Wall clock time and date at job start Sat Apr 11 2020 03:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 119.99820 * 2 1 4 4 H 1.48495 * 109.47206 * 270.00229 * 3 2 1 5 5 H 1.48498 * 109.46872 * 30.00567 * 3 2 1 6 6 H 1.48500 * 109.46775 * 150.00437 * 3 2 1 7 7 C 1.38811 * 120.00101 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00335 * 359.97438 * 7 2 1 9 9 N 1.36935 * 119.99958 * 179.97438 * 7 2 1 10 10 C 1.46502 * 120.00015 * 179.72353 * 9 7 2 11 11 C 1.53004 * 109.47317 * 180.27649 * 10 9 7 12 12 C 1.52998 * 109.47153 * 179.97438 * 11 10 9 13 13 H 1.09003 * 110.88545 * 57.42788 * 12 11 10 14 14 C 1.55154 * 111.00599 * 181.34954 * 12 11 10 15 15 C 1.54323 * 102.94400 * 153.57603 * 14 12 11 16 16 N 1.47019 * 107.27052 * 337.80942 * 15 14 12 17 17 C 1.34779 * 125.64759 * 178.90237 * 16 15 14 18 18 O 1.21531 * 119.99690 * 175.06773 * 17 16 15 19 19 C 1.48006 * 119.99932 * 355.07248 * 17 16 15 20 20 C 1.39868 * 120.45979 * 7.72666 * 19 17 16 21 21 C 1.38453 * 118.35160 * 179.97438 * 20 19 17 22 22 C 1.39301 * 119.19377 * 359.97438 * 21 20 19 23 23 C 1.48334 * 119.57446 * 179.97438 * 22 21 20 24 24 N 1.34773 * 120.00191 * 180.02562 * 23 22 21 25 25 O 1.21496 * 119.99998 * 0.02562 * 23 22 21 26 26 N 1.32722 * 120.85750 * 0.02562 * 22 21 20 27 27 C 1.31412 * 121.79723 * 359.72275 * 26 22 21 28 28 C 1.47426 * 108.70603 * 358.94072 * 16 15 14 29 29 H 0.97001 * 120.00455 * 359.97438 * 1 2 3 30 30 H 0.97005 * 120.00444 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.47126 * 300.27642 * 10 9 7 32 32 H 1.09006 * 109.47213 * 60.27724 * 10 9 7 33 33 H 1.09001 * 109.47018 * 300.00060 * 11 10 9 34 34 H 1.09000 * 109.46674 * 60.00253 * 11 10 9 35 35 H 1.08996 * 110.72284 * 271.94426 * 14 12 11 36 36 H 1.09010 * 110.71841 * 35.21409 * 14 12 11 37 37 H 1.09002 * 109.88042 * 218.39537 * 15 14 12 38 38 H 1.09000 * 110.00779 * 97.29780 * 15 14 12 39 39 H 1.07994 * 120.82496 * 359.95721 * 20 19 17 40 40 H 1.08004 * 120.40402 * 180.02562 * 21 20 19 41 41 H 0.96996 * 119.99971 * 359.97438 * 24 23 22 42 42 H 0.97002 * 119.99876 * 179.97438 * 24 23 22 43 43 H 1.08002 * 119.64241 * 180.26524 * 27 26 22 44 44 H 1.09004 * 110.36740 * 265.29387 * 28 16 15 45 45 H 1.08996 * 110.36781 * 142.96566 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4475 2.6526 0.7002 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1121 -2.4708 0.0045 11 6 5.6164 -2.1912 0.0096 12 6 6.3814 -3.5162 0.0160 13 1 6.1042 -4.1291 -0.8417 14 6 7.9134 -3.2737 0.0554 15 6 8.4492 -4.5561 0.7262 16 7 7.3390 -5.1468 1.4879 17 6 7.3955 -6.2897 2.2000 18 8 6.4403 -6.6388 2.8654 19 6 8.6207 -7.1194 2.1718 20 6 9.7794 -6.6518 1.5432 21 6 10.9009 -7.4638 1.5433 22 6 10.8382 -8.7088 2.1649 23 6 12.0345 -9.5858 2.1695 24 7 11.9833 -10.7924 2.7679 25 8 13.0606 -9.2165 1.6339 26 7 9.7216 -9.1211 2.7521 27 6 8.6379 -8.3783 2.7779 28 6 6.1535 -4.2825 1.3429 29 1 -0.4851 0.8400 0.0004 30 1 3.8646 -0.3620 -0.0007 31 1 3.8454 -3.0404 0.8947 32 1 3.8522 -3.0444 -0.8853 33 1 5.8831 -1.6216 -0.8807 34 1 5.8763 -1.6177 0.8993 35 1 8.3135 -3.1700 -0.9531 36 1 8.1495 -2.3961 0.6573 37 1 9.2695 -4.3073 1.3995 38 1 8.7929 -5.2585 -0.0331 39 1 9.7988 -5.6816 1.0694 40 1 11.8134 -7.1355 1.0680 41 1 11.1642 -11.0871 3.1958 42 1 12.7655 -11.3660 2.7706 43 1 7.7495 -8.7466 3.2694 44 1 6.0885 -3.5845 2.1776 45 1 5.2486 -4.8870 1.2813 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326444451.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:06:31 Heat of formation + Delta-G solvation = -1.325247 kcal Electronic energy + Delta-G solvation = -27121.118897 eV Core-core repulsion = 23139.637837 eV Total energy + Delta-G solvation = -3981.481060 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.50324 -40.30940 -39.09923 -37.98892 -35.54171 -34.48572 -33.66259 -32.62428 -32.00357 -31.25119 -30.03516 -27.75314 -26.30332 -24.44773 -24.07477 -23.10029 -21.65892 -21.25325 -20.65183 -20.24983 -18.71191 -17.98839 -17.61959 -17.48019 -16.70540 -16.31374 -16.17348 -15.64050 -15.36341 -15.20319 -14.67589 -14.60039 -14.35128 -14.22018 -13.89656 -13.80932 -13.62971 -13.29788 -12.95266 -12.84316 -12.73826 -12.32363 -11.92636 -11.61140 -11.37596 -11.01886 -10.95391 -10.84419 -10.65756 -10.57748 -10.55652 -10.39926 -10.25450 -10.12547 -10.02543 -9.81262 -9.59870 -9.01213 -8.90639 -7.24589 -5.77366 -3.13290 -0.28758 0.57568 1.90345 2.47927 2.63141 2.78681 3.33112 3.35659 3.37859 3.43923 3.57660 3.89729 4.07202 4.21694 4.23731 4.36526 4.39783 4.51127 4.57944 4.65390 4.79137 4.93308 5.11094 5.15235 5.27321 5.30508 5.31776 5.43475 5.52726 5.57646 5.60986 5.71897 5.76255 5.88511 5.89518 6.01500 6.05329 6.18232 6.18978 6.68527 6.69174 6.71816 7.03650 7.13495 7.65142 7.71211 7.99025 8.41479 9.20577 9.92725 10.12159 11.41045 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.034376 B = 0.001855 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.316783 B =15087.985459 C =15702.570725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.003 3.997 3 Si 0.886 3.114 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.245 4.245 8 H 0.090 0.910 9 N -0.757 5.757 10 C 0.154 3.846 11 C -0.119 4.119 12 C -0.094 4.094 13 H 0.089 0.911 14 C -0.131 4.131 15 C 0.085 3.915 16 N -0.609 5.609 17 C 0.573 3.427 18 O -0.523 6.523 19 C -0.154 4.154 20 C -0.084 4.084 21 C -0.116 4.116 22 C 0.090 3.910 23 C 0.577 3.423 24 N -0.833 5.833 25 O -0.533 6.533 26 N -0.462 5.462 27 C 0.158 3.842 28 C 0.110 3.890 29 H 0.259 0.741 30 H 0.360 0.640 31 H 0.028 0.972 32 H 0.027 0.973 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.178 0.822 40 H 0.156 0.844 41 H 0.413 0.587 42 H 0.407 0.593 43 H 0.179 0.821 44 H 0.077 0.923 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.558 -17.779 3.272 32.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.192 4.192 3 Si 0.717 3.283 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.375 4.375 8 H 0.108 0.892 9 N -0.403 5.403 10 C 0.027 3.973 11 C -0.157 4.157 12 C -0.114 4.114 13 H 0.107 0.893 14 C -0.169 4.169 15 C -0.038 4.038 16 N -0.343 5.343 17 C 0.361 3.639 18 O -0.400 6.400 19 C -0.159 4.159 20 C -0.109 4.109 21 C -0.137 4.137 22 C -0.049 4.049 23 C 0.360 3.640 24 N -0.396 5.396 25 O -0.409 6.409 26 N -0.173 5.173 27 C -0.003 4.003 28 C -0.012 4.012 29 H 0.069 0.931 30 H 0.193 0.807 31 H 0.046 0.954 32 H 0.045 0.955 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.106 0.894 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.195 0.805 40 H 0.173 0.827 41 H 0.244 0.756 42 H 0.238 0.762 43 H 0.196 0.804 44 H 0.095 0.905 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 27.402 -18.575 3.684 33.309 hybrid contribution 0.442 1.637 -0.153 1.703 sum 27.844 -16.937 3.532 32.782 Atomic orbital electron populations 1.69702 1.05113 1.25821 1.57549 1.24690 0.95259 0.97243 1.02051 0.86520 0.79166 0.84945 0.77716 1.21102 1.21728 1.20377 1.19074 0.80668 0.94777 1.43012 0.89222 1.42708 1.04090 1.02243 1.91232 1.20671 0.88466 0.89406 0.98749 1.21740 0.96351 0.95083 1.02546 1.22348 0.94159 0.97546 0.97334 0.89278 1.22805 0.95894 0.96494 1.01675 1.22612 0.90057 0.95848 0.95240 1.48396 1.13992 1.22774 1.49121 1.17661 0.86868 0.79800 0.79556 1.90838 1.37485 1.70869 1.40837 1.21192 0.95212 0.97536 1.01999 1.23278 0.91169 1.01793 0.94689 1.22157 1.00094 0.93335 0.98124 1.21335 0.92842 0.93936 0.96743 1.17885 0.86323 0.81678 0.78096 1.43643 1.19097 1.18464 1.58426 1.90848 1.31024 1.73884 1.45123 1.67643 0.98956 1.34816 1.15924 1.23002 0.95898 0.88692 0.92678 1.22505 0.88001 0.92805 0.97869 0.93056 0.80721 0.95441 0.95520 0.91181 0.91553 0.89447 0.89893 0.90341 0.90267 0.80515 0.82665 0.75604 0.76209 0.80422 0.90470 0.89475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.42 13.97 55.49 0.78 -28.65 16 2 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 3 Si 0.89 21.91 27.74 -169.99 -4.71 17.20 16 4 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.28 -6.40 6.52 56.52 0.37 -6.03 16 7 C -0.25 -6.97 10.47 -15.06 -0.16 -7.13 16 8 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 9 N -0.76 -17.69 5.41 -59.90 -0.32 -18.02 16 10 C 0.15 2.80 6.11 -4.04 -0.02 2.77 16 11 C -0.12 -1.53 4.85 -26.73 -0.13 -1.66 16 12 C -0.09 -0.92 3.07 -88.47 -0.27 -1.19 16 13 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 14 C -0.13 -0.87 6.42 -24.90 -0.16 -1.03 16 15 C 0.08 0.52 4.88 -3.07 -0.01 0.51 16 16 N -0.61 -6.00 3.33 -172.37 -0.57 -6.58 16 17 C 0.57 6.54 7.82 -12.26 -0.10 6.44 16 18 O -0.52 -7.86 16.69 5.34 0.09 -7.77 16 19 C -0.15 -1.37 5.89 -104.73 -0.62 -1.99 16 20 C -0.08 -0.56 8.68 -38.89 -0.34 -0.90 16 21 C -0.12 -0.83 9.62 -39.11 -0.38 -1.21 16 22 C 0.09 0.75 6.75 -82.93 -0.56 0.19 16 23 C 0.58 4.87 8.09 -12.11 -0.10 4.77 16 24 N -0.83 -4.19 8.86 30.64 0.27 -3.92 16 25 O -0.53 -6.03 17.15 5.37 0.09 -5.94 16 26 N -0.46 -3.86 9.52 -9.48 -0.09 -3.95 16 27 C 0.16 1.38 10.76 -17.17 -0.18 1.20 16 28 C 0.11 1.23 5.55 -2.53 -0.01 1.22 16 29 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 30 H 0.36 8.12 5.53 -40.82 -0.23 7.89 16 31 H 0.03 0.52 7.46 -51.93 -0.39 0.13 16 32 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 35 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.54 8.04 -51.92 -0.42 0.12 16 37 H 0.08 0.35 6.79 -51.93 -0.35 0.00 16 38 H 0.08 0.37 6.67 -51.93 -0.35 0.02 16 39 H 0.18 0.78 2.92 -53.53 -0.16 0.62 16 40 H 0.16 0.93 7.63 -52.48 -0.40 0.53 16 41 H 0.41 1.57 8.15 -40.82 -0.33 1.23 16 42 H 0.41 1.32 8.93 -40.82 -0.36 0.96 16 43 H 0.18 1.44 7.67 -52.49 -0.40 1.03 16 44 H 0.08 0.92 8.00 -51.93 -0.42 0.50 16 45 H 0.09 1.13 8.01 -51.93 -0.42 0.71 16 LS Contribution 370.69 15.07 5.59 5.59 Total: -1.00 -36.68 370.69 -7.95 -44.62 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -5.92 Total: 5.43 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: -3.14 Total: 1.99 kcal Atomic # 7 Polarization: -61.17 SS G_CDS: 0.06 Total: -61.11 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: 0.18 Total: -13.72 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.71 Total: 17.20 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.68 -7.95 -44.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326444451.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.300 kcal (2) G-P(sol) polarization free energy of solvation -36.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds