Wall clock time and date at job start Sat Apr 11 2020 03:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00080 * 2 1 4 4 H 1.48508 * 109.46863 * 240.00030 * 3 2 1 5 5 H 1.48502 * 109.47021 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47312 * 120.00005 * 3 2 1 7 7 C 1.37880 * 119.99954 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00218 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99538 * 359.97438 * 7 2 1 10 10 C 1.53008 * 109.46650 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46912 * 180.02562 * 10 9 7 12 12 H 1.08998 * 109.47448 * 54.99826 * 11 10 9 13 13 N 1.46901 * 109.46927 * 294.99841 * 11 10 9 14 14 C 1.50697 * 109.47178 * 175.00253 * 11 10 9 15 15 O 1.21289 * 120.00335 * 99.99340 * 14 11 10 16 16 N 1.34773 * 119.99839 * 279.99639 * 14 11 10 17 17 C 1.40095 * 120.00496 * 174.65427 * 16 14 11 18 18 C 1.38885 * 120.15669 * 325.24974 * 17 16 14 19 19 C 1.37769 * 120.14627 * 179.97438 * 18 17 16 20 20 C 1.39638 * 120.37570 * 359.97438 * 19 18 17 21 21 C 1.38554 * 119.17061 * 0.02562 * 20 19 18 22 22 C 1.38141 * 120.52912 * 0.02562 * 21 20 19 23 23 C 1.51227 * 108.58009 * 180.02562 * 21 20 19 24 24 C 1.53730 * 104.61168 * 0.02562 * 23 21 20 25 25 N 1.40053 * 129.25476 * 180.02562 * 20 19 18 26 26 C 1.34772 * 124.99230 * 359.94882 * 25 20 19 27 27 N 1.34786 * 119.99991 * 185.10148 * 26 25 20 28 28 O 1.21586 * 120.00172 * 5.09959 * 26 25 20 29 29 H 0.97000 * 119.99878 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.47224 * 60.00392 * 9 7 2 31 31 H 1.08996 * 109.47639 * 299.99544 * 9 7 2 32 32 H 1.09001 * 109.47010 * 60.00233 * 10 9 7 33 33 H 1.09000 * 109.47155 * 299.99490 * 10 9 7 34 34 H 1.00909 * 111.00108 * 300.00210 * 13 11 10 35 35 H 1.00896 * 111.00457 * 63.95600 * 13 11 10 36 36 H 0.97002 * 120.00002 * 354.65800 * 16 14 11 37 37 H 1.08000 * 119.92404 * 359.70020 * 18 17 16 38 38 H 1.07999 * 119.81070 * 179.97438 * 19 18 17 39 39 H 1.08001 * 119.95093 * 179.97438 * 22 21 20 40 40 H 1.08991 * 110.40782 * 118.78546 * 23 21 20 41 41 H 1.09000 * 110.40587 * 241.22034 * 23 21 20 42 42 H 1.09004 * 110.29106 * 118.93531 * 24 23 21 43 43 H 1.09004 * 110.29333 * 241.05781 * 24 23 21 44 44 H 0.97000 * 119.99546 * 5.00625 * 27 26 25 45 45 H 0.96993 * 119.99959 * 185.00704 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0017 10 6 2.2452 -3.6621 0.0027 11 6 1.4802 -4.9871 0.0033 12 1 0.7883 -5.0076 -0.8387 13 7 0.7280 -5.1177 1.2584 14 6 2.4547 -6.1300 -0.1195 15 8 2.7863 -6.7529 0.8670 16 7 2.9580 -6.4598 -1.3254 17 6 3.9472 -7.4468 -1.4256 18 6 4.9011 -7.5826 -0.4254 19 6 5.8735 -8.5536 -0.5239 20 6 5.9084 -9.4085 -1.6274 21 6 4.9536 -9.2674 -2.6215 22 6 3.9786 -8.2936 -2.5249 23 6 5.2137 -10.3053 -3.6902 24 6 6.4474 -11.0750 -3.1913 25 7 6.8016 -10.4482 -1.9151 26 6 7.8348 -10.8182 -1.1328 27 7 8.6943 -11.7665 -1.5555 28 8 7.9916 -10.2965 -0.0458 29 1 -0.4850 0.8401 -0.0004 30 1 0.6240 -2.5575 -0.8880 31 1 0.6247 -2.5563 0.8919 32 1 2.8718 -3.6036 0.8927 33 1 2.8718 -3.6052 -0.8873 34 1 1.3476 -5.1015 2.0546 35 1 0.0233 -4.3997 1.3340 36 1 2.6353 -6.0138 -2.1241 37 1 4.8833 -6.9227 0.4293 38 1 6.6129 -8.6542 0.2568 39 1 3.2391 -8.1916 -3.3054 40 1 4.3599 -10.9763 -3.7841 41 1 5.4262 -9.8233 -4.6445 42 1 6.2021 -12.1265 -3.0421 43 1 7.2682 -10.9746 -3.9015 44 1 8.6127 -12.1307 -2.4508 45 1 9.3944 -12.0847 -0.9643 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326040142.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:06:23 Heat of formation + Delta-G solvation = -66.712044 kcal Electronic energy + Delta-G solvation = -27516.410738 eV Core-core repulsion = 23532.094293 eV Total energy + Delta-G solvation = -3984.316445 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.29950 -41.36037 -39.80382 -37.86421 -36.95597 -35.47054 -34.85071 -34.42213 -33.26568 -31.69330 -30.24677 -29.90474 -28.05742 -25.90299 -24.66774 -24.11449 -23.09764 -22.04239 -21.41224 -20.98912 -19.41699 -18.95029 -18.46466 -18.16725 -17.71487 -17.37157 -16.93576 -16.64474 -16.37525 -15.97375 -15.85146 -15.56634 -15.43971 -15.04683 -14.92693 -14.65639 -14.61944 -14.09312 -13.87760 -13.79369 -13.71265 -13.43207 -13.04211 -12.93419 -12.87420 -12.67756 -12.55311 -12.24134 -11.82873 -11.80547 -11.70438 -11.42721 -11.31829 -10.87209 -10.81484 -10.55282 -10.36809 -9.80109 -9.66705 -8.47688 -8.21240 -6.31197 0.15964 0.33933 1.39748 1.41158 1.48462 1.49188 1.51617 1.94229 2.02148 2.39963 2.78798 3.09778 3.12278 3.58697 3.60780 3.65933 3.73256 4.03901 4.10506 4.17214 4.22461 4.24050 4.31425 4.41180 4.59715 4.65459 4.72424 4.82740 4.87766 5.06702 5.08072 5.12468 5.22505 5.28735 5.43115 5.46823 5.48769 5.66229 5.81025 5.85083 5.86635 6.03198 6.06796 6.21673 6.43745 6.46278 6.72498 6.83763 7.13261 7.37541 7.42032 8.89074 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019780 B = 0.002106 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.242388 B =13294.481662 C =13575.202665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.006 3.994 3 Si 0.957 3.043 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.273 1.273 7 C -0.546 4.546 8 H 0.053 0.947 9 C 0.031 3.969 10 C -0.122 4.122 11 C 0.086 3.914 12 H 0.119 0.881 13 N -0.830 5.830 14 C 0.526 3.474 15 O -0.552 6.552 16 N -0.658 5.658 17 C 0.118 3.882 18 C -0.112 4.112 19 C -0.134 4.134 20 C 0.129 3.871 21 C -0.114 4.114 22 C -0.093 4.093 23 C -0.075 4.075 24 C 0.091 3.909 25 N -0.569 5.569 26 C 0.705 3.295 27 N -0.833 5.833 28 O -0.627 6.627 29 H 0.264 0.736 30 H 0.007 0.993 31 H 0.003 0.997 32 H 0.042 0.958 33 H 0.067 0.933 34 H 0.343 0.657 35 H 0.355 0.645 36 H 0.427 0.573 37 H 0.109 0.891 38 H 0.115 0.885 39 H 0.166 0.834 40 H 0.115 0.885 41 H 0.120 0.880 42 H 0.106 0.894 43 H 0.111 0.889 44 H 0.417 0.583 45 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.807 -26.847 -15.122 33.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.193 4.193 3 Si 0.782 3.218 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.199 1.199 7 C -0.584 4.584 8 H 0.071 0.929 9 C -0.006 4.006 10 C -0.162 4.162 11 C -0.029 4.029 12 H 0.137 0.863 13 N -0.362 5.362 14 C 0.314 3.686 15 O -0.428 6.428 16 N -0.306 5.306 17 C 0.023 3.977 18 C -0.133 4.133 19 C -0.156 4.156 20 C 0.032 3.968 21 C -0.118 4.118 22 C -0.114 4.114 23 C -0.112 4.112 24 C -0.029 4.029 25 N -0.296 5.296 26 C 0.405 3.595 27 N -0.403 5.403 28 O -0.508 6.508 29 H 0.073 0.927 30 H 0.025 0.975 31 H 0.021 0.979 32 H 0.061 0.939 33 H 0.086 0.914 34 H 0.156 0.844 35 H 0.170 0.830 36 H 0.266 0.734 37 H 0.127 0.873 38 H 0.133 0.867 39 H 0.184 0.816 40 H 0.133 0.867 41 H 0.138 0.862 42 H 0.124 0.876 43 H 0.129 0.871 44 H 0.250 0.750 45 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 12.740 -27.548 -14.000 33.425 hybrid contribution 0.870 2.202 0.559 2.433 sum 13.610 -25.346 -13.440 31.754 Atomic orbital electron populations 1.70045 1.07361 1.27806 1.51218 1.25844 0.95759 1.02872 0.94801 0.85620 0.78396 0.78793 0.78955 1.19229 1.20734 1.19863 1.21585 0.93286 0.92539 1.50979 0.92906 1.18963 0.93968 0.91737 0.95956 1.22156 0.98879 0.93698 1.01482 1.21388 0.94614 0.90508 0.96421 0.86316 1.58760 1.18409 1.55756 1.03274 1.20996 0.80905 0.84049 0.82688 1.90666 1.60583 1.53291 1.38246 1.43357 1.38547 1.38446 1.10202 1.17666 0.90148 0.92825 0.97015 1.20748 0.93827 0.99218 0.99534 1.20630 1.00053 0.96459 0.98421 1.18271 0.92138 0.90682 0.95683 1.20112 0.95244 0.99237 0.97185 1.20327 0.99552 0.93106 0.98411 1.21227 0.98151 0.94764 0.97061 1.22595 0.99193 0.98739 0.82378 1.45049 1.27314 1.33423 1.23820 1.15939 0.79896 0.80879 0.82758 1.42699 1.34195 1.42353 1.21027 1.90957 1.76631 1.59576 1.23609 0.92716 0.97507 0.97856 0.93927 0.91395 0.84368 0.82963 0.73365 0.87299 0.86717 0.81629 0.86722 0.86233 0.87575 0.87052 0.75046 0.74057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.99 13.29 21.45 0.28 -53.70 16 2 C 0.01 0.33 5.46 84.66 0.46 0.79 16 3 Si 0.96 43.59 29.54 68.60 2.03 45.61 16 4 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 6 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 7 C -0.55 -29.99 9.11 25.60 0.23 -29.76 16 8 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 9 C 0.03 1.50 4.74 29.85 0.14 1.64 16 10 C -0.12 -4.74 4.78 30.60 0.15 -4.60 16 11 C 0.09 2.83 3.21 44.17 0.14 2.97 16 12 H 0.12 3.45 8.14 -2.39 -0.02 3.43 16 13 N -0.83 -28.62 8.94 -171.80 -1.54 -30.15 16 14 C 0.53 17.39 6.81 87.66 0.60 17.98 16 15 O -0.55 -22.24 14.05 -3.06 -0.04 -22.28 16 16 N -0.66 -17.00 5.35 -303.42 -1.62 -18.63 16 17 C 0.12 3.17 6.26 38.11 0.24 3.41 16 18 C -0.11 -3.67 8.63 22.31 0.19 -3.47 16 19 C -0.13 -4.24 9.45 22.50 0.21 -4.02 16 20 C 0.13 3.12 6.63 38.24 0.25 3.38 16 21 C -0.11 -1.99 6.22 -19.64 -0.12 -2.11 16 22 C -0.09 -1.77 9.96 22.38 0.22 -1.55 16 23 C -0.08 -0.47 6.93 30.26 0.21 -0.26 16 24 C 0.09 0.51 6.39 86.62 0.55 1.06 16 25 N -0.57 -10.17 3.13 -646.12 -2.02 -12.20 16 26 C 0.71 14.76 8.69 179.05 1.56 16.32 16 27 N -0.83 -7.29 8.81 -184.74 -1.63 -8.92 16 28 O -0.63 -20.29 15.37 -3.99 -0.06 -20.35 16 29 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 30 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.00 0.16 6.87 -2.39 -0.02 0.15 16 32 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 34 H 0.34 12.27 8.58 -89.69 -0.77 11.50 16 35 H 0.35 12.27 7.55 -89.70 -0.68 11.59 16 36 H 0.43 8.04 8.82 -92.71 -0.82 7.22 16 37 H 0.11 4.09 6.54 -2.91 -0.02 4.07 16 38 H 0.11 4.15 6.29 -2.91 -0.02 4.13 16 39 H 0.17 1.91 8.06 -2.91 -0.02 1.88 16 40 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 41 H 0.12 0.21 8.14 -2.39 -0.02 0.19 16 42 H 0.11 0.11 8.14 -2.38 -0.02 0.09 16 43 H 0.11 -0.04 8.04 -2.38 -0.02 -0.05 16 44 H 0.42 0.30 7.74 -92.71 -0.72 -0.41 16 45 H 0.43 2.91 8.93 -92.71 -0.83 2.08 16 Total: -1.00 -83.54 373.53 -2.28 -85.82 By element: Atomic # 1 Polarization: 35.72 SS G_CDS: -2.71 Total: 33.01 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: 5.04 Total: 1.78 kcal Atomic # 7 Polarization: -117.07 SS G_CDS: -6.53 Total: -123.59 kcal Atomic # 8 Polarization: -42.53 SS G_CDS: -0.10 Total: -42.63 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Total: -83.54 -2.28 -85.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326040142.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.108 kcal (2) G-P(sol) polarization free energy of solvation -83.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds