Wall clock time and date at job start Sat Apr 11 2020 03:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 119.99820 * 2 1 4 4 H 1.48495 * 109.47206 * 270.00229 * 3 2 1 5 5 H 1.48498 * 109.46872 * 30.00567 * 3 2 1 6 6 H 1.48500 * 109.46775 * 150.00437 * 3 2 1 7 7 C 1.38811 * 120.00101 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00335 * 359.97438 * 7 2 1 9 9 N 1.36935 * 119.99958 * 179.97438 * 7 2 1 10 10 C 1.46502 * 120.00015 * 179.72353 * 9 7 2 11 11 C 1.53004 * 109.47317 * 180.27649 * 10 9 7 12 12 C 1.52998 * 109.47153 * 179.97438 * 11 10 9 13 13 H 1.09003 * 110.88545 * 57.42788 * 12 11 10 14 14 C 1.55154 * 111.00599 * 181.34954 * 12 11 10 15 15 C 1.54323 * 102.94400 * 153.57603 * 14 12 11 16 16 N 1.47019 * 107.27052 * 337.80942 * 15 14 12 17 17 C 1.34779 * 125.64759 * 178.90237 * 16 15 14 18 18 O 1.21531 * 119.99690 * 175.06773 * 17 16 15 19 19 C 1.48006 * 119.99932 * 355.07248 * 17 16 15 20 20 C 1.39868 * 120.45979 * 7.72666 * 19 17 16 21 21 C 1.38453 * 118.35160 * 179.97438 * 20 19 17 22 22 C 1.39301 * 119.19377 * 359.97438 * 21 20 19 23 23 C 1.48334 * 119.57446 * 179.97438 * 22 21 20 24 24 N 1.34773 * 120.00191 * 180.02562 * 23 22 21 25 25 O 1.21496 * 119.99998 * 0.02562 * 23 22 21 26 26 N 1.32722 * 120.85750 * 0.02562 * 22 21 20 27 27 C 1.31412 * 121.79723 * 359.72275 * 26 22 21 28 28 C 1.47426 * 108.70603 * 358.94072 * 16 15 14 29 29 H 0.97001 * 120.00455 * 359.97438 * 1 2 3 30 30 H 0.97005 * 120.00444 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.47126 * 300.27642 * 10 9 7 32 32 H 1.09006 * 109.47213 * 60.27724 * 10 9 7 33 33 H 1.09001 * 109.47018 * 300.00060 * 11 10 9 34 34 H 1.09000 * 109.46674 * 60.00253 * 11 10 9 35 35 H 1.08996 * 110.72284 * 271.94426 * 14 12 11 36 36 H 1.09010 * 110.71841 * 35.21409 * 14 12 11 37 37 H 1.09002 * 109.88042 * 218.39537 * 15 14 12 38 38 H 1.09000 * 110.00779 * 97.29780 * 15 14 12 39 39 H 1.07994 * 120.82496 * 359.95721 * 20 19 17 40 40 H 1.08004 * 120.40402 * 180.02562 * 21 20 19 41 41 H 0.96996 * 119.99971 * 359.97438 * 24 23 22 42 42 H 0.97002 * 119.99876 * 179.97438 * 24 23 22 43 43 H 1.08002 * 119.64241 * 180.26524 * 27 26 22 44 44 H 1.09004 * 110.36740 * 265.29387 * 28 16 15 45 45 H 1.08996 * 110.36781 * 142.96566 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4475 2.6526 0.7002 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1121 -2.4708 0.0045 11 6 5.6164 -2.1912 0.0096 12 6 6.3814 -3.5162 0.0160 13 1 6.1042 -4.1291 -0.8417 14 6 7.9134 -3.2737 0.0554 15 6 8.4492 -4.5561 0.7262 16 7 7.3390 -5.1468 1.4879 17 6 7.3955 -6.2897 2.2000 18 8 6.4403 -6.6388 2.8654 19 6 8.6207 -7.1194 2.1718 20 6 9.7794 -6.6518 1.5432 21 6 10.9009 -7.4638 1.5433 22 6 10.8382 -8.7088 2.1649 23 6 12.0345 -9.5858 2.1695 24 7 11.9833 -10.7924 2.7679 25 8 13.0606 -9.2165 1.6339 26 7 9.7216 -9.1211 2.7521 27 6 8.6379 -8.3783 2.7779 28 6 6.1535 -4.2825 1.3429 29 1 -0.4851 0.8400 0.0004 30 1 3.8646 -0.3620 -0.0007 31 1 3.8454 -3.0404 0.8947 32 1 3.8522 -3.0444 -0.8853 33 1 5.8831 -1.6216 -0.8807 34 1 5.8763 -1.6177 0.8993 35 1 8.3135 -3.1700 -0.9531 36 1 8.1495 -2.3961 0.6573 37 1 9.2695 -4.3073 1.3995 38 1 8.7929 -5.2585 -0.0331 39 1 9.7988 -5.6816 1.0694 40 1 11.8134 -7.1355 1.0680 41 1 11.1642 -11.0871 3.1958 42 1 12.7655 -11.3660 2.7706 43 1 7.7495 -8.7466 3.2694 44 1 6.0885 -3.5845 2.1776 45 1 5.2486 -4.8870 1.2813 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326444451.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:06:30 Heat of formation + Delta-G solvation = -30.781667 kcal Electronic energy + Delta-G solvation = -27122.396223 eV Core-core repulsion = 23139.637837 eV Total energy + Delta-G solvation = -3982.758387 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.17510 -41.03229 -39.77361 -38.88093 -37.06649 -35.22904 -34.68141 -33.72445 -32.92582 -32.50738 -30.99947 -28.90614 -27.11656 -25.64029 -24.70432 -24.32022 -22.89368 -22.12852 -21.44163 -21.11707 -19.63090 -19.27584 -18.66025 -18.18425 -17.42607 -17.02411 -16.93132 -16.56787 -16.33135 -16.09145 -15.98894 -15.72737 -15.29968 -15.20510 -14.82759 -14.64741 -14.55150 -14.41505 -14.21951 -13.89102 -13.65680 -13.55420 -13.05964 -12.88492 -12.80967 -12.29030 -12.10850 -11.85623 -11.73812 -11.69384 -11.56368 -11.45541 -11.36489 -11.16090 -10.95831 -10.81022 -10.70430 -10.46162 -9.78959 -9.29938 -8.03056 -5.37436 -0.93440 0.00337 1.20897 1.38192 1.43597 1.51037 1.71181 1.89021 2.23216 2.49279 2.68832 2.98687 3.21730 3.28105 3.45485 3.56375 3.64328 3.67976 3.76726 3.81103 4.00399 4.05274 4.22188 4.31323 4.42750 4.50236 4.56237 4.58137 4.70820 4.72899 4.77451 4.81490 4.89756 4.95908 5.07366 5.16444 5.25447 5.30951 5.37217 5.47713 5.72744 5.75098 6.15875 6.20884 6.30669 6.51819 6.88073 7.08302 7.13747 7.84069 8.04494 9.18634 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.034376 B = 0.001855 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.316783 B =15087.985459 C =15702.570725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.068 4.068 3 Si 0.963 3.037 4 H -0.275 1.275 5 H -0.297 1.297 6 H -0.246 1.246 7 C -0.242 4.242 8 H 0.050 0.950 9 N -0.759 5.759 10 C 0.147 3.853 11 C -0.105 4.105 12 C -0.087 4.087 13 H 0.091 0.909 14 C -0.119 4.119 15 C 0.075 3.925 16 N -0.607 5.607 17 C 0.569 3.431 18 O -0.575 6.575 19 C -0.163 4.163 20 C -0.065 4.065 21 C -0.114 4.114 22 C 0.079 3.921 23 C 0.575 3.425 24 N -0.815 5.815 25 O -0.566 6.566 26 N -0.464 5.464 27 C 0.150 3.850 28 C 0.106 3.894 29 H 0.258 0.742 30 H 0.368 0.632 31 H 0.015 0.985 32 H 0.021 0.979 33 H 0.084 0.916 34 H 0.071 0.929 35 H 0.114 0.886 36 H 0.091 0.909 37 H 0.106 0.894 38 H 0.104 0.896 39 H 0.206 0.794 40 H 0.172 0.828 41 H 0.421 0.579 42 H 0.417 0.583 43 H 0.176 0.824 44 H 0.068 0.932 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.659 -16.651 2.408 35.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.260 4.260 3 Si 0.789 3.211 4 H -0.200 1.200 5 H -0.224 1.224 6 H -0.171 1.171 7 C -0.373 4.373 8 H 0.068 0.932 9 N -0.405 5.405 10 C 0.022 3.978 11 C -0.143 4.143 12 C -0.107 4.107 13 H 0.109 0.891 14 C -0.157 4.157 15 C -0.046 4.046 16 N -0.339 5.339 17 C 0.358 3.642 18 O -0.455 6.455 19 C -0.169 4.169 20 C -0.090 4.090 21 C -0.134 4.134 22 C -0.059 4.059 23 C 0.358 3.642 24 N -0.379 5.379 25 O -0.445 6.445 26 N -0.175 5.175 27 C -0.011 4.011 28 C -0.016 4.016 29 H 0.067 0.933 30 H 0.202 0.798 31 H 0.033 0.967 32 H 0.039 0.961 33 H 0.103 0.897 34 H 0.090 0.910 35 H 0.132 0.868 36 H 0.110 0.890 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.222 0.778 40 H 0.189 0.811 41 H 0.253 0.747 42 H 0.250 0.750 43 H 0.193 0.807 44 H 0.086 0.914 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 31.573 -17.494 2.816 36.205 hybrid contribution -0.893 1.129 0.133 1.445 sum 30.681 -16.365 2.949 34.897 Atomic orbital electron populations 1.69909 1.07380 1.26829 1.59515 1.25637 0.96240 1.01736 1.02351 0.85291 0.78693 0.78779 0.78291 1.20044 1.22395 1.17054 1.19053 0.83078 0.93374 1.41766 0.93228 1.42708 1.02355 1.04441 1.90996 1.20889 0.92002 0.87204 0.97752 1.21605 0.92175 0.96991 1.03493 1.22230 0.96681 0.95588 0.96181 0.89082 1.22815 0.92469 0.96865 1.03513 1.22994 0.89421 0.96138 0.96048 1.48460 1.14612 1.22099 1.48725 1.18052 0.87034 0.80133 0.78979 1.90807 1.39402 1.72171 1.43169 1.21019 0.95019 0.97365 1.03449 1.23518 0.89716 1.02482 0.93309 1.22379 1.00742 0.92754 0.97546 1.21530 0.92727 0.94668 0.96995 1.17961 0.85906 0.82325 0.78048 1.43563 1.19845 1.17533 1.56945 1.90832 1.32023 1.74730 1.46880 1.67629 0.98897 1.34792 1.16206 1.23028 0.96058 0.89059 0.92977 1.22401 0.87860 0.92642 0.98714 0.93312 0.79820 0.96664 0.96077 0.89694 0.90994 0.86766 0.89037 0.87607 0.87818 0.77783 0.81057 0.74739 0.75046 0.80743 0.91373 0.92475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -64.02 13.97 21.65 0.30 -63.72 16 2 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 3 Si 0.96 44.86 27.74 68.60 1.90 46.76 16 4 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 5 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 6 H -0.25 -10.09 6.52 99.48 0.65 -9.44 16 7 C -0.24 -14.05 10.47 84.03 0.88 -13.17 16 8 H 0.05 3.20 8.06 -2.91 -0.02 3.18 16 9 N -0.76 -35.01 5.41 -343.44 -1.86 -36.87 16 10 C 0.15 5.32 6.11 86.38 0.53 5.85 16 11 C -0.10 -2.42 4.85 30.59 0.15 -2.28 16 12 C -0.09 -1.49 3.07 -9.40 -0.03 -1.52 16 13 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 14 C -0.12 -1.01 6.42 31.78 0.20 -0.80 16 15 C 0.07 0.60 4.88 86.73 0.42 1.02 16 16 N -0.61 -11.00 3.33 -817.53 -2.72 -13.72 16 17 C 0.57 12.80 7.82 86.83 0.68 13.48 16 18 O -0.57 -18.16 16.69 -3.81 -0.06 -18.22 16 19 C -0.16 -2.70 5.89 -19.93 -0.12 -2.82 16 20 C -0.07 -0.67 8.68 22.72 0.20 -0.47 16 21 C -0.11 -1.32 9.62 22.58 0.22 -1.10 16 22 C 0.08 1.18 6.75 41.95 0.28 1.47 16 23 C 0.57 8.89 8.09 86.93 0.70 9.59 16 24 N -0.82 -7.09 8.86 -175.27 -1.55 -8.64 16 25 O -0.57 -12.07 17.15 -3.70 -0.06 -12.13 16 26 N -0.46 -7.32 9.52 -183.90 -1.75 -9.07 16 27 C 0.15 2.58 10.76 85.12 0.92 3.49 16 28 C 0.11 2.35 5.55 86.86 0.48 2.83 16 29 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 30 H 0.37 15.70 5.53 -92.70 -0.51 15.19 16 31 H 0.02 0.59 7.46 -2.39 -0.02 0.57 16 32 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 33 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.07 1.62 8.10 -2.39 -0.02 1.60 16 35 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.09 0.70 8.04 -2.38 -0.02 0.68 16 37 H 0.11 0.37 6.79 -2.39 -0.02 0.35 16 38 H 0.10 0.41 6.67 -2.39 -0.02 0.39 16 39 H 0.21 0.80 2.92 -3.89 -0.01 0.79 16 40 H 0.17 1.48 7.63 -2.91 -0.02 1.45 16 41 H 0.42 2.63 8.15 -92.71 -0.76 1.87 16 42 H 0.42 2.10 8.93 -92.71 -0.83 1.27 16 43 H 0.18 3.00 7.67 -2.91 -0.02 2.98 16 44 H 0.07 1.61 8.00 -2.38 -0.02 1.59 16 45 H 0.06 1.58 8.01 -2.39 -0.02 1.56 16 Total: -1.00 -84.04 370.69 -0.91 -84.95 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: -1.09 Total: 18.69 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: 5.98 Total: 11.96 kcal Atomic # 7 Polarization: -124.43 SS G_CDS: -7.58 Total: -132.01 kcal Atomic # 8 Polarization: -30.22 SS G_CDS: -0.13 Total: -30.35 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.90 Total: 46.76 kcal Total: -84.04 -0.91 -84.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326444451.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.166 kcal (2) G-P(sol) polarization free energy of solvation -84.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds