Wall clock time and date at job start Sat Apr 11 2020 03:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86801 * 120.00151 * 2 1 4 4 H 1.48495 * 109.47173 * 240.00322 * 3 2 1 5 5 H 1.48501 * 109.47158 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47069 * 120.00040 * 3 2 1 7 7 C 1.38805 * 120.00103 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99856 * 179.97438 * 7 2 1 9 9 S 1.76200 * 119.99795 * 0.02562 * 7 2 1 10 10 C 1.80992 * 100.00051 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47202 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00281 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99995 * 179.97438 * 11 10 9 14 14 C 1.46498 * 120.00186 * 184.94430 * 13 11 10 15 15 C 1.52992 * 109.50429 * 57.65763 * 14 13 11 16 16 O 1.42896 * 109.47556 * 58.00753 * 15 14 13 17 17 C 1.53122 * 109.50773 * 177.73967 * 14 13 11 18 18 C 1.53124 * 109.16155 * 62.28145 * 17 14 13 19 19 C 1.53044 * 109.27626 * 57.65732 * 18 17 14 20 20 N 1.46850 * 109.52148 * 300.82280 * 19 18 17 21 21 C 1.46900 * 110.99729 * 185.83939 * 20 19 18 22 22 C 1.53000 * 109.47286 * 66.04263 * 21 20 19 23 23 C 1.52998 * 109.47668 * 180.02562 * 22 21 20 24 24 O 1.42891 * 109.47620 * 179.97438 * 23 22 21 25 25 C 1.46840 * 111.20035 * 61.74415 * 20 19 18 26 26 H 0.96996 * 120.00060 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.47319 * 60.00178 * 10 9 7 28 28 H 1.09000 * 109.47142 * 300.00073 * 10 9 7 29 29 H 0.96999 * 120.00263 * 4.94401 * 13 11 10 30 30 H 1.09003 * 109.47610 * 178.01371 * 15 14 13 31 31 H 1.09005 * 109.47501 * 298.00814 * 15 14 13 32 32 H 0.96701 * 114.00947 * 179.97438 * 16 15 14 33 33 H 1.08995 * 109.51813 * 302.38153 * 17 14 13 34 34 H 1.08995 * 109.57454 * 182.22056 * 17 14 13 35 35 H 1.09000 * 109.50417 * 297.71811 * 18 17 14 36 36 H 1.08994 * 109.50452 * 177.60066 * 18 17 14 37 37 H 1.09001 * 109.46051 * 180.80279 * 19 18 17 38 38 H 1.08998 * 109.45108 * 60.82778 * 19 18 17 39 39 H 1.09006 * 109.47200 * 306.04564 * 21 20 19 40 40 H 1.08993 * 109.47296 * 186.04586 * 21 20 19 41 41 H 1.08997 * 109.46992 * 59.99958 * 22 21 20 42 42 H 1.09007 * 109.47071 * 300.00273 * 22 21 20 43 43 H 1.08997 * 109.47064 * 59.99860 * 23 22 21 44 44 H 1.09007 * 109.46982 * 300.00187 * 23 22 21 45 45 H 0.96698 * 114.00152 * 179.97438 * 24 23 22 46 46 H 1.09000 * 109.46778 * 58.26892 * 25 20 19 47 47 H 1.08996 * 109.46155 * 178.24211 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2020 -0.0010 9 16 1.1293 -2.7280 -0.0019 10 6 2.5157 -3.8914 -0.0029 11 6 1.9872 -5.3027 -0.0036 12 8 0.7909 -5.5023 -0.0038 13 7 2.8440 -6.3432 -0.0049 14 6 2.3339 -7.7120 -0.1149 15 6 1.5148 -7.8502 -1.3996 16 8 2.3309 -7.5143 -2.5234 17 6 3.5081 -8.6941 -0.1491 18 6 4.2879 -8.5912 1.1647 19 6 3.3454 -8.8793 2.3355 20 7 2.2397 -7.9130 2.3247 21 6 1.3904 -8.0715 3.5128 22 6 2.1883 -7.6978 4.7636 23 6 1.3040 -7.8635 6.0011 24 8 2.0494 -7.5150 7.1694 25 6 1.4480 -8.0257 1.0931 26 1 -0.4850 0.8400 0.0004 27 1 3.1244 -3.7322 0.8872 28 1 3.1243 -3.7306 -0.8928 29 1 3.7984 -6.1856 0.0669 30 1 1.1649 -8.8778 -1.4988 31 1 0.6582 -7.1773 -1.3587 32 1 1.8757 -7.5803 -3.3741 33 1 4.1652 -8.4472 -0.9829 34 1 3.1314 -9.7097 -0.2705 35 1 4.6983 -7.5865 1.2666 36 1 5.1000 -9.3182 1.1638 37 1 3.8942 -8.7929 3.2733 38 1 2.9461 -9.8891 2.2401 39 1 1.0609 -9.1078 3.5882 40 1 0.5213 -7.4192 3.4278 41 1 2.5178 -6.6616 4.6882 42 1 3.0574 -8.3502 4.8486 43 1 0.9748 -8.8998 6.0764 44 1 0.4346 -7.2114 5.9164 45 1 1.5499 -7.5963 7.9934 46 1 1.0577 -9.0395 1.0037 47 1 0.6188 -7.3192 1.1285 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325817469.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:06:19 Heat of formation + Delta-G solvation = -167.835192 kcal Electronic energy + Delta-G solvation = -27587.896499 eV Core-core repulsion = 23702.346226 eV Total energy + Delta-G solvation = -3885.550273 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.60148 -39.44196 -38.15381 -37.51069 -35.82643 -34.57708 -33.91554 -32.34857 -31.94262 -29.83174 -27.63442 -26.89665 -26.71395 -24.00068 -23.30714 -22.11328 -21.49476 -20.15370 -19.81356 -18.35911 -18.24515 -17.87373 -16.99241 -16.90431 -16.86941 -16.75796 -16.37463 -15.93700 -15.54969 -15.26457 -15.18919 -15.01195 -14.62334 -14.52339 -14.27323 -13.97265 -13.91752 -13.64669 -13.30775 -13.24306 -13.14676 -12.86817 -12.84542 -12.63481 -12.58354 -12.11358 -12.01561 -11.81006 -11.69846 -11.46617 -11.36622 -11.12338 -11.07091 -10.87762 -10.39477 -10.25287 -9.87970 -9.22271 -8.62530 -8.33592 -6.10141 1.28913 1.43508 1.47265 1.58739 1.79177 2.27801 2.36460 2.69295 3.00121 3.33587 3.36099 3.47949 3.69895 3.78442 3.92379 4.05798 4.09202 4.21955 4.25037 4.33063 4.33935 4.40651 4.43646 4.45940 4.50435 4.54409 4.60041 4.63373 4.67472 4.71243 4.80186 4.88931 5.00438 5.07160 5.14867 5.21641 5.28320 5.38110 5.42064 5.67232 6.08727 6.20401 6.21215 6.67773 6.84616 6.88178 7.07600 7.41006 8.75382 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.009508 B = 0.003567 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2944.215356 B = 7847.499009 C = 9916.581044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.016 3.984 3 Si 0.996 3.004 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.551 4.551 8 H 0.078 0.922 9 S -0.139 6.139 10 C -0.130 4.130 11 C 0.546 3.454 12 O -0.558 6.558 13 N -0.685 5.685 14 C 0.188 3.812 15 C 0.065 3.935 16 O -0.576 6.576 17 C -0.110 4.110 18 C -0.116 4.116 19 C 0.051 3.949 20 N -0.544 5.544 21 C 0.066 3.934 22 C -0.110 4.110 23 C 0.078 3.922 24 O -0.596 6.596 25 C 0.052 3.948 26 H 0.271 0.729 27 H 0.097 0.903 28 H 0.098 0.902 29 H 0.407 0.593 30 H 0.074 0.926 31 H 0.038 0.962 32 H 0.393 0.607 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.062 0.938 36 H 0.094 0.906 37 H 0.081 0.919 38 H 0.044 0.956 39 H 0.051 0.949 40 H 0.059 0.941 41 H 0.051 0.949 42 H 0.074 0.926 43 H 0.065 0.935 44 H 0.046 0.954 45 H 0.398 0.602 46 H 0.055 0.945 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.809 -24.373 4.997 26.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.189 4.189 3 Si 0.817 3.183 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.698 4.698 8 H 0.096 0.904 9 S 0.089 5.911 10 C -0.281 4.281 11 C 0.332 3.668 12 O -0.437 6.437 13 N -0.337 5.337 14 C 0.101 3.899 15 C -0.015 4.015 16 O -0.384 6.384 17 C -0.147 4.147 18 C -0.153 4.153 19 C -0.077 4.077 20 N -0.269 5.269 21 C -0.062 4.062 22 C -0.148 4.148 23 C -0.001 4.001 24 O -0.405 6.405 25 C -0.077 4.077 26 H 0.080 0.920 27 H 0.115 0.885 28 H 0.116 0.884 29 H 0.243 0.757 30 H 0.092 0.908 31 H 0.056 0.944 32 H 0.242 0.758 33 H 0.098 0.902 34 H 0.108 0.892 35 H 0.081 0.919 36 H 0.113 0.887 37 H 0.100 0.900 38 H 0.062 0.938 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.093 0.907 43 H 0.083 0.917 44 H 0.064 0.936 45 H 0.248 0.752 46 H 0.073 0.927 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.790 -23.975 5.018 25.418 hybrid contribution 0.473 0.688 -0.055 0.837 sum 7.264 -23.287 4.963 24.893 Atomic orbital electron populations 1.70165 1.07884 1.28626 1.48016 1.26079 0.95948 1.03135 0.93702 0.85047 0.77891 0.75886 0.79446 1.18708 1.20130 1.18816 1.23191 0.95263 0.92447 1.58946 0.90423 1.85373 1.10177 0.98629 1.96966 1.23361 1.03535 0.95595 1.05631 1.19703 0.86298 0.86034 0.74788 1.90585 1.16899 1.85722 1.50519 1.45484 1.09778 1.04363 1.74058 1.20441 0.95073 0.82189 0.92212 1.22485 0.93136 0.99742 0.86100 1.86374 1.41968 1.92467 1.17556 1.21761 0.95686 0.98367 0.98916 1.21630 0.97906 1.02929 0.92861 1.22264 0.92439 0.93044 0.99913 1.61635 1.11636 1.52481 1.01149 1.21863 0.95226 0.99945 0.89129 1.21410 0.99043 1.02131 0.92217 1.22117 0.93491 0.99544 0.84898 1.86421 1.44348 1.91687 1.18026 1.22290 0.95925 1.00327 0.89184 0.91984 0.88459 0.88369 0.75721 0.90814 0.94352 0.75800 0.90155 0.89165 0.91890 0.88733 0.90030 0.93767 0.93051 0.92278 0.93054 0.90725 0.91725 0.93616 0.75221 0.92742 0.91520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.81 13.22 21.65 0.29 -56.53 16 2 C 0.02 0.94 5.49 84.86 0.47 1.41 16 3 Si 1.00 44.70 29.55 68.60 2.03 46.73 16 4 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 5 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 6 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 7 C -0.55 -32.55 9.50 67.96 0.65 -31.91 16 8 H 0.08 4.32 7.80 -2.91 -0.02 4.29 16 9 S -0.14 -7.92 20.57 -56.49 -1.16 -9.08 16 10 C -0.13 -5.57 6.16 71.24 0.44 -5.13 16 11 C 0.55 21.07 7.26 87.66 0.64 21.71 16 12 O -0.56 -25.21 12.12 -3.04 -0.04 -25.25 16 13 N -0.68 -19.32 4.53 -422.68 -1.92 -21.24 16 14 C 0.19 4.35 0.45 3.66 0.00 4.36 16 15 C 0.06 1.55 5.67 71.98 0.41 1.96 16 16 O -0.58 -13.37 12.95 -148.98 -1.93 -15.30 16 17 C -0.11 -1.77 4.68 30.68 0.14 -1.63 16 18 C -0.12 -1.68 5.91 30.65 0.18 -1.50 16 19 C 0.05 0.82 5.29 86.33 0.46 1.28 16 20 N -0.54 -12.21 4.51 -896.35 -4.04 -16.25 16 21 C 0.07 1.39 4.96 86.30 0.43 1.82 16 22 C -0.11 -2.29 5.52 30.59 0.17 -2.12 16 23 C 0.08 1.37 7.05 71.98 0.51 1.88 16 24 O -0.60 -11.50 13.66 -148.98 -2.03 -13.53 16 25 C 0.05 1.26 4.05 86.33 0.35 1.61 16 26 H 0.27 15.71 8.31 -92.71 -0.77 14.93 16 27 H 0.10 3.93 8.14 -2.39 -0.02 3.91 16 28 H 0.10 3.95 8.14 -2.40 -0.02 3.93 16 29 H 0.41 9.87 7.41 -92.71 -0.69 9.18 16 30 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.04 1.21 6.23 -2.38 -0.01 1.20 16 32 H 0.39 6.19 9.12 -74.06 -0.68 5.51 16 33 H 0.08 1.36 7.82 -2.39 -0.02 1.34 16 34 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.06 1.07 7.00 -2.39 -0.02 1.05 16 36 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.08 1.29 6.22 -2.39 -0.01 1.27 16 38 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.05 0.87 8.12 -2.38 -0.02 0.85 16 40 H 0.06 1.47 7.98 -2.39 -0.02 1.45 16 41 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.07 1.43 6.44 -2.38 -0.02 1.41 16 43 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 45 H 0.40 3.78 9.12 -74.06 -0.68 3.10 16 46 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.07 2.18 6.04 -2.39 -0.01 2.16 16 Total: -1.00 -80.42 383.45 -5.01 -85.43 By element: Atomic # 1 Polarization: 32.33 SS G_CDS: -1.04 Total: 31.29 kcal Atomic # 6 Polarization: -11.10 SS G_CDS: 4.83 Total: -6.27 kcal Atomic # 7 Polarization: -88.35 SS G_CDS: -5.67 Total: -94.02 kcal Atomic # 8 Polarization: -50.08 SS G_CDS: -4.00 Total: -54.08 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Atomic # 16 Polarization: -7.92 SS G_CDS: -1.16 Total: -9.08 kcal Total: -80.42 -5.01 -85.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325817469.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.404 kcal (2) G-P(sol) polarization free energy of solvation -80.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds