Wall clock time and date at job start Sat Apr 11 2020 03:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86795 * 120.00202 * 2 1 4 4 H 1.48497 * 109.47436 * 89.99952 * 3 2 1 5 5 H 1.48503 * 109.47317 * 210.00236 * 3 2 1 6 6 H 1.48505 * 109.47076 * 329.99917 * 3 2 1 7 7 C 1.38820 * 119.99962 * 180.27485 * 2 1 3 8 8 H 1.07998 * 119.99892 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99715 * 359.97438 * 7 2 1 10 10 C 1.46498 * 119.99453 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47011 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47446 * 180.02562 * 11 10 9 13 13 H 1.08998 * 110.88645 * 305.70428 * 12 11 10 14 14 C 1.55154 * 111.00853 * 181.81781 * 12 11 10 15 15 C 1.54364 * 102.92462 * 206.45493 * 14 12 11 16 16 N 1.47021 * 107.28674 * 22.13699 * 15 14 12 17 17 C 1.34783 * 125.64527 * 181.05899 * 16 15 14 18 18 O 1.21537 * 119.99585 * 174.50653 * 17 16 15 19 19 C 1.48003 * 119.99993 * 354.50005 * 17 16 15 20 20 C 1.39863 * 120.46339 * 6.72561 * 19 17 16 21 21 C 1.38458 * 118.35523 * 179.75506 * 20 19 17 22 22 C 1.39302 * 119.18806 * 0.52183 * 21 20 19 23 23 C 1.48334 * 119.56810 * 179.74276 * 22 21 20 24 24 N 1.34780 * 119.99829 * 179.97438 * 23 22 21 25 25 O 1.21490 * 120.00545 * 359.97438 * 23 22 21 26 26 N 1.32711 * 120.86135 * 359.71735 * 22 21 20 27 27 C 1.31414 * 121.79965 * 0.02651 * 26 22 21 28 28 C 1.47421 * 108.70570 * 1.09593 * 16 15 14 29 29 H 0.96990 * 119.99993 * 359.72723 * 1 2 3 30 30 H 0.96993 * 119.99942 * 0.02562 * 9 7 2 31 31 H 1.08993 * 109.47638 * 300.00342 * 10 9 7 32 32 H 1.09001 * 109.47388 * 60.00672 * 10 9 7 33 33 H 1.09001 * 109.46809 * 300.00202 * 11 10 9 34 34 H 1.09001 * 109.47173 * 60.00284 * 11 10 9 35 35 H 1.08998 * 110.72042 * 324.79116 * 14 12 11 36 36 H 1.09003 * 110.71947 * 88.05974 * 14 12 11 37 37 H 1.09006 * 109.84670 * 262.73522 * 15 14 12 38 38 H 1.08998 * 109.90280 * 141.57583 * 15 14 12 39 39 H 1.07999 * 120.82267 * 0.02562 * 20 19 17 40 40 H 1.07998 * 120.40553 * 180.28092 * 21 20 19 41 41 H 0.96995 * 120.00111 * 0.02562 * 24 23 22 42 42 H 0.97005 * 119.99891 * 180.02562 * 24 23 22 43 43 H 1.07994 * 119.64344 * 180.02562 * 27 26 22 44 44 H 1.09001 * 110.36914 * 217.03147 * 28 16 15 45 45 H 1.09001 * 110.45798 * 94.75380 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 1.4000 5 1 3.5478 1.4401 -0.7001 6 1 1.4477 2.6526 -0.7001 7 6 2.0103 -1.2022 -0.0058 8 1 3.0903 -1.2022 -0.0053 9 7 1.3255 -2.3881 -0.0109 10 6 2.0581 -3.6567 -0.0176 11 6 1.0638 -4.8197 -0.0230 12 6 1.8288 -6.1447 -0.0293 13 1 2.5377 -6.1802 -0.8565 14 6 0.8531 -7.3500 -0.0809 15 6 1.6643 -8.4797 0.5887 16 7 2.6935 -7.8429 1.4234 17 6 3.6203 -8.4898 2.1577 18 8 4.4871 -7.8613 2.7327 19 6 3.5824 -9.9656 2.2638 20 6 2.6788 -10.7086 1.4972 21 6 2.6842 -12.0871 1.6271 22 6 3.5747 -12.6820 2.5180 23 6 3.5838 -14.1577 2.6680 24 7 4.4421 -14.7424 3.5271 25 8 2.8175 -14.8393 2.0167 26 7 4.4154 -11.9457 3.2337 27 6 4.4448 -10.6355 3.1355 28 6 2.5434 -6.3797 1.3249 29 1 -0.4849 0.8400 0.0040 30 1 0.3556 -2.3880 -0.0109 31 1 2.6841 -3.7102 -0.9082 32 1 2.6853 -3.7188 0.8717 33 1 0.4375 -4.7663 0.8675 34 1 0.4369 -4.7575 -0.9125 35 1 -0.0528 -7.1374 0.4867 36 1 0.6117 -7.6069 -1.1124 37 1 2.1366 -9.0986 -0.1743 38 1 1.0083 -9.0896 1.2099 39 1 1.9967 -10.2196 0.8175 40 1 2.0037 -12.6934 1.0478 41 1 5.0536 -14.1982 4.0474 42 1 4.4483 -15.7075 3.6250 43 1 5.1436 -10.0705 3.7344 44 1 3.5208 -5.8971 1.3268 45 1 1.9335 -6.0031 2.1461 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326444446.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:06:28 Heat of formation + Delta-G solvation = -33.323607 kcal Electronic energy + Delta-G solvation = -27045.857584 eV Core-core repulsion = 23062.988971 eV Total energy + Delta-G solvation = -3982.868614 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.17195 -41.02869 -39.76835 -38.85938 -36.91979 -35.22214 -34.67495 -33.64933 -32.79391 -32.36424 -30.83465 -28.74616 -27.07879 -25.75632 -24.69910 -24.48542 -22.87286 -22.11930 -21.42280 -21.09847 -19.28765 -19.14554 -18.66070 -18.18333 -17.40650 -17.03093 -16.81624 -16.66135 -16.33016 -16.09855 -15.97225 -15.40138 -15.30859 -15.23418 -15.03635 -14.65787 -14.51729 -14.43958 -14.15026 -13.73638 -13.59192 -13.28542 -12.98037 -12.81482 -12.78536 -12.29613 -12.14079 -11.95638 -11.69590 -11.67057 -11.57562 -11.44542 -11.33430 -11.15498 -10.92606 -10.80789 -10.70070 -10.45761 -9.78574 -8.99941 -7.96409 -5.24848 -0.93243 0.00652 1.21121 1.46821 1.48347 1.56835 1.71391 1.89222 2.23380 2.55417 2.69232 2.98951 3.22582 3.37264 3.49786 3.57434 3.65433 3.75495 3.80836 3.81721 4.03772 4.16249 4.23013 4.32837 4.46435 4.51608 4.58368 4.58933 4.72526 4.75185 4.79344 4.82271 4.91028 4.95318 5.08534 5.16161 5.27055 5.31641 5.40043 5.47759 5.50443 5.73055 6.16146 6.26981 6.31028 6.52078 6.88028 7.14073 7.33084 8.10052 8.32953 9.26976 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.034800 B = 0.001781 C = 0.001709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.407860 B =15714.740437 C =16377.512669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.074 4.074 3 Si 0.972 3.028 4 H -0.288 1.288 5 H -0.271 1.271 6 H -0.292 1.292 7 C -0.250 4.250 8 H 0.072 0.928 9 N -0.747 5.747 10 C 0.147 3.853 11 C -0.100 4.100 12 C -0.086 4.086 13 H 0.090 0.910 14 C -0.121 4.121 15 C 0.076 3.924 16 N -0.607 5.607 17 C 0.570 3.430 18 O -0.574 6.574 19 C -0.163 4.163 20 C -0.066 4.066 21 C -0.114 4.114 22 C 0.079 3.921 23 C 0.575 3.425 24 N -0.815 5.815 25 O -0.566 6.566 26 N -0.464 5.464 27 C 0.150 3.850 28 C 0.108 3.892 29 H 0.252 0.748 30 H 0.375 0.625 31 H 0.018 0.982 32 H 0.013 0.987 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.088 0.912 36 H 0.113 0.887 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.206 0.794 40 H 0.172 0.828 41 H 0.421 0.579 42 H 0.417 0.583 43 H 0.177 0.823 44 H 0.060 0.940 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.464 -31.967 3.176 32.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.266 4.266 3 Si 0.801 3.199 4 H -0.215 1.215 5 H -0.196 1.196 6 H -0.219 1.219 7 C -0.382 4.382 8 H 0.090 0.910 9 N -0.390 5.390 10 C 0.020 3.980 11 C -0.138 4.138 12 C -0.106 4.106 13 H 0.109 0.891 14 C -0.158 4.158 15 C -0.044 4.044 16 N -0.339 5.339 17 C 0.359 3.641 18 O -0.455 6.455 19 C -0.169 4.169 20 C -0.091 4.091 21 C -0.134 4.134 22 C -0.059 4.059 23 C 0.358 3.642 24 N -0.379 5.379 25 O -0.445 6.445 26 N -0.175 5.175 27 C -0.010 4.010 28 C -0.015 4.015 29 H 0.061 0.939 30 H 0.207 0.793 31 H 0.036 0.964 32 H 0.031 0.969 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.106 0.894 36 H 0.131 0.869 37 H 0.124 0.876 38 H 0.123 0.877 39 H 0.222 0.778 40 H 0.189 0.811 41 H 0.253 0.747 42 H 0.250 0.750 43 H 0.194 0.806 44 H 0.078 0.922 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.163 -32.344 3.610 32.951 hybrid contribution 0.055 1.729 0.070 1.732 sum 5.218 -30.614 3.680 31.273 Atomic orbital electron populations 1.69798 1.06483 1.26121 1.59391 1.25553 0.96453 1.01035 1.03609 0.85159 0.77730 0.79553 0.77441 1.21470 1.19593 1.21858 1.19640 0.91448 0.85646 1.41417 0.91023 1.42584 1.05707 1.01302 1.89417 1.20886 0.94505 0.85304 0.97272 1.21523 0.97514 0.92033 1.02749 1.22217 0.97779 0.94590 0.95989 0.89118 1.22821 0.97605 0.91914 1.03488 1.22980 0.89863 0.97053 0.94551 1.48450 1.31650 1.07992 1.45790 1.18043 0.80464 0.87053 0.78530 1.90801 1.37210 1.69062 1.48392 1.21020 1.00882 0.93195 1.01763 1.23536 0.95773 0.93567 0.96249 1.22377 0.98395 0.95305 0.97369 1.21522 0.94629 0.94357 0.95377 1.17960 0.80412 0.86195 0.79672 1.43562 1.38918 1.12629 1.42768 1.90831 1.41751 1.64395 1.47494 1.67627 1.20743 1.07090 1.22041 1.23035 0.95032 0.89092 0.93885 1.22375 1.00811 0.79673 0.98622 0.93926 0.79294 0.96448 0.96870 0.91768 0.90651 0.89366 0.86897 0.87554 0.87722 0.77841 0.81103 0.74728 0.75046 0.80640 0.92188 0.91408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.10 13.06 21.65 0.28 -58.81 16 2 C -0.07 -4.29 5.50 84.86 0.47 -3.82 16 3 Si 0.97 46.48 29.55 68.60 2.03 48.51 16 4 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 5 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 6 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 7 C -0.25 -14.17 9.99 84.04 0.84 -13.33 16 8 H 0.07 3.95 7.83 -2.91 -0.02 3.93 16 9 N -0.75 -37.98 5.60 -343.46 -1.92 -39.90 16 10 C 0.15 5.67 6.14 86.38 0.53 6.20 16 11 C -0.10 -2.72 4.84 30.59 0.15 -2.57 16 12 C -0.09 -1.67 3.04 -9.40 -0.03 -1.70 16 13 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 14 C -0.12 -1.32 6.42 31.80 0.20 -1.12 16 15 C 0.08 0.72 4.87 86.74 0.42 1.14 16 16 N -0.61 -11.56 3.33 -818.51 -2.72 -14.29 16 17 C 0.57 13.06 7.82 86.83 0.68 13.73 16 18 O -0.57 -18.13 16.62 -3.83 -0.06 -18.20 16 19 C -0.16 -2.77 5.89 -19.93 -0.12 -2.89 16 20 C -0.07 -0.72 8.70 22.72 0.20 -0.53 16 21 C -0.11 -1.38 9.62 22.58 0.22 -1.16 16 22 C 0.08 1.21 6.75 41.96 0.28 1.50 16 23 C 0.57 9.06 8.09 86.93 0.70 9.76 16 24 N -0.82 -7.23 8.86 -175.27 -1.55 -8.78 16 25 O -0.57 -12.28 17.15 -3.68 -0.06 -12.34 16 26 N -0.46 -7.39 9.52 -183.91 -1.75 -9.15 16 27 C 0.15 2.61 10.76 85.12 0.92 3.53 16 28 C 0.11 2.51 5.74 86.86 0.50 3.01 16 29 H 0.25 14.88 8.31 -92.72 -0.77 14.11 16 30 H 0.38 19.95 7.67 -92.71 -0.71 19.24 16 31 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.01 0.53 7.59 -2.39 -0.02 0.51 16 33 H 0.06 1.79 8.03 -2.39 -0.02 1.77 16 34 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.09 0.95 8.04 -2.39 -0.02 0.93 16 36 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.11 0.51 6.75 -2.38 -0.02 0.49 16 38 H 0.11 0.54 6.74 -2.39 -0.02 0.53 16 39 H 0.21 1.00 2.89 -4.30 -0.01 0.98 16 40 H 0.17 1.58 7.63 -2.91 -0.02 1.56 16 41 H 0.42 2.68 8.15 -92.71 -0.76 1.92 16 42 H 0.42 2.17 8.93 -92.70 -0.83 1.34 16 43 H 0.18 3.00 7.67 -2.91 -0.02 2.98 16 44 H 0.06 1.70 7.95 -2.39 -0.02 1.68 16 45 H 0.07 1.69 7.95 -2.39 -0.02 1.68 16 Total: -1.00 -79.09 373.87 -1.04 -80.13 By element: Atomic # 1 Polarization: 22.32 SS G_CDS: -1.23 Total: 21.09 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: 5.96 Total: 11.74 kcal Atomic # 7 Polarization: -123.26 SS G_CDS: -7.67 Total: -130.93 kcal Atomic # 8 Polarization: -30.41 SS G_CDS: -0.13 Total: -30.54 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.51 kcal Total: -79.09 -1.04 -80.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326444446.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.802 kcal (2) G-P(sol) polarization free energy of solvation -79.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds