Wall clock time and date at job start Sat Apr 11 2020 03:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86795 * 120.00202 * 2 1 4 4 H 1.48497 * 109.47436 * 89.99952 * 3 2 1 5 5 H 1.48503 * 109.47317 * 210.00236 * 3 2 1 6 6 H 1.48505 * 109.47076 * 329.99917 * 3 2 1 7 7 C 1.38820 * 119.99962 * 180.27485 * 2 1 3 8 8 H 1.07998 * 119.99892 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99715 * 359.97438 * 7 2 1 10 10 C 1.46498 * 119.99453 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47011 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47446 * 180.02562 * 11 10 9 13 13 H 1.08998 * 110.88645 * 305.70428 * 12 11 10 14 14 C 1.55154 * 111.00853 * 181.81781 * 12 11 10 15 15 C 1.54364 * 102.92462 * 206.45493 * 14 12 11 16 16 N 1.47021 * 107.28674 * 22.13699 * 15 14 12 17 17 C 1.34783 * 125.64527 * 181.05899 * 16 15 14 18 18 O 1.21537 * 119.99585 * 174.50653 * 17 16 15 19 19 C 1.48003 * 119.99993 * 354.50005 * 17 16 15 20 20 C 1.39863 * 120.46339 * 6.72561 * 19 17 16 21 21 C 1.38458 * 118.35523 * 179.75506 * 20 19 17 22 22 C 1.39302 * 119.18806 * 0.52183 * 21 20 19 23 23 C 1.48334 * 119.56810 * 179.74276 * 22 21 20 24 24 N 1.34780 * 119.99829 * 179.97438 * 23 22 21 25 25 O 1.21490 * 120.00545 * 359.97438 * 23 22 21 26 26 N 1.32711 * 120.86135 * 359.71735 * 22 21 20 27 27 C 1.31414 * 121.79965 * 0.02651 * 26 22 21 28 28 C 1.47421 * 108.70570 * 1.09593 * 16 15 14 29 29 H 0.96990 * 119.99993 * 359.72723 * 1 2 3 30 30 H 0.96993 * 119.99942 * 0.02562 * 9 7 2 31 31 H 1.08993 * 109.47638 * 300.00342 * 10 9 7 32 32 H 1.09001 * 109.47388 * 60.00672 * 10 9 7 33 33 H 1.09001 * 109.46809 * 300.00202 * 11 10 9 34 34 H 1.09001 * 109.47173 * 60.00284 * 11 10 9 35 35 H 1.08998 * 110.72042 * 324.79116 * 14 12 11 36 36 H 1.09003 * 110.71947 * 88.05974 * 14 12 11 37 37 H 1.09006 * 109.84670 * 262.73522 * 15 14 12 38 38 H 1.08998 * 109.90280 * 141.57583 * 15 14 12 39 39 H 1.07999 * 120.82267 * 0.02562 * 20 19 17 40 40 H 1.07998 * 120.40553 * 180.28092 * 21 20 19 41 41 H 0.96995 * 120.00111 * 0.02562 * 24 23 22 42 42 H 0.97005 * 119.99891 * 180.02562 * 24 23 22 43 43 H 1.07994 * 119.64344 * 180.02562 * 27 26 22 44 44 H 1.09001 * 110.36914 * 217.03147 * 28 16 15 45 45 H 1.09001 * 110.45798 * 94.75380 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 1.4000 5 1 3.5478 1.4401 -0.7001 6 1 1.4477 2.6526 -0.7001 7 6 2.0103 -1.2022 -0.0058 8 1 3.0903 -1.2022 -0.0053 9 7 1.3255 -2.3881 -0.0109 10 6 2.0581 -3.6567 -0.0176 11 6 1.0638 -4.8197 -0.0230 12 6 1.8288 -6.1447 -0.0293 13 1 2.5377 -6.1802 -0.8565 14 6 0.8531 -7.3500 -0.0809 15 6 1.6643 -8.4797 0.5887 16 7 2.6935 -7.8429 1.4234 17 6 3.6203 -8.4898 2.1577 18 8 4.4871 -7.8613 2.7327 19 6 3.5824 -9.9656 2.2638 20 6 2.6788 -10.7086 1.4972 21 6 2.6842 -12.0871 1.6271 22 6 3.5747 -12.6820 2.5180 23 6 3.5838 -14.1577 2.6680 24 7 4.4421 -14.7424 3.5271 25 8 2.8175 -14.8393 2.0167 26 7 4.4154 -11.9457 3.2337 27 6 4.4448 -10.6355 3.1355 28 6 2.5434 -6.3797 1.3249 29 1 -0.4849 0.8400 0.0040 30 1 0.3556 -2.3880 -0.0109 31 1 2.6841 -3.7102 -0.9082 32 1 2.6853 -3.7188 0.8717 33 1 0.4375 -4.7663 0.8675 34 1 0.4369 -4.7575 -0.9125 35 1 -0.0528 -7.1374 0.4867 36 1 0.6117 -7.6069 -1.1124 37 1 2.1366 -9.0986 -0.1743 38 1 1.0083 -9.0896 1.2099 39 1 1.9967 -10.2196 0.8175 40 1 2.0037 -12.6934 1.0478 41 1 5.0536 -14.1982 4.0474 42 1 4.4483 -15.7075 3.6250 43 1 5.1436 -10.0705 3.7344 44 1 3.5208 -5.8971 1.3268 45 1 1.9335 -6.0031 2.1461 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326444446.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:06:28 Heat of formation + Delta-G solvation = -5.534096 kcal Electronic energy + Delta-G solvation = -27044.652541 eV Core-core repulsion = 23062.988971 eV Total energy + Delta-G solvation = -3981.663570 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.47723 -40.27493 -39.07044 -37.93150 -35.36605 -34.45352 -33.61520 -32.59887 -31.98018 -31.07066 -29.77003 -27.51089 -26.21579 -24.38760 -24.03642 -23.25556 -21.68306 -21.28890 -20.58431 -20.17073 -18.69327 -17.97137 -17.48277 -17.14148 -16.63917 -16.29096 -16.02656 -15.60816 -15.33411 -15.19928 -14.70056 -14.63756 -14.29442 -14.10083 -13.82802 -13.63150 -13.48130 -13.26948 -13.07054 -12.82105 -12.73594 -12.16230 -11.76581 -11.35873 -11.14365 -11.00157 -10.85863 -10.73419 -10.62130 -10.54881 -10.47611 -10.39797 -10.24092 -10.02051 -9.99072 -9.79301 -9.68618 -8.96814 -8.87295 -6.92702 -5.77062 -3.05661 -0.26708 0.59724 1.92252 2.51790 2.65532 2.80403 3.35339 3.43997 3.49178 3.50715 3.59651 3.93084 4.11897 4.25877 4.27718 4.39411 4.43482 4.54506 4.62212 4.70889 4.86988 5.00434 5.14420 5.21549 5.33151 5.34678 5.44882 5.52707 5.58317 5.64301 5.72148 5.79193 5.84838 5.97051 6.01760 6.17793 6.19715 6.31000 6.33248 6.70560 6.80657 6.84431 7.06731 7.16200 7.66606 7.70366 7.74121 8.42163 9.53255 10.11103 10.45390 11.45909 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.034800 B = 0.001781 C = 0.001709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.407860 B =15714.740437 C =16377.512669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.282 1.282 6 H -0.291 1.291 7 C -0.240 4.240 8 H 0.070 0.930 9 N -0.734 5.734 10 C 0.151 3.849 11 C -0.115 4.115 12 C -0.094 4.094 13 H 0.087 0.913 14 C -0.131 4.131 15 C 0.085 3.915 16 N -0.609 5.609 17 C 0.573 3.427 18 O -0.525 6.525 19 C -0.154 4.154 20 C -0.084 4.084 21 C -0.116 4.116 22 C 0.089 3.911 23 C 0.577 3.423 24 N -0.833 5.833 25 O -0.533 6.533 26 N -0.463 5.463 27 C 0.158 3.842 28 C 0.109 3.891 29 H 0.255 0.745 30 H 0.383 0.617 31 H 0.018 0.982 32 H 0.019 0.981 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.179 0.821 40 H 0.156 0.844 41 H 0.413 0.587 42 H 0.406 0.594 43 H 0.179 0.821 44 H 0.086 0.914 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.828 -30.111 4.024 30.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.208 1.208 6 H -0.218 1.218 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.378 5.378 10 C 0.023 3.977 11 C -0.153 4.153 12 C -0.114 4.114 13 H 0.105 0.895 14 C -0.169 4.169 15 C -0.038 4.038 16 N -0.342 5.342 17 C 0.361 3.639 18 O -0.402 6.402 19 C -0.159 4.159 20 C -0.110 4.110 21 C -0.137 4.137 22 C -0.049 4.049 23 C 0.360 3.640 24 N -0.397 5.397 25 O -0.409 6.409 26 N -0.174 5.174 27 C -0.003 4.003 28 C -0.012 4.012 29 H 0.065 0.935 30 H 0.217 0.783 31 H 0.036 0.964 32 H 0.037 0.963 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.102 0.898 36 H 0.105 0.895 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.196 0.804 40 H 0.173 0.827 41 H 0.244 0.756 42 H 0.238 0.762 43 H 0.195 0.805 44 H 0.105 0.895 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.497 -30.433 4.453 31.245 hybrid contribution -0.108 1.217 -0.228 1.243 sum 5.389 -29.216 4.225 30.008 Atomic orbital electron populations 1.69655 1.05113 1.25645 1.57888 1.24744 0.95541 0.97719 1.03040 0.86183 0.78655 0.83784 0.77545 1.21705 1.20755 1.21758 1.19249 0.91075 0.84212 1.42567 0.91173 1.42353 1.05852 1.00073 1.89534 1.20682 0.93545 0.85590 0.97872 1.21688 0.98591 0.92352 1.02667 1.22361 0.97208 0.94992 0.96824 0.89468 1.22814 0.98488 0.93898 1.01668 1.22619 0.90299 0.96865 0.93996 1.48398 1.31325 1.08575 1.45928 1.17660 0.80968 0.86118 0.79125 1.90831 1.35174 1.67925 1.46292 1.21198 0.99535 0.94727 1.00471 1.23312 0.96622 0.93960 0.97067 1.22163 0.98658 0.95081 0.97790 1.21329 0.94298 0.94237 0.95026 1.17888 0.80342 0.86202 0.79544 1.43645 1.40057 1.11872 1.44081 1.90847 1.40219 1.63846 1.45946 1.67635 1.20512 1.07416 1.21815 1.22995 0.94810 0.88872 0.93630 1.22513 1.02255 0.78433 0.98038 0.93535 0.78329 0.96432 0.96280 0.91505 0.91153 0.89820 0.89460 0.90299 0.90321 0.80425 0.82655 0.75617 0.76221 0.80452 0.89523 0.90466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.20 13.06 55.49 0.72 -27.48 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.49 29.55 -169.99 -5.02 17.47 16 4 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 6 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 7 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.73 -18.42 5.60 -59.91 -0.34 -18.76 16 10 C 0.15 2.89 6.14 -4.04 -0.02 2.87 16 11 C -0.11 -1.61 4.84 -26.73 -0.13 -1.74 16 12 C -0.09 -1.00 3.04 -88.47 -0.27 -1.27 16 13 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 14 C -0.13 -0.96 6.42 -24.88 -0.16 -1.12 16 15 C 0.08 0.56 4.87 -3.04 -0.01 0.55 16 16 N -0.61 -6.25 3.33 -172.68 -0.57 -6.83 16 17 C 0.57 6.70 7.82 -12.25 -0.10 6.60 16 18 O -0.53 -7.99 16.62 5.33 0.09 -7.90 16 19 C -0.15 -1.41 5.89 -104.73 -0.62 -2.03 16 20 C -0.08 -0.59 8.70 -38.89 -0.34 -0.93 16 21 C -0.12 -0.86 9.62 -39.11 -0.38 -1.24 16 22 C 0.09 0.76 6.75 -82.94 -0.56 0.20 16 23 C 0.58 4.96 8.09 -12.10 -0.10 4.86 16 24 N -0.83 -4.30 8.86 30.64 0.27 -4.03 16 25 O -0.53 -6.12 17.15 5.37 0.09 -6.03 16 26 N -0.46 -3.94 9.52 -9.48 -0.09 -4.03 16 27 C 0.16 1.41 10.76 -17.17 -0.18 1.22 16 28 C 0.11 1.28 5.74 -2.53 -0.01 1.27 16 29 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 30 H 0.38 10.03 7.67 -40.82 -0.31 9.71 16 31 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.02 0.38 7.59 -51.93 -0.39 -0.02 16 33 H 0.07 0.95 8.03 -51.93 -0.42 0.54 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.08 0.61 8.04 -51.93 -0.42 0.19 16 36 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.08 0.39 6.75 -51.93 -0.35 0.04 16 38 H 0.08 0.40 6.74 -51.93 -0.35 0.05 16 39 H 0.18 0.85 2.89 -53.97 -0.16 0.69 16 40 H 0.16 0.97 7.63 -52.49 -0.40 0.56 16 41 H 0.41 1.61 8.15 -40.82 -0.33 1.28 16 42 H 0.41 1.37 8.93 -40.82 -0.36 1.00 16 43 H 0.18 1.46 7.67 -52.49 -0.40 1.06 16 44 H 0.09 1.17 7.95 -51.93 -0.41 0.76 16 45 H 0.08 0.95 7.95 -51.93 -0.41 0.54 16 LS Contribution 373.87 15.07 5.63 5.63 Total: -1.00 -35.71 373.87 -8.30 -44.01 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -5.96 Total: 6.10 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: -3.13 Total: 1.83 kcal Atomic # 7 Polarization: -61.11 SS G_CDS: 0.00 Total: -61.11 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: 0.18 Total: -13.92 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.71 -8.30 -44.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326444446.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.474 kcal (2) G-P(sol) polarization free energy of solvation -35.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds