Wall clock time and date at job start Sat Apr 11 2020 03:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86801 * 120.00151 * 2 1 4 4 H 1.48495 * 109.47173 * 240.00322 * 3 2 1 5 5 H 1.48501 * 109.47158 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47069 * 120.00040 * 3 2 1 7 7 C 1.38805 * 120.00103 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99856 * 179.97438 * 7 2 1 9 9 S 1.76200 * 119.99795 * 0.02562 * 7 2 1 10 10 C 1.80992 * 100.00051 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47202 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00281 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99995 * 179.97438 * 11 10 9 14 14 C 1.46498 * 120.00186 * 184.94430 * 13 11 10 15 15 C 1.52992 * 109.50429 * 57.65763 * 14 13 11 16 16 O 1.42896 * 109.47556 * 58.00753 * 15 14 13 17 17 C 1.53122 * 109.50773 * 177.73967 * 14 13 11 18 18 C 1.53124 * 109.16155 * 62.28145 * 17 14 13 19 19 C 1.53044 * 109.27626 * 57.65732 * 18 17 14 20 20 N 1.46850 * 109.52148 * 300.82280 * 19 18 17 21 21 C 1.46900 * 110.99729 * 185.83939 * 20 19 18 22 22 C 1.53000 * 109.47286 * 66.04263 * 21 20 19 23 23 C 1.52998 * 109.47668 * 180.02562 * 22 21 20 24 24 O 1.42891 * 109.47620 * 179.97438 * 23 22 21 25 25 C 1.46840 * 111.20035 * 61.74415 * 20 19 18 26 26 H 0.96996 * 120.00060 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.47319 * 60.00178 * 10 9 7 28 28 H 1.09000 * 109.47142 * 300.00073 * 10 9 7 29 29 H 0.96999 * 120.00263 * 4.94401 * 13 11 10 30 30 H 1.09003 * 109.47610 * 178.01371 * 15 14 13 31 31 H 1.09005 * 109.47501 * 298.00814 * 15 14 13 32 32 H 0.96701 * 114.00947 * 179.97438 * 16 15 14 33 33 H 1.08995 * 109.51813 * 302.38153 * 17 14 13 34 34 H 1.08995 * 109.57454 * 182.22056 * 17 14 13 35 35 H 1.09000 * 109.50417 * 297.71811 * 18 17 14 36 36 H 1.08994 * 109.50452 * 177.60066 * 18 17 14 37 37 H 1.09001 * 109.46051 * 180.80279 * 19 18 17 38 38 H 1.08998 * 109.45108 * 60.82778 * 19 18 17 39 39 H 1.09006 * 109.47200 * 306.04564 * 21 20 19 40 40 H 1.08993 * 109.47296 * 186.04586 * 21 20 19 41 41 H 1.08997 * 109.46992 * 59.99958 * 22 21 20 42 42 H 1.09007 * 109.47071 * 300.00273 * 22 21 20 43 43 H 1.08997 * 109.47064 * 59.99860 * 23 22 21 44 44 H 1.09007 * 109.46982 * 300.00187 * 23 22 21 45 45 H 0.96698 * 114.00152 * 179.97438 * 24 23 22 46 46 H 1.09000 * 109.46778 * 58.26892 * 25 20 19 47 47 H 1.08996 * 109.46155 * 178.24211 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2020 -0.0010 9 16 1.1293 -2.7280 -0.0019 10 6 2.5157 -3.8914 -0.0029 11 6 1.9872 -5.3027 -0.0036 12 8 0.7909 -5.5023 -0.0038 13 7 2.8440 -6.3432 -0.0049 14 6 2.3339 -7.7120 -0.1149 15 6 1.5148 -7.8502 -1.3996 16 8 2.3309 -7.5143 -2.5234 17 6 3.5081 -8.6941 -0.1491 18 6 4.2879 -8.5912 1.1647 19 6 3.3454 -8.8793 2.3355 20 7 2.2397 -7.9130 2.3247 21 6 1.3904 -8.0715 3.5128 22 6 2.1883 -7.6978 4.7636 23 6 1.3040 -7.8635 6.0011 24 8 2.0494 -7.5150 7.1694 25 6 1.4480 -8.0257 1.0931 26 1 -0.4850 0.8400 0.0004 27 1 3.1244 -3.7322 0.8872 28 1 3.1243 -3.7306 -0.8928 29 1 3.7984 -6.1856 0.0669 30 1 1.1649 -8.8778 -1.4988 31 1 0.6582 -7.1773 -1.3587 32 1 1.8757 -7.5803 -3.3741 33 1 4.1652 -8.4472 -0.9829 34 1 3.1314 -9.7097 -0.2705 35 1 4.6983 -7.5865 1.2666 36 1 5.1000 -9.3182 1.1638 37 1 3.8942 -8.7929 3.2733 38 1 2.9461 -9.8891 2.2401 39 1 1.0609 -9.1078 3.5882 40 1 0.5213 -7.4192 3.4278 41 1 2.5178 -6.6616 4.6882 42 1 3.0574 -8.3502 4.8486 43 1 0.9748 -8.8998 6.0764 44 1 0.4346 -7.2114 5.9164 45 1 1.5499 -7.5963 7.9934 46 1 1.0577 -9.0395 1.0037 47 1 0.6188 -7.3192 1.1285 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325817469.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:06:19 Heat of formation + Delta-G solvation = -136.173132 kcal Electronic energy + Delta-G solvation = -27586.523529 eV Core-core repulsion = 23702.346226 eV Total energy + Delta-G solvation = -3884.177303 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.50137 -38.26250 -37.25547 -36.59928 -34.83185 -32.83869 -32.36192 -31.41164 -30.87676 -28.31709 -26.06296 -25.83567 -25.40497 -23.14748 -22.40375 -20.93150 -20.57379 -19.01078 -17.81001 -17.57178 -17.30015 -16.50256 -16.05364 -15.93725 -15.70488 -15.00923 -14.74723 -14.71598 -14.39271 -14.26037 -14.04786 -13.95128 -13.37747 -13.22177 -13.11252 -12.94882 -12.71334 -12.53824 -12.35669 -11.95586 -11.83113 -11.59674 -11.28360 -11.20154 -11.03455 -10.98804 -10.97158 -10.70587 -10.64559 -10.45888 -10.14197 -10.02204 -9.74115 -8.99672 -8.98704 -8.62477 -8.36392 -8.14813 -6.40534 -6.15385 -3.84119 3.13657 3.27846 3.30256 3.31733 3.35958 3.50303 3.86011 4.14410 4.27160 4.28012 4.56136 4.62536 4.73932 4.82562 5.01180 5.06713 5.16271 5.19669 5.20340 5.20908 5.23750 5.29379 5.37506 5.40110 5.47125 5.48437 5.52995 5.63252 5.69517 5.81055 5.88953 5.91833 5.98529 6.05568 6.07531 6.12383 6.17140 6.29978 6.82787 6.96441 7.05646 7.39558 7.63254 7.66026 7.97520 8.41839 8.83269 9.30181 10.92035 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.009508 B = 0.003567 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2944.215356 B = 7847.499009 C = 9916.581044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.074 3.926 3 Si 0.917 3.083 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.534 4.534 8 H 0.071 0.929 9 S -0.060 6.060 10 C -0.152 4.152 11 C 0.546 3.454 12 O -0.528 6.528 13 N -0.705 5.705 14 C 0.194 3.806 15 C 0.062 3.938 16 O -0.565 6.565 17 C -0.120 4.120 18 C -0.118 4.118 19 C 0.050 3.950 20 N -0.525 5.525 21 C 0.062 3.938 22 C -0.117 4.117 23 C 0.077 3.923 24 O -0.575 6.575 25 C 0.046 3.954 26 H 0.268 0.732 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.397 0.603 30 H 0.044 0.956 31 H 0.075 0.925 32 H 0.377 0.623 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.078 0.922 38 H 0.030 0.970 39 H 0.031 0.969 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.067 0.933 43 H 0.041 0.959 44 H 0.049 0.951 45 H 0.379 0.621 46 H 0.035 0.965 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.563 -22.675 4.839 23.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.135 4.135 3 Si 0.743 3.257 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.200 1.200 7 C -0.682 4.682 8 H 0.089 0.911 9 S 0.167 5.833 10 C -0.302 4.302 11 C 0.333 3.667 12 O -0.404 6.404 13 N -0.358 5.358 14 C 0.106 3.894 15 C -0.018 4.018 16 O -0.370 6.370 17 C -0.158 4.158 18 C -0.156 4.156 19 C -0.077 4.077 20 N -0.249 5.249 21 C -0.066 4.066 22 C -0.155 4.155 23 C -0.001 4.001 24 O -0.380 6.380 25 C -0.083 4.083 26 H 0.078 0.922 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.231 0.769 30 H 0.062 0.938 31 H 0.093 0.907 32 H 0.224 0.776 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.048 0.952 39 H 0.049 0.951 40 H 0.099 0.901 41 H 0.100 0.900 42 H 0.086 0.914 43 H 0.060 0.940 44 H 0.067 0.933 45 H 0.225 0.775 46 H 0.053 0.947 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 4.520 -22.235 4.858 23.204 hybrid contribution 1.162 0.281 -0.015 1.195 sum 5.682 -21.954 4.843 23.189 Atomic orbital electron populations 1.70007 1.05927 1.27415 1.47145 1.24965 0.94990 0.98918 0.94630 0.86256 0.79263 0.81371 0.78804 1.19972 1.20868 1.19956 1.22853 0.94900 0.91847 1.58634 0.91087 1.85263 1.05197 0.96139 1.96685 1.23510 1.06333 0.95751 1.04643 1.20060 0.86378 0.86008 0.74289 1.90576 1.15557 1.85470 1.48803 1.45658 1.09867 1.04183 1.76072 1.20155 0.93745 0.83219 0.92254 1.22563 0.94315 0.99017 0.85855 1.86423 1.41535 1.92297 1.16698 1.21804 0.97026 0.98498 0.98453 1.21614 0.97560 1.02724 0.93723 1.22197 0.93196 0.92986 0.99360 1.61659 1.10993 1.50918 1.01370 1.21932 0.95976 0.99354 0.89324 1.21493 0.98524 1.03997 0.91444 1.22122 0.94159 0.98265 0.85593 1.86478 1.43197 1.91465 1.16838 1.22470 0.96834 1.00407 0.88601 0.92248 0.89508 0.89524 0.76873 0.93783 0.90723 0.77603 0.90173 0.91161 0.90800 0.91269 0.90408 0.95214 0.95072 0.90143 0.89988 0.91423 0.94047 0.93290 0.77468 0.94720 0.87681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.51 13.22 55.49 0.73 -25.78 16 2 C 0.07 2.14 5.49 -17.43 -0.10 2.05 16 3 Si 0.92 21.79 29.55 -169.99 -5.02 16.77 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.53 -15.53 9.50 30.94 0.29 -15.24 16 8 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 9 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 10 C -0.15 -3.20 6.16 36.01 0.22 -2.98 16 11 C 0.55 10.32 7.26 -10.98 -0.08 10.24 16 12 O -0.53 -11.37 12.12 5.56 0.07 -11.31 16 13 N -0.70 -10.15 4.53 -47.53 -0.22 -10.37 16 14 C 0.19 2.38 0.45 -131.74 -0.06 2.32 16 15 C 0.06 0.77 5.67 37.15 0.21 0.98 16 16 O -0.56 -6.96 12.95 -35.23 -0.46 -7.41 16 17 C -0.12 -1.16 4.68 -26.60 -0.12 -1.28 16 18 C -0.12 -1.05 5.91 -26.64 -0.16 -1.21 16 19 C 0.05 0.48 5.29 -3.83 -0.02 0.46 16 20 N -0.53 -6.15 4.51 -234.67 -1.06 -7.21 16 21 C 0.06 0.67 4.96 -3.82 -0.02 0.65 16 22 C -0.12 -1.24 5.52 -26.73 -0.15 -1.39 16 23 C 0.08 0.71 7.05 37.16 0.26 0.97 16 24 O -0.57 -5.81 13.66 -35.23 -0.48 -6.29 16 25 C 0.05 0.57 4.05 -3.83 -0.02 0.56 16 26 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 27 H 0.09 1.74 8.14 -51.91 -0.42 1.32 16 28 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 29 H 0.40 5.08 7.41 -40.82 -0.30 4.78 16 30 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 1.15 6.23 -51.93 -0.32 0.82 16 32 H 0.38 3.20 9.12 45.56 0.42 3.62 16 33 H 0.08 0.81 7.82 -51.93 -0.41 0.41 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.72 7.00 -51.93 -0.36 0.35 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.71 6.22 -51.93 -0.32 0.39 16 38 H 0.03 0.27 8.14 -51.93 -0.42 -0.16 16 39 H 0.03 0.29 8.12 -51.93 -0.42 -0.13 16 40 H 0.08 0.96 7.98 -51.93 -0.41 0.54 16 41 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 42 H 0.07 0.69 6.44 -51.93 -0.33 0.36 16 43 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 44 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.38 2.02 9.12 45.56 0.42 2.43 16 46 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.11 1.65 6.04 -51.93 -0.31 1.33 16 LS Contribution 383.45 15.07 5.78 5.78 Total: -1.00 -35.91 383.45 -8.74 -44.65 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -6.14 Total: 8.87 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: 0.27 Total: -3.87 kcal Atomic # 7 Polarization: -42.81 SS G_CDS: -0.54 Total: -43.35 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: -0.87 Total: -25.01 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.91 -8.74 -44.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325817469.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.520 kcal (2) G-P(sol) polarization free energy of solvation -35.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds