Wall clock time and date at job start Sat Apr 11 2020 03:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00080 * 2 1 4 4 H 1.48508 * 109.46863 * 240.00030 * 3 2 1 5 5 H 1.48502 * 109.47021 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47312 * 120.00005 * 3 2 1 7 7 C 1.37880 * 119.99954 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00218 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99538 * 359.97438 * 7 2 1 10 10 C 1.53008 * 109.46650 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46912 * 180.02562 * 10 9 7 12 12 H 1.08998 * 109.47448 * 54.99826 * 11 10 9 13 13 N 1.46901 * 109.46927 * 294.99841 * 11 10 9 14 14 C 1.50697 * 109.47178 * 175.00253 * 11 10 9 15 15 O 1.21289 * 120.00335 * 99.99340 * 14 11 10 16 16 N 1.34773 * 119.99839 * 279.99639 * 14 11 10 17 17 C 1.40095 * 120.00496 * 174.65427 * 16 14 11 18 18 C 1.38885 * 120.15669 * 325.24974 * 17 16 14 19 19 C 1.37769 * 120.14627 * 179.97438 * 18 17 16 20 20 C 1.39638 * 120.37570 * 359.97438 * 19 18 17 21 21 C 1.38554 * 119.17061 * 0.02562 * 20 19 18 22 22 C 1.38141 * 120.52912 * 0.02562 * 21 20 19 23 23 C 1.51227 * 108.58009 * 180.02562 * 21 20 19 24 24 C 1.53730 * 104.61168 * 0.02562 * 23 21 20 25 25 N 1.40053 * 129.25476 * 180.02562 * 20 19 18 26 26 C 1.34772 * 124.99230 * 359.94882 * 25 20 19 27 27 N 1.34786 * 119.99991 * 185.10148 * 26 25 20 28 28 O 1.21586 * 120.00172 * 5.09959 * 26 25 20 29 29 H 0.97000 * 119.99878 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.47224 * 60.00392 * 9 7 2 31 31 H 1.08996 * 109.47639 * 299.99544 * 9 7 2 32 32 H 1.09001 * 109.47010 * 60.00233 * 10 9 7 33 33 H 1.09000 * 109.47155 * 299.99490 * 10 9 7 34 34 H 1.00909 * 111.00108 * 300.00210 * 13 11 10 35 35 H 1.00896 * 111.00457 * 63.95600 * 13 11 10 36 36 H 0.97002 * 120.00002 * 354.65800 * 16 14 11 37 37 H 1.08000 * 119.92404 * 359.70020 * 18 17 16 38 38 H 1.07999 * 119.81070 * 179.97438 * 19 18 17 39 39 H 1.08001 * 119.95093 * 179.97438 * 22 21 20 40 40 H 1.08991 * 110.40782 * 118.78546 * 23 21 20 41 41 H 1.09000 * 110.40587 * 241.22034 * 23 21 20 42 42 H 1.09004 * 110.29106 * 118.93531 * 24 23 21 43 43 H 1.09004 * 110.29333 * 241.05781 * 24 23 21 44 44 H 0.97000 * 119.99546 * 5.00625 * 27 26 25 45 45 H 0.96993 * 119.99959 * 185.00704 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0017 10 6 2.2452 -3.6621 0.0027 11 6 1.4802 -4.9871 0.0033 12 1 0.7883 -5.0076 -0.8387 13 7 0.7280 -5.1177 1.2584 14 6 2.4547 -6.1300 -0.1195 15 8 2.7863 -6.7529 0.8670 16 7 2.9580 -6.4598 -1.3254 17 6 3.9472 -7.4468 -1.4256 18 6 4.9011 -7.5826 -0.4254 19 6 5.8735 -8.5536 -0.5239 20 6 5.9084 -9.4085 -1.6274 21 6 4.9536 -9.2674 -2.6215 22 6 3.9786 -8.2936 -2.5249 23 6 5.2137 -10.3053 -3.6902 24 6 6.4474 -11.0750 -3.1913 25 7 6.8016 -10.4482 -1.9151 26 6 7.8348 -10.8182 -1.1328 27 7 8.6943 -11.7665 -1.5555 28 8 7.9916 -10.2965 -0.0458 29 1 -0.4850 0.8401 -0.0004 30 1 0.6240 -2.5575 -0.8880 31 1 0.6247 -2.5563 0.8919 32 1 2.8718 -3.6036 0.8927 33 1 2.8718 -3.6052 -0.8873 34 1 1.3476 -5.1015 2.0546 35 1 0.0233 -4.3997 1.3340 36 1 2.6353 -6.0138 -2.1241 37 1 4.8833 -6.9227 0.4293 38 1 6.6129 -8.6542 0.2568 39 1 3.2391 -8.1916 -3.3054 40 1 4.3599 -10.9763 -3.7841 41 1 5.4262 -9.8233 -4.6445 42 1 6.2021 -12.1265 -3.0421 43 1 7.2682 -10.9746 -3.9015 44 1 8.6127 -12.1307 -2.4508 45 1 9.3944 -12.0847 -0.9643 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326040142.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:06:24 Heat of formation + Delta-G solvation = -37.918005 kcal Electronic energy + Delta-G solvation = -27515.162135 eV Core-core repulsion = 23532.094293 eV Total energy + Delta-G solvation = -3983.067842 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.49158 -40.20431 -38.86610 -36.85737 -35.45597 -34.50573 -33.60889 -32.85890 -32.51504 -29.92251 -29.39369 -29.01075 -26.49577 -24.33023 -23.93459 -23.12772 -21.91949 -20.74518 -20.46538 -19.75981 -18.66571 -17.56108 -17.54302 -16.83251 -16.72802 -16.25335 -16.18949 -15.47145 -14.83402 -14.75548 -14.58180 -14.43053 -14.24409 -14.10096 -13.83981 -13.32370 -13.13734 -13.03687 -12.87818 -12.71453 -12.51992 -12.38297 -12.18854 -11.74102 -11.34283 -11.11560 -10.94415 -10.84426 -10.71600 -10.50076 -10.19044 -10.01041 -9.96254 -9.47279 -9.32113 -9.24162 -8.87581 -8.44581 -8.23385 -7.56084 -6.09253 -4.12440 1.15748 1.28619 2.17558 2.65872 2.89942 3.11318 3.28644 3.33409 3.36113 3.62336 3.73460 4.07229 4.24619 4.39011 4.52927 4.79025 4.88172 4.90223 5.08714 5.14143 5.22751 5.26870 5.36645 5.37521 5.41745 5.52121 5.64622 5.72546 5.86609 6.02497 6.24332 6.28968 6.36794 6.41601 6.48554 6.51562 6.62110 6.84504 7.02279 7.32737 7.36501 7.49482 7.56869 7.62599 7.86738 7.88171 8.10101 8.29352 8.33674 8.93198 9.52501 11.01524 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019780 B = 0.002106 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.242388 B =13294.481662 C =13575.202665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.525 4.525 8 H 0.054 0.946 9 C 0.025 3.975 10 C -0.138 4.138 11 C 0.077 3.923 12 H 0.099 0.901 13 N -0.831 5.831 14 C 0.525 3.475 15 O -0.516 6.516 16 N -0.676 5.676 17 C 0.139 3.861 18 C -0.091 4.091 19 C -0.109 4.109 20 C 0.140 3.860 21 C -0.123 4.123 22 C -0.107 4.107 23 C -0.080 4.080 24 C 0.100 3.900 25 N -0.567 5.567 26 C 0.716 3.284 27 N -0.861 5.861 28 O -0.570 6.570 29 H 0.262 0.738 30 H 0.019 0.981 31 H 0.018 0.982 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.346 0.654 35 H 0.356 0.644 36 H 0.412 0.588 37 H 0.140 0.860 38 H 0.142 0.858 39 H 0.130 0.870 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.398 0.602 45 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.252 -25.016 -11.485 30.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.563 4.563 8 H 0.073 0.927 9 C -0.012 4.012 10 C -0.178 4.178 11 C -0.038 4.038 12 H 0.117 0.883 13 N -0.363 5.363 14 C 0.313 3.687 15 O -0.390 6.390 16 N -0.322 5.322 17 C 0.044 3.956 18 C -0.111 4.111 19 C -0.130 4.130 20 C 0.045 3.955 21 C -0.127 4.127 22 C -0.128 4.128 23 C -0.118 4.118 24 C -0.023 4.023 25 N -0.295 5.295 26 C 0.417 3.583 27 N -0.429 5.429 28 O -0.446 6.446 29 H 0.072 0.928 30 H 0.037 0.963 31 H 0.036 0.964 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.160 0.840 35 H 0.172 0.828 36 H 0.248 0.752 37 H 0.157 0.843 38 H 0.160 0.840 39 H 0.147 0.853 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.099 0.901 43 H 0.098 0.902 44 H 0.226 0.774 45 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 12.157 -25.659 -10.261 30.190 hybrid contribution 0.981 1.743 -0.521 2.067 sum 13.138 -23.916 -10.781 29.339 Atomic orbital electron populations 1.69938 1.06001 1.26912 1.50325 1.25013 0.94886 0.99315 0.95108 0.86636 0.79584 0.82982 0.78690 1.20217 1.21225 1.20204 1.21138 0.93003 0.90871 1.51272 0.92741 1.19100 0.93675 0.91036 0.97407 1.22408 0.99951 0.93760 1.01701 1.21465 0.94583 0.91850 0.95914 0.88315 1.58741 1.18467 1.55989 1.03101 1.21123 0.81135 0.84306 0.82175 1.90669 1.59454 1.52016 1.36825 1.43599 1.39278 1.38664 1.10646 1.17538 0.90276 0.91639 0.96153 1.20957 0.92124 0.98700 0.99359 1.20804 1.00037 0.94790 0.97352 1.18033 0.90927 0.90520 0.96047 1.19560 0.97132 0.99237 0.96763 1.19979 0.99181 0.94489 0.99147 1.21017 0.97151 0.95824 0.97767 1.22122 0.98142 0.97818 0.84180 1.44875 1.28133 1.34017 1.22444 1.15590 0.79147 0.80354 0.83234 1.42950 1.35623 1.44292 1.20055 1.90985 1.75200 1.57459 1.20922 0.92816 0.96271 0.96354 0.92518 0.92379 0.84024 0.82849 0.75216 0.84271 0.84015 0.85256 0.88995 0.88967 0.90091 0.90223 0.77398 0.74896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.85 13.29 55.43 0.74 -25.11 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.52 -14.28 9.11 -34.44 -0.31 -14.59 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.02 0.59 4.74 -27.88 -0.13 0.46 16 10 C -0.14 -2.65 4.78 -26.73 -0.13 -2.78 16 11 C 0.08 1.27 3.21 -68.87 -0.22 1.05 16 12 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 13 N -0.83 -14.06 8.94 -5.65 -0.05 -14.11 16 14 C 0.52 8.57 6.81 -10.99 -0.07 8.49 16 15 O -0.52 -9.95 14.05 5.55 0.08 -9.87 16 16 N -0.68 -8.94 5.35 -9.84 -0.05 -8.99 16 17 C 0.14 1.88 6.26 -83.63 -0.52 1.36 16 18 C -0.09 -1.37 8.63 -39.51 -0.34 -1.71 16 19 C -0.11 -1.58 9.45 -39.23 -0.37 -1.95 16 20 C 0.14 1.73 6.63 -83.46 -0.55 1.18 16 21 C -0.12 -1.25 6.22 -104.28 -0.65 -1.90 16 22 C -0.11 -1.15 9.96 -39.41 -0.39 -1.55 16 23 C -0.08 -0.46 6.93 -27.25 -0.19 -0.65 16 24 C 0.10 0.51 6.39 -3.65 -0.02 0.48 16 25 N -0.57 -5.56 3.13 -118.19 -0.37 -5.93 16 26 C 0.72 7.69 8.69 -86.91 -0.76 6.93 16 27 N -0.86 -4.65 8.81 27.64 0.24 -4.40 16 28 O -0.57 -8.69 15.37 5.29 0.08 -8.61 16 29 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.02 0.45 6.87 -51.93 -0.36 0.10 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.35 5.96 8.58 -39.29 -0.34 5.62 16 35 H 0.36 6.02 7.55 -39.29 -0.30 5.72 16 36 H 0.41 4.26 8.82 -40.82 -0.36 3.90 16 37 H 0.14 2.32 6.54 -52.49 -0.34 1.97 16 38 H 0.14 2.23 6.29 -52.49 -0.33 1.90 16 39 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 40 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 43 H 0.08 0.22 8.04 -51.93 -0.42 -0.20 16 44 H 0.40 0.86 7.74 -40.82 -0.32 0.54 16 45 H 0.42 1.76 8.93 -40.82 -0.36 1.39 16 LS Contribution 373.53 15.07 5.63 5.63 Total: -1.00 -36.03 373.53 -9.54 -45.57 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: -6.05 Total: 13.25 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: -4.76 Total: -3.65 kcal Atomic # 7 Polarization: -59.05 SS G_CDS: 0.51 Total: -58.55 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: 0.16 Total: -18.48 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.03 -9.54 -45.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326040142.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.652 kcal (2) G-P(sol) polarization free energy of solvation -36.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds