Wall clock time and date at job start Sat Apr 11 2020 03:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86805 * 119.99794 * 2 1 4 4 H 1.48493 * 109.47070 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47159 * 300.00267 * 3 2 1 6 6 H 1.48499 * 109.47002 * 60.00269 * 3 2 1 7 7 C 1.38948 * 120.00223 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99924 * 179.97438 * 7 2 1 9 9 N 1.37093 * 120.00052 * 0.02562 * 7 2 1 10 10 C 1.34775 * 120.00265 * 180.02562 * 9 7 2 11 11 O 1.21287 * 119.99819 * 359.97438 * 10 9 7 12 12 C 1.50699 * 120.00127 * 179.97438 * 10 9 7 13 13 N 1.46904 * 109.47077 * 179.97438 * 12 10 9 14 14 C 1.46898 * 110.99867 * 177.75100 * 13 12 10 15 15 C 1.53002 * 112.84940 * 294.50732 * 14 13 12 16 16 N 1.46503 * 109.46973 * 292.58392 * 15 14 13 17 17 C 1.34773 * 120.00591 * 176.03128 * 16 15 14 18 18 O 1.21557 * 119.99436 * 0.02562 * 17 16 15 19 19 C 1.47839 * 120.00703 * 179.97438 * 17 16 15 20 20 C 1.40023 * 120.56184 * 179.97438 * 19 17 16 21 21 C 1.38355 * 118.28822 * 180.25358 * 20 19 17 22 22 C 1.38353 * 119.30017 * 359.46040 * 21 20 19 23 23 N 1.31926 * 121.08238 * 0.55662 * 22 21 20 24 24 C 1.31694 * 121.87720 * 359.71935 * 23 22 21 25 25 C 1.53783 * 113.69577 * 65.77145 * 14 13 12 26 26 C 1.53788 * 87.07869 * 89.12734 * 25 14 13 27 27 C 1.53776 * 113.61623 * 163.31163 * 14 13 12 28 28 H 0.96999 * 120.00039 * 359.97438 * 1 2 3 29 29 H 0.97003 * 119.99841 * 359.97438 * 9 7 2 30 30 H 1.09000 * 109.47019 * 59.99731 * 12 10 9 31 31 H 1.09005 * 109.46998 * 299.99621 * 12 10 9 32 32 H 1.00896 * 110.99899 * 301.69917 * 13 12 10 33 33 H 1.09001 * 109.47435 * 172.59035 * 15 14 13 34 34 H 1.08998 * 109.47704 * 52.58376 * 15 14 13 35 35 H 0.97006 * 120.00104 * 356.03264 * 16 15 14 36 36 H 1.07997 * 120.85110 * 359.97438 * 20 19 17 37 37 H 1.08002 * 120.34859 * 179.72799 * 21 20 19 38 38 H 1.08005 * 119.45552 * 180.27518 * 22 21 20 39 39 H 1.08002 * 119.71480 * 179.97438 * 24 23 22 40 40 H 1.08993 * 113.61768 * 203.67558 * 25 14 13 41 41 H 1.08999 * 113.61103 * 334.57943 * 25 14 13 42 42 H 1.09001 * 113.61242 * 270.88428 * 26 25 14 43 43 H 1.08997 * 113.61143 * 139.98362 * 26 25 14 44 44 H 1.09006 * 113.61533 * 25.34448 * 27 14 13 45 45 H 1.09001 * 113.61697 * 156.24585 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3465 0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8894 2.3964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2032 -0.0010 9 7 1.3235 -2.3906 -0.0016 10 6 1.9974 -3.5578 -0.0016 11 8 3.2103 -3.5577 -0.0011 12 6 1.2440 -4.8629 -0.0022 13 7 2.1986 -5.9794 -0.0027 14 6 1.4991 -7.2701 0.0506 15 6 0.7405 -7.4810 1.3624 16 7 1.6973 -7.6136 2.4639 17 6 1.2541 -7.7277 3.7316 18 8 0.0603 -7.7210 3.9609 19 6 2.2195 -7.8620 4.8431 20 6 1.7719 -7.9807 6.1645 21 6 2.7164 -8.0985 7.1686 22 6 4.0596 -8.1065 6.8372 23 7 4.4523 -7.9929 5.5829 24 6 3.5921 -7.8729 4.5929 25 6 0.6587 -7.5697 -1.2020 26 6 1.9200 -8.2176 -1.7971 27 6 2.3799 -8.4651 -0.3507 28 1 -0.4850 0.8400 0.0004 29 1 0.3535 -2.3906 -0.0016 30 1 0.6176 -4.9204 -0.8924 31 1 0.6170 -4.9208 0.8876 32 1 2.8098 -5.9322 -0.8041 33 1 0.1391 -8.3874 1.2927 34 1 0.0897 -6.6265 1.5473 35 1 2.6499 -7.6192 2.2809 36 1 0.7167 -7.9759 6.3943 37 1 2.4082 -8.1876 8.1999 38 1 4.7989 -8.2028 7.6186 39 1 3.9522 -7.7817 3.5788 40 1 -0.1527 -8.2756 -1.0248 41 1 0.3344 -6.6755 -1.7343 42 1 2.5537 -7.5187 -2.3433 43 1 1.7194 -9.1327 -2.3542 44 1 3.4452 -8.2939 -0.1958 45 1 2.0390 -9.4159 0.0592 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326772768.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:06:33 Heat of formation + Delta-G solvation = -9.778889 kcal Electronic energy + Delta-G solvation = -28013.577674 eV Core-core repulsion = 24031.730036 eV Total energy + Delta-G solvation = -3981.847638 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.83476 -40.13301 -38.79893 -37.97378 -34.59704 -34.08041 -33.03315 -32.74813 -31.77916 -31.20140 -28.23853 -26.71818 -25.83182 -24.65129 -24.04005 -23.69242 -22.29889 -20.75473 -19.28432 -19.03403 -18.15636 -17.89939 -17.03592 -16.74184 -16.40122 -15.87841 -15.49053 -15.36739 -15.01632 -14.96866 -14.51507 -14.27218 -14.12621 -13.97735 -13.68538 -13.40360 -13.34892 -13.17100 -12.67137 -12.51216 -12.44849 -12.35580 -11.98417 -11.54598 -11.46871 -11.08979 -10.86400 -10.81119 -10.35645 -10.34779 -10.28948 -10.22135 -10.18121 -9.65010 -9.52823 -9.50884 -9.07445 -8.51295 -8.13251 -7.97133 -6.42391 -3.83336 0.41681 0.95138 2.74021 3.00201 3.15869 3.26576 3.33674 3.64969 3.88418 3.95056 4.04989 4.23848 4.36812 4.44243 4.51243 4.57648 4.59826 4.66539 4.69821 4.80241 5.08469 5.12350 5.22018 5.26516 5.33548 5.48130 5.51142 5.54616 5.63611 5.68272 5.75392 5.77362 5.82355 5.94011 5.95548 6.02355 6.10356 6.26005 6.27175 6.35267 7.12811 7.41118 7.54626 7.54984 7.59322 8.05230 8.09364 8.59833 9.17014 9.53194 10.04134 10.75320 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.009031 B = 0.003182 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3099.775234 B = 8797.663721 C =10723.277614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.022 3.978 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.299 4.299 8 H 0.104 0.896 9 N -0.563 5.563 10 C 0.441 3.559 11 O -0.583 6.583 12 C 0.048 3.952 13 N -0.639 5.639 14 C 0.079 3.921 15 C 0.142 3.858 16 N -0.705 5.705 17 C 0.561 3.439 18 O -0.541 6.541 19 C -0.184 4.184 20 C -0.018 4.018 21 C -0.182 4.182 22 C 0.119 3.881 23 N -0.487 5.487 24 C 0.138 3.862 25 C -0.168 4.168 26 C -0.141 4.141 27 C -0.132 4.132 28 H 0.271 0.729 29 H 0.392 0.608 30 H 0.047 0.953 31 H 0.087 0.913 32 H 0.354 0.646 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.406 0.594 36 H 0.147 0.853 37 H 0.142 0.858 38 H 0.160 0.840 39 H 0.161 0.839 40 H 0.086 0.914 41 H 0.073 0.927 42 H 0.082 0.918 43 H 0.069 0.931 44 H 0.078 0.922 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.593 -20.381 6.148 21.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.179 4.179 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.199 5.199 10 C 0.227 3.773 11 O -0.467 6.467 12 C -0.084 4.084 13 N -0.271 5.271 14 C -0.014 4.014 15 C 0.018 3.982 16 N -0.356 5.356 17 C 0.347 3.653 18 O -0.419 6.419 19 C -0.189 4.189 20 C -0.045 4.045 21 C -0.201 4.201 22 C -0.038 4.038 23 N -0.195 5.195 24 C -0.020 4.020 25 C -0.208 4.208 26 C -0.179 4.179 27 C -0.170 4.170 28 H 0.081 0.919 29 H 0.225 0.775 30 H 0.065 0.935 31 H 0.105 0.895 32 H 0.175 0.825 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.242 0.758 36 H 0.165 0.835 37 H 0.160 0.840 38 H 0.178 0.822 39 H 0.178 0.822 40 H 0.105 0.895 41 H 0.092 0.908 42 H 0.100 0.900 43 H 0.088 0.912 44 H 0.097 0.903 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.440 -20.157 6.776 21.405 hybrid contribution -1.139 0.982 -0.799 1.703 sum 1.301 -19.175 5.977 20.127 Atomic orbital electron populations 1.69623 1.05942 1.28078 1.50559 1.25268 0.95630 0.99738 0.97302 0.85806 0.79719 0.81148 0.77718 1.19202 1.20755 1.20729 1.19744 0.93380 0.82199 1.47543 0.87866 1.41862 1.09210 1.04616 1.64249 1.19742 0.88353 0.84633 0.84591 1.90522 1.13679 1.87060 1.55476 1.21699 0.94551 0.90744 1.01445 1.60010 1.19207 0.98518 1.49361 1.22376 0.94766 0.91256 0.92959 1.21315 0.91018 1.01862 0.83975 1.45672 1.11113 1.73284 1.05537 1.18013 0.87874 0.76769 0.82612 1.90778 1.16207 1.50720 1.84222 1.21035 0.95212 1.07450 0.95195 1.21753 1.01309 0.90489 0.90917 1.22174 0.94201 1.02981 1.00775 1.23030 0.94757 0.92363 0.93646 1.67726 1.38941 1.12396 1.00429 1.23056 0.88290 0.91695 0.98961 1.23621 0.97699 1.01651 0.97863 1.22814 0.97529 1.01076 0.96458 1.23064 1.00508 0.97245 0.96169 0.91903 0.77485 0.93460 0.89523 0.82543 0.90999 0.90805 0.75800 0.83528 0.84019 0.82232 0.82218 0.89511 0.90819 0.89966 0.91189 0.90339 0.89378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.65 13.05 55.50 0.72 -23.93 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.15 29.55 -169.99 -5.02 16.12 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 7 C -0.30 -8.36 9.68 -14.94 -0.14 -8.50 16 8 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 9 N -0.56 -14.25 5.29 -10.97 -0.06 -14.31 16 10 C 0.44 10.24 7.82 -10.99 -0.09 10.16 16 11 O -0.58 -15.48 15.83 5.55 0.09 -15.39 16 12 C 0.05 0.81 5.79 -4.97 -0.03 0.79 16 13 N -0.64 -9.22 6.00 -100.39 -0.60 -9.82 16 14 C 0.08 0.86 0.66 -130.79 -0.09 0.77 16 15 C 0.14 1.67 4.99 -4.04 -0.02 1.65 16 16 N -0.71 -8.28 5.40 -61.25 -0.33 -8.61 16 17 C 0.56 7.56 7.78 -12.33 -0.10 7.46 16 18 O -0.54 -8.94 16.42 5.32 0.09 -8.85 16 19 C -0.18 -2.16 5.89 -104.82 -0.62 -2.77 16 20 C -0.02 -0.19 9.72 -38.87 -0.38 -0.57 16 21 C -0.18 -1.48 10.10 -39.50 -0.40 -1.88 16 22 C 0.12 1.05 11.17 -17.47 -0.20 0.85 16 23 N -0.49 -5.50 10.35 -12.91 -0.13 -5.63 16 24 C 0.14 1.53 10.71 -17.13 -0.18 1.34 16 25 C -0.17 -1.63 7.17 -25.91 -0.19 -1.81 16 26 C -0.14 -1.23 7.75 -25.91 -0.20 -1.43 16 27 C -0.13 -1.15 6.97 -25.92 -0.18 -1.33 16 28 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.39 9.57 7.90 -40.82 -0.32 9.25 16 30 H 0.05 0.73 6.71 -51.93 -0.35 0.38 16 31 H 0.09 1.45 6.50 -51.93 -0.34 1.12 16 32 H 0.35 5.29 7.68 -39.29 -0.30 4.98 16 33 H 0.07 0.77 8.02 -51.93 -0.42 0.35 16 34 H 0.07 1.02 6.52 -51.93 -0.34 0.68 16 35 H 0.41 4.23 6.32 -40.82 -0.26 3.97 16 36 H 0.15 1.44 7.74 -52.49 -0.41 1.04 16 37 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 38 H 0.16 0.91 8.06 -52.48 -0.42 0.49 16 39 H 0.16 1.48 6.42 -52.49 -0.34 1.14 16 40 H 0.09 0.74 8.02 -51.93 -0.42 0.32 16 41 H 0.07 0.79 6.71 -51.93 -0.35 0.45 16 42 H 0.08 0.77 7.73 -51.93 -0.40 0.37 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.09 0.67 8.10 -51.93 -0.42 0.25 16 LS Contribution 377.14 15.07 5.68 5.68 Total: -1.00 -33.91 377.14 -8.32 -42.23 By element: Atomic # 1 Polarization: 23.14 SS G_CDS: -5.85 Total: 17.29 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: -2.90 Total: 5.22 kcal Atomic # 7 Polarization: -61.90 SS G_CDS: -0.40 Total: -62.30 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: 0.18 Total: -24.24 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.91 -8.32 -42.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326772768.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.451 kcal (2) G-P(sol) polarization free energy of solvation -33.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds