Wall clock time and date at job start Sat Apr 11 2020 03:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 119.99302 * 2 1 4 4 H 1.48507 * 109.47130 * 269.99498 * 3 2 1 5 5 H 1.48497 * 109.47509 * 29.99659 * 3 2 1 6 6 H 1.48503 * 109.47298 * 149.99833 * 3 2 1 7 7 C 1.38805 * 120.00704 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00220 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99835 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99819 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46817 * 179.97438 * 10 9 7 12 12 N 1.46497 * 109.46935 * 179.97438 * 11 10 9 13 13 C 1.46495 * 120.00246 * 270.00008 * 12 11 10 14 14 C 1.53004 * 109.46963 * 269.99932 * 13 12 11 15 15 O 1.42898 * 109.47054 * 65.00096 * 14 13 12 16 16 C 1.34780 * 119.99709 * 89.99888 * 12 11 10 17 17 O 1.21282 * 120.00308 * 0.02562 * 16 12 11 18 18 C 1.50702 * 119.99864 * 179.97438 * 16 12 11 19 19 C 1.50698 * 109.46990 * 180.02562 * 18 16 12 20 20 C 1.35108 * 125.68613 * 125.00185 * 19 18 16 21 21 N 1.36838 * 107.18141 * 180.02562 * 20 19 18 22 22 C 1.36482 * 132.57179 * 179.97438 * 21 20 19 23 23 C 1.34948 * 120.61123 * 179.97438 * 22 21 20 24 24 C 1.40477 * 120.29984 * 0.03985 * 23 22 21 25 25 C 1.36025 * 119.69114 * 359.97438 * 24 23 22 26 26 C 1.37081 * 106.99516 * 0.02562 * 21 20 19 27 27 N 1.32556 * 108.04019 * 359.97438 * 26 21 20 28 28 H 0.96995 * 120.00575 * 359.97438 * 1 2 3 29 29 H 0.97000 * 120.00182 * 359.97438 * 9 7 2 30 30 H 1.08994 * 109.47262 * 59.99588 * 10 9 7 31 31 H 1.08996 * 109.47032 * 299.99127 * 10 9 7 32 32 H 1.09003 * 109.46981 * 59.99389 * 11 10 9 33 33 H 1.08996 * 109.46840 * 299.99530 * 11 10 9 34 34 H 1.08994 * 109.47486 * 29.99810 * 13 12 11 35 35 H 1.08995 * 109.47359 * 150.00430 * 13 12 11 36 36 H 1.09005 * 109.47202 * 184.99895 * 14 13 12 37 37 H 1.08992 * 109.47646 * 304.99944 * 14 13 12 38 38 H 0.96698 * 114.00318 * 179.97438 * 15 14 13 39 39 H 1.08999 * 109.46706 * 60.00311 * 18 16 12 40 40 H 1.09004 * 109.47466 * 300.00276 * 18 16 12 41 41 H 1.08005 * 126.41030 * 0.02562 * 20 19 18 42 42 H 1.08003 * 119.69297 * 0.03648 * 22 21 20 43 43 H 1.07998 * 119.85026 * 180.02562 * 23 22 21 44 44 H 1.08001 * 120.15010 * 180.25917 * 24 23 22 45 45 H 1.08000 * 120.33361 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6179 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4474 2.6528 0.6999 6 1 3.5476 1.4405 0.7001 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2019 0.0001 9 7 1.3258 -2.3880 0.0005 10 6 2.0584 -3.6567 0.0017 11 6 1.0643 -4.8197 0.0021 12 7 1.7969 -6.0883 0.0026 13 6 2.1633 -6.7231 -1.2658 14 6 1.0416 -7.6656 -1.7071 15 8 -0.1349 -6.9058 -1.9907 16 6 2.1338 -6.6714 1.1701 17 8 1.8301 -6.1461 2.2202 18 6 2.8870 -7.9767 1.1707 19 6 3.1376 -8.4114 2.5917 20 6 2.7868 -9.6020 3.1252 21 7 3.1929 -9.5948 4.4319 22 6 3.1011 -10.5185 5.4324 23 6 3.5951 -10.2534 6.6599 24 6 4.2113 -9.0190 6.9245 25 6 4.3092 -8.0893 5.9364 26 6 3.7879 -8.3811 4.6599 27 7 3.7427 -7.6837 3.5335 28 1 -0.4851 0.8400 0.0004 29 1 0.3558 -2.3881 0.0005 30 1 2.6844 -3.7139 0.8921 31 1 2.6857 -3.7148 -0.8878 32 1 0.4379 -4.7625 -0.8882 33 1 0.4374 -4.7614 0.8918 34 1 2.3137 -5.9565 -2.0258 35 1 3.0844 -7.2909 -1.1352 36 1 1.3509 -8.2041 -2.6029 37 1 0.8306 -8.3779 -0.9097 38 1 -0.8884 -7.4397 -2.2774 39 1 3.8393 -7.8468 0.6567 40 1 2.2976 -8.7365 0.6573 41 1 2.2805 -10.4086 2.6157 42 1 2.6295 -11.4709 5.2397 43 1 3.5162 -10.9934 7.4425 44 1 4.6096 -8.8110 7.9066 45 1 4.7813 -7.1371 6.1282 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326046796.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:06:26 Heat of formation + Delta-G solvation = 31.248706 kcal Electronic energy + Delta-G solvation = -27795.942440 eV Core-core repulsion = 23815.873892 eV Total energy + Delta-G solvation = -3980.068548 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.94429 -39.75658 -37.68034 -37.04991 -35.41599 -34.19310 -33.81248 -32.27666 -31.22042 -29.54172 -29.33629 -28.28128 -26.80388 -23.86958 -23.33598 -23.03416 -22.86113 -21.58896 -20.70211 -18.81404 -17.96592 -17.75417 -17.10853 -16.98831 -16.71954 -16.16300 -15.90497 -15.80583 -15.06608 -14.79207 -14.56782 -14.41124 -14.26631 -13.69348 -13.50735 -13.39371 -13.18387 -12.84008 -12.71132 -12.57347 -12.44763 -12.15257 -11.99157 -11.81419 -11.45366 -11.20054 -11.04556 -10.82097 -10.76391 -10.48330 -10.15071 -10.07465 -9.99908 -9.64258 -9.45682 -8.85173 -8.73421 -8.30862 -8.02109 -6.77956 -5.63030 -2.91225 0.52902 1.07569 2.38910 2.63123 2.93761 3.22694 3.43756 3.53099 3.57632 3.60530 3.98390 4.12207 4.15302 4.43019 4.55428 4.65027 4.73064 4.82302 4.87092 4.95955 5.00419 5.09607 5.17357 5.21831 5.28855 5.38302 5.51188 5.61922 5.68138 5.70726 5.79740 5.92567 5.94380 6.10146 6.24220 6.25835 6.39737 6.43560 6.76886 6.89436 6.94973 7.14708 7.51434 7.72994 7.82974 7.83170 8.52450 8.56576 9.66374 10.24858 10.60164 11.60185 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011134 B = 0.002745 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2514.120331 B =10199.436560 C =12253.720868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.017 4.017 3 Si 0.908 3.092 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.232 4.232 8 H 0.069 0.931 9 N -0.730 5.730 10 C 0.142 3.858 11 C 0.115 3.885 12 N -0.603 5.603 13 C 0.106 3.894 14 C 0.058 3.942 15 O -0.561 6.561 16 C 0.511 3.489 17 O -0.510 6.510 18 C -0.060 4.060 19 C 0.081 3.919 20 C -0.097 4.097 21 N -0.363 5.363 22 C 0.053 3.947 23 C -0.144 4.144 24 C -0.111 4.111 25 C -0.070 4.070 26 C 0.220 3.780 27 N -0.456 5.456 28 H 0.254 0.746 29 H 0.384 0.616 30 H 0.022 0.978 31 H 0.015 0.985 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.053 0.947 37 H 0.044 0.956 38 H 0.376 0.624 39 H 0.109 0.891 40 H 0.104 0.896 41 H 0.181 0.819 42 H 0.160 0.840 43 H 0.148 0.852 44 H 0.141 0.859 45 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.110 -31.193 5.206 32.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.212 4.212 3 Si 0.739 3.261 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.364 4.364 8 H 0.087 0.913 9 N -0.374 5.374 10 C 0.014 3.986 11 C -0.007 4.007 12 N -0.337 5.337 13 C -0.019 4.019 14 C -0.021 4.021 15 O -0.366 6.366 16 C 0.297 3.703 17 O -0.383 6.383 18 C -0.101 4.101 19 C -0.053 4.053 20 C -0.228 4.228 21 N -0.035 5.035 22 C -0.069 4.069 23 C -0.165 4.165 24 C -0.135 4.135 25 C -0.090 4.090 26 C -0.023 4.023 27 N -0.174 5.174 28 H 0.064 0.936 29 H 0.217 0.783 30 H 0.040 0.960 31 H 0.033 0.967 32 H 0.103 0.897 33 H 0.097 0.903 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.072 0.928 37 H 0.062 0.938 38 H 0.222 0.778 39 H 0.127 0.873 40 H 0.122 0.878 41 H 0.198 0.802 42 H 0.178 0.822 43 H 0.166 0.834 44 H 0.159 0.841 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 6.750 -29.527 5.805 30.840 hybrid contribution -0.574 -0.501 -0.171 0.781 sum 6.175 -30.028 5.634 31.170 Atomic orbital electron populations 1.69668 1.05071 1.25490 1.58175 1.24736 0.95549 0.97624 1.03329 0.86167 0.78671 0.83864 0.77399 1.21806 1.21805 1.20779 1.19227 0.90999 0.84070 1.42085 0.91258 1.42214 1.05871 0.99842 1.89499 1.20924 0.94013 0.85827 0.97846 1.21651 0.94452 0.81163 1.03448 1.47786 1.57491 1.23565 1.04827 1.21690 0.95673 0.97401 0.87089 1.22720 0.87056 0.93783 0.98591 1.86616 1.22382 1.37504 1.90092 1.20251 0.80139 0.86096 0.83791 1.90781 1.52696 1.64234 1.30638 1.20089 1.02037 0.96427 0.91553 1.20104 0.99348 0.90398 0.95440 1.22264 1.13863 1.03224 0.83452 1.42806 1.37879 1.13677 1.09154 1.21562 1.02950 0.94604 0.87828 1.20784 1.01107 0.98862 0.95770 1.21009 0.99670 0.93086 0.99702 1.20356 0.99391 1.01149 0.88142 1.21034 1.01575 0.83060 0.96635 1.70713 1.20615 1.28494 0.97614 0.93612 0.78290 0.96018 0.96677 0.89669 0.90318 0.88968 0.89075 0.92841 0.93784 0.77756 0.87329 0.87830 0.80152 0.82241 0.83394 0.84103 0.83102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.96 13.06 55.49 0.72 -29.23 16 2 C -0.02 -0.52 5.50 -17.43 -0.10 -0.61 16 3 Si 0.91 23.74 29.55 -169.99 -5.02 18.72 16 4 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 5 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 6 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 7 C -0.23 -7.07 9.99 -15.06 -0.15 -7.22 16 8 H 0.07 2.05 7.83 -52.49 -0.41 1.64 16 9 N -0.73 -20.53 5.60 -59.91 -0.34 -20.87 16 10 C 0.14 3.33 6.58 -4.04 -0.03 3.30 16 11 C 0.12 2.25 5.34 -4.04 -0.02 2.23 16 12 N -0.60 -9.28 2.44 -173.69 -0.42 -9.70 16 13 C 0.11 1.12 5.62 -4.04 -0.02 1.09 16 14 C 0.06 0.48 7.38 37.16 0.27 0.76 16 15 O -0.56 -6.15 12.48 -35.23 -0.44 -6.59 16 16 C 0.51 8.41 7.66 -10.98 -0.08 8.32 16 17 O -0.51 -11.16 15.13 5.56 0.08 -11.08 16 18 C -0.06 -0.68 4.81 -29.03 -0.14 -0.82 16 19 C 0.08 1.12 5.85 -82.97 -0.49 0.63 16 20 C -0.10 -1.05 11.63 -16.43 -0.19 -1.24 16 21 N -0.36 -4.10 2.95 -62.66 -0.18 -4.28 16 22 C 0.05 0.40 10.95 -16.65 -0.18 0.21 16 23 C -0.14 -0.92 9.99 -39.91 -0.40 -1.31 16 24 C -0.11 -0.84 10.07 -39.53 -0.40 -1.24 16 25 C -0.07 -0.77 10.11 -39.36 -0.40 -1.17 16 26 C 0.22 3.10 7.81 -156.04 -1.22 1.88 16 27 N -0.46 -7.68 10.67 -9.01 -0.10 -7.78 16 28 H 0.25 7.82 8.31 -40.82 -0.34 7.48 16 29 H 0.38 11.21 7.67 -40.82 -0.31 10.90 16 30 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.08 1.64 7.11 -51.93 -0.37 1.27 16 33 H 0.08 1.73 7.42 -51.93 -0.39 1.34 16 34 H 0.09 1.07 8.07 -51.93 -0.42 0.65 16 35 H 0.09 0.66 6.44 -51.93 -0.33 0.33 16 36 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.04 0.33 7.30 -51.93 -0.38 -0.05 16 38 H 0.38 2.40 9.12 45.56 0.42 2.82 16 39 H 0.11 1.02 7.40 -51.93 -0.38 0.64 16 40 H 0.10 0.75 7.22 -51.93 -0.37 0.38 16 41 H 0.18 1.19 8.06 -52.48 -0.42 0.77 16 42 H 0.16 0.63 8.06 -52.48 -0.42 0.21 16 43 H 0.15 0.44 8.06 -52.49 -0.42 0.02 16 44 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 45 H 0.15 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 381.10 15.07 5.74 5.74 Total: -1.00 -42.76 381.10 -8.96 -51.72 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -5.47 Total: 8.53 kcal Atomic # 6 Polarization: 8.36 SS G_CDS: -3.54 Total: 4.82 kcal Atomic # 7 Polarization: -71.55 SS G_CDS: -0.31 Total: -71.86 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -0.36 Total: -17.67 kcal Atomic # 14 Polarization: 23.74 SS G_CDS: -5.02 Total: 18.72 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -42.76 -8.96 -51.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326046796.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.973 kcal (2) G-P(sol) polarization free energy of solvation -42.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds