Wall clock time and date at job start Sat Apr 11 2020 03:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00070 * 2 1 4 4 H 1.48502 * 109.47217 * 240.00044 * 3 2 1 5 5 H 1.48497 * 109.47313 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46798 * 120.00221 * 3 2 1 7 7 C 1.37881 * 119.99910 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99552 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00259 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47448 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.47276 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.47574 * 304.99931 * 11 10 9 13 13 N 1.46901 * 109.47107 * 65.00110 * 11 10 9 14 14 C 1.50706 * 109.47156 * 184.99954 * 11 10 9 15 15 O 1.21289 * 120.00110 * 260.00108 * 14 11 10 16 16 N 1.34770 * 119.99854 * 80.00388 * 14 11 10 17 17 C 1.40092 * 120.00298 * 174.87413 * 16 14 11 18 18 C 1.38887 * 120.15367 * 326.83560 * 17 16 14 19 19 C 1.37778 * 120.14077 * 179.72328 * 18 17 16 20 20 C 1.39635 * 120.37954 * 0.55227 * 19 18 17 21 21 C 1.38558 * 119.16709 * 359.72246 * 20 19 18 22 22 C 1.38144 * 120.52887 * 0.02562 * 21 20 19 23 23 C 1.51226 * 108.57616 * 180.02562 * 21 20 19 24 24 C 1.53725 * 104.61705 * 0.02562 * 23 21 20 25 25 N 1.40059 * 129.25728 * 179.75113 * 20 19 18 26 26 C 1.34777 * 124.99033 * 359.93760 * 25 20 19 27 27 N 1.34774 * 119.99728 * 185.09352 * 26 25 20 28 28 O 1.21583 * 120.00120 * 5.09579 * 26 25 20 29 29 H 0.97000 * 119.99924 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.47392 * 300.00578 * 9 7 2 31 31 H 1.09008 * 109.46734 * 60.00039 * 9 7 2 32 32 H 1.09007 * 109.47216 * 300.00510 * 10 9 7 33 33 H 1.09008 * 109.47196 * 60.00230 * 10 9 7 34 34 H 1.00900 * 110.99827 * 296.04591 * 13 11 10 35 35 H 1.00906 * 111.00179 * 60.00257 * 13 11 10 36 36 H 0.96999 * 119.99957 * 354.86877 * 16 14 11 37 37 H 1.07995 * 119.93116 * 359.97438 * 18 17 16 38 38 H 1.07999 * 119.80328 * 180.28146 * 19 18 17 39 39 H 1.08003 * 119.94507 * 179.97438 * 22 21 20 40 40 H 1.08996 * 110.40457 * 118.78706 * 23 21 20 41 41 H 1.09001 * 110.40563 * 241.21706 * 23 21 20 42 42 H 1.09007 * 110.29679 * 118.93478 * 24 23 21 43 43 H 1.09006 * 110.29781 * 241.06418 * 24 23 21 44 44 H 0.97002 * 120.00187 * 354.99388 * 27 26 25 45 45 H 0.97001 * 120.00053 * 174.99093 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4803 -4.9870 -0.0012 12 1 0.7878 -5.0073 0.8404 13 7 0.7290 -5.1181 -1.2567 14 6 2.4549 -6.1299 0.1226 15 8 2.7871 -6.7532 -0.8634 16 7 2.9572 -6.4593 1.3290 17 6 3.7782 -7.5867 1.4619 18 6 3.5656 -8.7026 0.6629 19 6 4.3767 -9.8091 0.7898 20 6 5.4102 -9.8230 1.7286 21 6 5.6130 -8.7084 2.5263 22 6 4.8040 -7.5962 2.3968 23 6 6.7819 -8.9807 3.4463 24 6 7.2389 -10.4026 3.0826 25 7 6.3328 -10.8369 2.0161 26 6 6.3801 -12.0357 1.4020 27 7 7.2451 -12.9773 1.8279 28 8 5.6424 -12.2677 0.4638 29 1 -0.4850 0.8400 0.0004 30 1 0.6247 -2.5571 0.8896 31 1 0.6241 -2.5567 -0.8904 32 1 2.8720 -3.6043 -0.8905 33 1 2.8719 -3.6044 0.8895 34 1 0.0242 -4.4000 -1.3330 35 1 1.3491 -5.1022 -2.0526 36 1 2.7505 -5.9158 2.1054 37 1 2.7653 -8.7015 -0.0623 38 1 4.2093 -10.6721 0.1625 39 1 4.9702 -6.7326 3.0237 40 1 7.5840 -8.2656 3.2635 41 1 6.4636 -8.9381 4.4880 42 1 8.2679 -10.3888 2.7230 43 1 7.1483 -11.0615 3.9463 44 1 7.8834 -12.7685 2.5279 45 1 7.2295 -13.8638 1.4346 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326040141.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:06:21 Heat of formation + Delta-G solvation = -66.309266 kcal Electronic energy + Delta-G solvation = -27482.353176 eV Core-core repulsion = 23498.054197 eV Total energy + Delta-G solvation = -3984.298979 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.29824 -41.36726 -39.80026 -37.86407 -36.95087 -35.47101 -34.84120 -34.41839 -33.26155 -31.68613 -30.24398 -29.91035 -28.04501 -25.89253 -24.66669 -24.10295 -23.11756 -22.00701 -21.40652 -21.00200 -19.42538 -18.94678 -18.46375 -18.20001 -17.66252 -17.32859 -16.95891 -16.57371 -16.36661 -16.09561 -15.81626 -15.50977 -15.42349 -15.02752 -14.94613 -14.68846 -14.64824 -14.05185 -13.90515 -13.80030 -13.62859 -13.45604 -13.05014 -12.92763 -12.87594 -12.67960 -12.53442 -12.23979 -11.86951 -11.76948 -11.66656 -11.42572 -11.30148 -10.86361 -10.80665 -10.54107 -10.37399 -9.79023 -9.66595 -8.46764 -8.19798 -6.29973 0.16384 0.34213 1.41225 1.42804 1.48195 1.50341 1.52347 1.94515 2.02030 2.41306 2.79320 3.10032 3.13894 3.58484 3.60860 3.65866 3.72747 4.04520 4.11626 4.18368 4.23099 4.23727 4.31466 4.41613 4.59509 4.66619 4.72587 4.83832 4.87889 5.05943 5.09924 5.12737 5.22328 5.29557 5.43676 5.48216 5.48810 5.67257 5.82285 5.85499 5.87078 6.04000 6.07233 6.22642 6.43192 6.46452 6.72607 6.85423 7.12594 7.38943 7.42423 8.90588 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.022886 B = 0.002092 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.165222 B =13384.060455 C =14258.243761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.004 3.996 3 Si 0.959 3.041 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.544 4.544 8 H 0.056 0.944 9 C 0.029 3.971 10 C -0.122 4.122 11 C 0.085 3.915 12 H 0.116 0.884 13 N -0.832 5.832 14 C 0.526 3.474 15 O -0.551 6.551 16 N -0.658 5.658 17 C 0.118 3.882 18 C -0.112 4.112 19 C -0.133 4.133 20 C 0.128 3.872 21 C -0.114 4.114 22 C -0.097 4.097 23 C -0.076 4.076 24 C 0.091 3.909 25 N -0.569 5.569 26 C 0.705 3.295 27 N -0.833 5.833 28 O -0.627 6.627 29 H 0.263 0.737 30 H 0.005 0.995 31 H 0.002 0.998 32 H 0.044 0.956 33 H 0.072 0.928 34 H 0.355 0.645 35 H 0.344 0.656 36 H 0.427 0.573 37 H 0.114 0.886 38 H 0.116 0.884 39 H 0.163 0.837 40 H 0.112 0.888 41 H 0.119 0.881 42 H 0.106 0.894 43 H 0.112 0.888 44 H 0.417 0.583 45 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.936 -22.612 14.189 32.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.194 4.194 3 Si 0.784 3.216 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.190 1.190 7 C -0.582 4.582 8 H 0.074 0.926 9 C -0.008 4.008 10 C -0.162 4.162 11 C -0.030 4.030 12 H 0.134 0.866 13 N -0.363 5.363 14 C 0.314 3.686 15 O -0.427 6.427 16 N -0.305 5.305 17 C 0.024 3.976 18 C -0.133 4.133 19 C -0.154 4.154 20 C 0.032 3.968 21 C -0.118 4.118 22 C -0.117 4.117 23 C -0.113 4.113 24 C -0.029 4.029 25 N -0.296 5.296 26 C 0.406 3.594 27 N -0.403 5.403 28 O -0.507 6.507 29 H 0.072 0.928 30 H 0.023 0.977 31 H 0.020 0.980 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.170 0.830 35 H 0.157 0.843 36 H 0.266 0.734 37 H 0.132 0.868 38 H 0.134 0.866 39 H 0.180 0.820 40 H 0.130 0.870 41 H 0.138 0.862 42 H 0.124 0.876 43 H 0.130 0.870 44 H 0.249 0.751 45 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 17.296 -23.798 13.163 32.229 hybrid contribution 0.304 1.776 -0.436 1.853 sum 17.601 -22.022 12.727 30.931 Atomic orbital electron populations 1.70053 1.07470 1.27784 1.51301 1.25871 0.95738 1.02980 0.94828 0.85599 0.78353 0.78656 0.79029 1.19786 1.20977 1.19046 1.21593 0.93384 0.92407 1.50863 0.92606 1.18972 0.94032 0.91916 0.95851 1.22160 0.98835 0.93445 1.01729 1.21403 0.94512 0.90798 0.96296 0.86578 1.58750 1.18460 1.55815 1.03307 1.20995 0.80680 0.84409 0.82516 1.90660 1.59658 1.54199 1.38182 1.43368 1.48737 1.27201 1.11217 1.17671 0.93904 0.86786 0.99284 1.20792 1.00276 0.91831 1.00366 1.20647 0.96066 0.98946 0.99758 1.18270 0.92144 0.89286 0.97099 1.20092 0.99865 0.92345 0.99508 1.20315 0.92575 0.99026 0.99828 1.21225 0.94656 0.95654 0.99789 1.22584 0.93991 0.96717 0.89583 1.45047 1.32999 1.12595 1.38965 1.15925 0.81632 0.80361 0.81515 1.42700 1.38499 1.14300 1.44787 1.90953 1.47591 1.80516 1.31627 0.92780 0.97674 0.98012 0.93745 0.90966 0.82969 0.84293 0.73399 0.86791 0.86559 0.81987 0.86958 0.86242 0.87637 0.86986 0.75077 0.74031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.86 13.29 21.45 0.28 -53.58 16 2 C 0.00 0.24 5.46 84.66 0.46 0.70 16 3 Si 0.96 42.89 29.54 68.60 2.03 44.92 16 4 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 7 C -0.54 -29.40 9.11 25.60 0.23 -29.17 16 8 H 0.06 2.93 7.74 -2.91 -0.02 2.90 16 9 C 0.03 1.41 4.74 29.84 0.14 1.56 16 10 C -0.12 -4.61 4.78 30.59 0.15 -4.46 16 11 C 0.09 2.80 3.21 44.17 0.14 2.95 16 12 H 0.12 3.46 8.14 -2.39 -0.02 3.44 16 13 N -0.83 -28.78 8.94 -171.80 -1.54 -30.32 16 14 C 0.53 17.35 6.82 87.66 0.60 17.95 16 15 O -0.55 -22.08 13.93 -3.06 -0.04 -22.12 16 16 N -0.66 -17.01 5.35 -303.42 -1.62 -18.63 16 17 C 0.12 3.16 6.29 38.11 0.24 3.40 16 18 C -0.11 -3.56 8.64 22.32 0.19 -3.37 16 19 C -0.13 -4.10 9.45 22.50 0.21 -3.89 16 20 C 0.13 3.10 6.63 38.24 0.25 3.35 16 21 C -0.11 -2.04 6.22 -19.64 -0.12 -2.16 16 22 C -0.10 -1.89 9.95 22.38 0.22 -1.67 16 23 C -0.08 -0.53 6.93 30.26 0.21 -0.32 16 24 C 0.09 0.53 6.34 86.62 0.55 1.08 16 25 N -0.57 -10.11 3.13 -646.12 -2.03 -12.13 16 26 C 0.71 14.53 8.69 179.06 1.56 16.09 16 27 N -0.83 -7.08 8.83 -184.75 -1.63 -8.71 16 28 O -0.63 -19.89 15.37 -3.98 -0.06 -19.95 16 29 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 30 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.00 0.08 6.87 -2.38 -0.02 0.06 16 32 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 33 H 0.07 2.49 8.14 -2.38 -0.02 2.47 16 34 H 0.35 12.35 7.55 -89.69 -0.68 11.68 16 35 H 0.34 12.25 8.58 -89.69 -0.77 11.48 16 36 H 0.43 8.15 8.82 -92.71 -0.82 7.34 16 37 H 0.11 4.17 6.40 -2.91 -0.02 4.15 16 38 H 0.12 4.10 6.29 -2.91 -0.02 4.08 16 39 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 40 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 41 H 0.12 0.29 8.14 -2.39 -0.02 0.27 16 42 H 0.11 0.14 8.14 -2.38 -0.02 0.12 16 43 H 0.11 -0.01 8.12 -2.38 -0.02 -0.02 16 44 H 0.42 0.26 7.77 -92.71 -0.72 -0.46 16 45 H 0.43 2.76 8.93 -92.71 -0.83 1.93 16 Total: -1.00 -82.18 373.40 -2.29 -84.47 By element: Atomic # 1 Polarization: 36.74 SS G_CDS: -2.72 Total: 34.02 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: 5.04 Total: 2.03 kcal Atomic # 7 Polarization: -116.84 SS G_CDS: -6.53 Total: -123.37 kcal Atomic # 8 Polarization: -41.96 SS G_CDS: -0.10 Total: -42.06 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -82.18 -2.29 -84.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326040141.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.158 kcal (2) G-P(sol) polarization free energy of solvation -82.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds