Wall clock time and date at job start Sat Apr 11 2020 03:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 119.99302 * 2 1 4 4 H 1.48507 * 109.47130 * 269.99498 * 3 2 1 5 5 H 1.48497 * 109.47509 * 29.99659 * 3 2 1 6 6 H 1.48503 * 109.47298 * 149.99833 * 3 2 1 7 7 C 1.38805 * 120.00704 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00220 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99835 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99819 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46817 * 179.97438 * 10 9 7 12 12 N 1.46497 * 109.46935 * 179.97438 * 11 10 9 13 13 C 1.46495 * 120.00246 * 270.00008 * 12 11 10 14 14 C 1.53004 * 109.46963 * 269.99932 * 13 12 11 15 15 O 1.42898 * 109.47054 * 65.00096 * 14 13 12 16 16 C 1.34780 * 119.99709 * 89.99888 * 12 11 10 17 17 O 1.21282 * 120.00308 * 0.02562 * 16 12 11 18 18 C 1.50702 * 119.99864 * 179.97438 * 16 12 11 19 19 C 1.50698 * 109.46990 * 180.02562 * 18 16 12 20 20 C 1.35108 * 125.68613 * 125.00185 * 19 18 16 21 21 N 1.36838 * 107.18141 * 180.02562 * 20 19 18 22 22 C 1.36482 * 132.57179 * 179.97438 * 21 20 19 23 23 C 1.34948 * 120.61123 * 179.97438 * 22 21 20 24 24 C 1.40477 * 120.29984 * 0.03985 * 23 22 21 25 25 C 1.36025 * 119.69114 * 359.97438 * 24 23 22 26 26 C 1.37081 * 106.99516 * 0.02562 * 21 20 19 27 27 N 1.32556 * 108.04019 * 359.97438 * 26 21 20 28 28 H 0.96995 * 120.00575 * 359.97438 * 1 2 3 29 29 H 0.97000 * 120.00182 * 359.97438 * 9 7 2 30 30 H 1.08994 * 109.47262 * 59.99588 * 10 9 7 31 31 H 1.08996 * 109.47032 * 299.99127 * 10 9 7 32 32 H 1.09003 * 109.46981 * 59.99389 * 11 10 9 33 33 H 1.08996 * 109.46840 * 299.99530 * 11 10 9 34 34 H 1.08994 * 109.47486 * 29.99810 * 13 12 11 35 35 H 1.08995 * 109.47359 * 150.00430 * 13 12 11 36 36 H 1.09005 * 109.47202 * 184.99895 * 14 13 12 37 37 H 1.08992 * 109.47646 * 304.99944 * 14 13 12 38 38 H 0.96698 * 114.00318 * 179.97438 * 15 14 13 39 39 H 1.08999 * 109.46706 * 60.00311 * 18 16 12 40 40 H 1.09004 * 109.47466 * 300.00276 * 18 16 12 41 41 H 1.08005 * 126.41030 * 0.02562 * 20 19 18 42 42 H 1.08003 * 119.69297 * 0.03648 * 22 21 20 43 43 H 1.07998 * 119.85026 * 180.02562 * 23 22 21 44 44 H 1.08001 * 120.15010 * 180.25917 * 24 23 22 45 45 H 1.08000 * 120.33361 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6179 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4474 2.6528 0.6999 6 1 3.5476 1.4405 0.7001 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2019 0.0001 9 7 1.3258 -2.3880 0.0005 10 6 2.0584 -3.6567 0.0017 11 6 1.0643 -4.8197 0.0021 12 7 1.7969 -6.0883 0.0026 13 6 2.1633 -6.7231 -1.2658 14 6 1.0416 -7.6656 -1.7071 15 8 -0.1349 -6.9058 -1.9907 16 6 2.1338 -6.6714 1.1701 17 8 1.8301 -6.1461 2.2202 18 6 2.8870 -7.9767 1.1707 19 6 3.1376 -8.4114 2.5917 20 6 2.7868 -9.6020 3.1252 21 7 3.1929 -9.5948 4.4319 22 6 3.1011 -10.5185 5.4324 23 6 3.5951 -10.2534 6.6599 24 6 4.2113 -9.0190 6.9245 25 6 4.3092 -8.0893 5.9364 26 6 3.7879 -8.3811 4.6599 27 7 3.7427 -7.6837 3.5335 28 1 -0.4851 0.8400 0.0004 29 1 0.3558 -2.3881 0.0005 30 1 2.6844 -3.7139 0.8921 31 1 2.6857 -3.7148 -0.8878 32 1 0.4379 -4.7625 -0.8882 33 1 0.4374 -4.7614 0.8918 34 1 2.3137 -5.9565 -2.0258 35 1 3.0844 -7.2909 -1.1352 36 1 1.3509 -8.2041 -2.6029 37 1 0.8306 -8.3779 -0.9097 38 1 -0.8884 -7.4397 -2.2774 39 1 3.8393 -7.8468 0.6567 40 1 2.2976 -8.7365 0.6573 41 1 2.2805 -10.4086 2.6157 42 1 2.6295 -11.4709 5.2397 43 1 3.5162 -10.9934 7.4425 44 1 4.6096 -8.8110 7.9066 45 1 4.7813 -7.1371 6.1282 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326046796.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:06:25 Heat of formation + Delta-G solvation = -2.204907 kcal Electronic energy + Delta-G solvation = -27797.393097 eV Core-core repulsion = 23815.873892 eV Total energy + Delta-G solvation = -3981.519205 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.71712 -40.98945 -38.42994 -37.94191 -37.05992 -35.83791 -34.57306 -33.71015 -32.77263 -30.77826 -30.18206 -29.29446 -28.22346 -25.66324 -24.31235 -23.87632 -23.61541 -23.31584 -21.77634 -20.02250 -19.20042 -18.72315 -18.54324 -17.80341 -17.69779 -17.34662 -16.77394 -16.73648 -16.42532 -16.16786 -15.53449 -15.40457 -15.25461 -15.23963 -15.08359 -14.94355 -14.51789 -14.03813 -13.82928 -13.55342 -13.26963 -13.11559 -13.01891 -12.90342 -12.74236 -12.59351 -12.50347 -12.39290 -12.15210 -12.11369 -11.97380 -11.89634 -11.00690 -11.00588 -10.84847 -10.72110 -9.64904 -9.62059 -9.09606 -8.76678 -7.99592 -5.31246 -0.11893 0.36722 1.42859 1.47125 1.55684 1.66719 1.71782 1.81069 2.16046 2.54167 2.63288 3.24312 3.32597 3.47881 3.51343 3.65523 3.89739 3.98159 4.06686 4.16556 4.19410 4.21801 4.26202 4.33080 4.33859 4.42149 4.51202 4.54833 4.59528 4.63210 4.73722 4.85894 4.96709 4.99388 5.07201 5.08619 5.15659 5.30273 5.39958 5.58249 5.62750 5.65818 6.21267 6.21526 6.50591 7.01008 7.04832 7.26648 7.29979 7.98129 8.25024 9.24118 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011134 B = 0.002745 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2514.120331 B =10199.436560 C =12253.720868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.075 4.075 3 Si 0.982 3.018 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.273 1.273 7 C -0.253 4.253 8 H 0.071 0.929 9 N -0.743 5.743 10 C 0.151 3.849 11 C 0.136 3.864 12 N -0.600 5.600 13 C 0.093 3.907 14 C 0.059 3.941 15 O -0.597 6.597 16 C 0.504 3.496 17 O -0.578 6.578 18 C -0.046 4.046 19 C 0.042 3.958 20 C -0.087 4.087 21 N -0.368 5.368 22 C 0.046 3.954 23 C -0.142 4.142 24 C -0.086 4.086 25 C -0.120 4.120 26 C 0.191 3.809 27 N -0.527 5.527 28 H 0.254 0.746 29 H 0.374 0.626 30 H -0.007 1.007 31 H 0.028 0.972 32 H 0.090 0.910 33 H 0.045 0.955 34 H 0.080 0.920 35 H 0.131 0.869 36 H 0.091 0.909 37 H 0.060 0.940 38 H 0.393 0.607 39 H 0.128 0.872 40 H 0.153 0.847 41 H 0.227 0.773 42 H 0.202 0.798 43 H 0.192 0.808 44 H 0.172 0.828 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.838 -34.807 4.977 35.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.268 4.268 3 Si 0.810 3.190 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.198 1.198 7 C -0.384 4.384 8 H 0.089 0.911 9 N -0.386 5.386 10 C 0.023 3.977 11 C 0.012 3.988 12 N -0.332 5.332 13 C -0.028 4.028 14 C -0.020 4.020 15 O -0.405 6.405 16 C 0.293 3.707 17 O -0.456 6.456 18 C -0.086 4.086 19 C -0.091 4.091 20 C -0.218 4.218 21 N -0.040 5.040 22 C -0.075 4.075 23 C -0.162 4.162 24 C -0.110 4.110 25 C -0.140 4.140 26 C -0.052 4.052 27 N -0.247 5.247 28 H 0.063 0.937 29 H 0.206 0.794 30 H 0.011 0.989 31 H 0.046 0.954 32 H 0.109 0.891 33 H 0.064 0.936 34 H 0.098 0.902 35 H 0.149 0.851 36 H 0.109 0.891 37 H 0.078 0.922 38 H 0.243 0.757 39 H 0.146 0.854 40 H 0.171 0.829 41 H 0.243 0.757 42 H 0.219 0.781 43 H 0.209 0.791 44 H 0.189 0.811 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 7.504 -33.214 5.523 34.496 hybrid contribution -0.788 0.507 0.009 0.937 sum 6.716 -32.707 5.533 33.845 Atomic orbital electron populations 1.69836 1.06706 1.26398 1.58988 1.25692 0.96591 1.01396 1.03071 0.85023 0.77450 0.78707 0.77835 1.20468 1.21659 1.19782 1.19604 0.91364 0.85280 1.42203 0.91067 1.42402 1.05606 1.01037 1.89523 1.20940 0.94393 0.85671 0.96672 1.21118 0.93409 0.82308 1.01937 1.47875 1.56548 1.21933 1.06879 1.22164 0.98602 0.97836 0.84221 1.22810 0.85450 0.92999 1.00709 1.86559 1.23977 1.39560 1.90448 1.21287 0.79267 0.87436 0.82741 1.90750 1.55393 1.66336 1.33114 1.20182 1.02678 0.94190 0.91551 1.20601 1.00658 0.91671 0.96184 1.22887 1.12436 1.03217 0.83220 1.43054 1.37399 1.13443 1.10068 1.22449 1.02492 0.95239 0.87363 1.21378 0.99459 0.98869 0.96536 1.21494 0.97098 0.92557 0.99808 1.20516 1.02394 1.02426 0.88680 1.21368 1.02577 0.84353 0.96926 1.70594 1.23380 1.31083 0.99637 0.93696 0.79392 0.98928 0.95399 0.89147 0.93608 0.90192 0.85118 0.89124 0.92180 0.75701 0.85390 0.82902 0.75698 0.78096 0.79054 0.81066 0.84166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -63.57 13.06 21.65 0.28 -63.29 16 2 C -0.08 -4.69 5.50 84.86 0.47 -4.23 16 3 Si 0.98 49.50 29.55 68.60 2.03 51.53 16 4 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 5 H -0.29 -14.49 7.11 99.48 0.71 -13.78 16 6 H -0.27 -13.21 7.11 99.48 0.71 -12.51 16 7 C -0.25 -15.82 9.99 84.03 0.84 -14.98 16 8 H 0.07 4.32 7.83 -2.91 -0.02 4.30 16 9 N -0.74 -43.74 5.60 -343.46 -1.92 -45.67 16 10 C 0.15 7.44 6.58 86.38 0.57 8.01 16 11 C 0.14 5.63 5.34 86.38 0.46 6.09 16 12 N -0.60 -18.67 2.44 -821.82 -2.00 -20.67 16 13 C 0.09 1.80 5.62 86.38 0.49 2.28 16 14 C 0.06 0.80 7.38 71.98 0.53 1.33 16 15 O -0.60 -12.23 12.48 -148.98 -1.86 -14.09 16 16 C 0.50 17.02 7.66 87.66 0.67 17.69 16 17 O -0.58 -27.23 15.13 -3.03 -0.05 -27.27 16 18 C -0.05 -0.98 4.81 29.10 0.14 -0.84 16 19 C 0.04 1.15 5.85 41.58 0.24 1.39 16 20 C -0.09 -1.72 11.63 83.19 0.97 -0.75 16 21 N -0.37 -7.87 2.95 -352.15 -1.04 -8.91 16 22 C 0.05 0.54 10.95 83.21 0.91 1.45 16 23 C -0.14 -1.31 9.99 22.06 0.22 -1.09 16 24 C -0.09 -1.17 10.07 22.30 0.22 -0.95 16 25 C -0.12 -2.80 10.11 22.42 0.23 -2.57 16 26 C 0.19 5.66 7.81 134.11 1.05 6.71 16 27 N -0.53 -19.00 10.67 -182.40 -1.95 -20.95 16 28 H 0.25 15.93 8.31 -92.71 -0.77 15.15 16 29 H 0.37 23.05 7.67 -92.71 -0.71 22.34 16 30 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 31 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.09 3.62 7.11 -2.39 -0.02 3.60 16 33 H 0.05 2.18 7.42 -2.39 -0.02 2.16 16 34 H 0.08 1.76 8.07 -2.39 -0.02 1.74 16 35 H 0.13 1.45 6.44 -2.39 -0.02 1.43 16 36 H 0.09 0.63 8.14 -2.38 -0.02 0.61 16 37 H 0.06 0.64 7.30 -2.39 -0.02 0.63 16 38 H 0.39 4.40 9.12 -74.06 -0.68 3.72 16 39 H 0.13 2.16 7.40 -2.39 -0.02 2.14 16 40 H 0.15 1.59 7.22 -2.38 -0.02 1.58 16 41 H 0.23 2.00 8.06 -2.91 -0.02 1.97 16 42 H 0.20 0.56 8.06 -2.91 -0.02 0.53 16 43 H 0.19 0.07 8.06 -2.91 -0.02 0.05 16 44 H 0.17 1.16 8.06 -2.91 -0.02 1.13 16 45 H 0.14 3.27 8.06 -2.91 -0.02 3.25 16 Total: -1.00 -102.71 381.10 1.15 -101.56 By element: Atomic # 1 Polarization: 28.56 SS G_CDS: -0.36 Total: 28.20 kcal Atomic # 6 Polarization: 11.54 SS G_CDS: 8.01 Total: 19.55 kcal Atomic # 7 Polarization: -152.85 SS G_CDS: -6.63 Total: -159.48 kcal Atomic # 8 Polarization: -39.45 SS G_CDS: -1.91 Total: -41.36 kcal Atomic # 14 Polarization: 49.50 SS G_CDS: 2.03 Total: 51.53 kcal Total: -102.71 1.15 -101.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326046796.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.358 kcal (2) G-P(sol) polarization free energy of solvation -102.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds