 21.17 7.26 87.66 0.64 21.81 16 12 O -0.56 -25.30 12.16 -3.01 -0.04 -25.34 16 13 N -0.68 -19.29 4.39 -422.70 -1.86 -21.15 16 14 C 0.19 4.33 0.45 3.65 0.00 4.33 16 15 C 0.07 1.57 5.69 71.98 0.41 1.98 16 16 O -0.58 -13.20 13.02 -148.98 -1.94 -15.14 16 17 C -0.11 -1.75 4.70 30.67 0.14 -1.60 16 18 C -0.12 -1.69 5.91 30.65 0.18 -1.51 16 19 C 0.05 0.84 5.29 86.33 0.46 1.30 16 20 N -0.54 -12.52 4.51 -896.34 -4.04 -16.56 16 21 C 0.07 1.45 4.96 86.30 0.43 1.88 16 22 C -0.11 -2.39 5.51 30.60 0.17 -2.22 16 23 C 0.08 1.44 7.05 71.98 0.51 1.95 16 24 O -0.60 -12.01 13.66 -148.98 -2.03 -14.05 16 25 C 0.05 1.24 3.96 86.33 0.34 1.58 16 26 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 27 H 0.10 3.91 8.14 -2.39 -0.02 3.89 16 28 H 0.10 3.96 8.14 -2.40 -0.02 3.94 16 29 H 0.41 9.86 7.60 -92.71 -0.70 9.15 16 30 H 0.04 1.15 6.43 -2.38 -0.02 1.13 16 31 H 0.07 1.27 8.14 -2.39 -0.02 1.26 16 32 H 0.39 6.01 9.12 -74.06 -0.68 5.34 16 33 H 0.08 1.32 7.91 -2.39 -0.02 1.30 16 34 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 35 H 0.06 1.08 7.13 -2.39 -0.02 1.07 16 36 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.08 1.32 6.21 -2.39 -0.01 1.30 16 39 H 0.05 0.91 8.12 -2.38 -0.02 0.89 16 40 H 0.06 1.51 7.99 -2.39 -0.02 1.49 16 41 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.07 1.50 6.43 -2.39 -0.02 1.48 16 43 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.40 4.11 9.12 -74.06 -0.68 3.44 16 46 H 0.07 2.22 5.94 -2.38 -0.01 2.20 16 47 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -80.75 383.87 -4.99 -85.73 By element: Atomic # 1 Polarization: 32.51 SS G_CDS: -1.06 Total: 31.45 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: 4.83 Total: -6.10 kcal Atomic # 7 Polarization: -88.70 SS G_CDS: -5.61 Total: -94.31 kcal Atomic # 8 Polarization: -50.51 SS G_CDS: -4.01 Total: -54.53 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Atomic # 16 Polarization: -7.95 SS G_CDS: -1.16 Total: -9.11 kcal Total: -80.75 -4.99 -85.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325817468.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.036 kcal (2) G-P(sol) polarization free energy of solvation -80.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds