Wall clock time and date at job start Sat Apr 11 2020 03:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86805 * 119.99794 * 2 1 4 4 H 1.48493 * 109.47070 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47159 * 300.00267 * 3 2 1 6 6 H 1.48499 * 109.47002 * 60.00269 * 3 2 1 7 7 C 1.38948 * 120.00223 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99924 * 179.97438 * 7 2 1 9 9 N 1.37093 * 120.00052 * 0.02562 * 7 2 1 10 10 C 1.34775 * 120.00265 * 180.02562 * 9 7 2 11 11 O 1.21287 * 119.99819 * 359.97438 * 10 9 7 12 12 C 1.50699 * 120.00127 * 179.97438 * 10 9 7 13 13 N 1.46904 * 109.47077 * 179.97438 * 12 10 9 14 14 C 1.46898 * 110.99867 * 177.75100 * 13 12 10 15 15 C 1.53002 * 112.84940 * 294.50732 * 14 13 12 16 16 N 1.46503 * 109.46973 * 292.58392 * 15 14 13 17 17 C 1.34773 * 120.00591 * 176.03128 * 16 15 14 18 18 O 1.21557 * 119.99436 * 0.02562 * 17 16 15 19 19 C 1.47839 * 120.00703 * 179.97438 * 17 16 15 20 20 C 1.40023 * 120.56184 * 179.97438 * 19 17 16 21 21 C 1.38355 * 118.28822 * 180.25358 * 20 19 17 22 22 C 1.38353 * 119.30017 * 359.46040 * 21 20 19 23 23 N 1.31926 * 121.08238 * 0.55662 * 22 21 20 24 24 C 1.31694 * 121.87720 * 359.71935 * 23 22 21 25 25 C 1.53783 * 113.69577 * 65.77145 * 14 13 12 26 26 C 1.53788 * 87.07869 * 89.12734 * 25 14 13 27 27 C 1.53776 * 113.61623 * 163.31163 * 14 13 12 28 28 H 0.96999 * 120.00039 * 359.97438 * 1 2 3 29 29 H 0.97003 * 119.99841 * 359.97438 * 9 7 2 30 30 H 1.09000 * 109.47019 * 59.99731 * 12 10 9 31 31 H 1.09005 * 109.46998 * 299.99621 * 12 10 9 32 32 H 1.00896 * 110.99899 * 301.69917 * 13 12 10 33 33 H 1.09001 * 109.47435 * 172.59035 * 15 14 13 34 34 H 1.08998 * 109.47704 * 52.58376 * 15 14 13 35 35 H 0.97006 * 120.00104 * 356.03264 * 16 15 14 36 36 H 1.07997 * 120.85110 * 359.97438 * 20 19 17 37 37 H 1.08002 * 120.34859 * 179.72799 * 21 20 19 38 38 H 1.08005 * 119.45552 * 180.27518 * 22 21 20 39 39 H 1.08002 * 119.71480 * 179.97438 * 24 23 22 40 40 H 1.08993 * 113.61768 * 203.67558 * 25 14 13 41 41 H 1.08999 * 113.61103 * 334.57943 * 25 14 13 42 42 H 1.09001 * 113.61242 * 270.88428 * 26 25 14 43 43 H 1.08997 * 113.61143 * 139.98362 * 26 25 14 44 44 H 1.09006 * 113.61533 * 25.34448 * 27 14 13 45 45 H 1.09001 * 113.61697 * 156.24585 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3465 0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8894 2.3964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2032 -0.0010 9 7 1.3235 -2.3906 -0.0016 10 6 1.9974 -3.5578 -0.0016 11 8 3.2103 -3.5577 -0.0011 12 6 1.2440 -4.8629 -0.0022 13 7 2.1986 -5.9794 -0.0027 14 6 1.4991 -7.2701 0.0506 15 6 0.7405 -7.4810 1.3624 16 7 1.6973 -7.6136 2.4639 17 6 1.2541 -7.7277 3.7316 18 8 0.0603 -7.7210 3.9609 19 6 2.2195 -7.8620 4.8431 20 6 1.7719 -7.9807 6.1645 21 6 2.7164 -8.0985 7.1686 22 6 4.0596 -8.1065 6.8372 23 7 4.4523 -7.9929 5.5829 24 6 3.5921 -7.8729 4.5929 25 6 0.6587 -7.5697 -1.2020 26 6 1.9200 -8.2176 -1.7971 27 6 2.3799 -8.4651 -0.3507 28 1 -0.4850 0.8400 0.0004 29 1 0.3535 -2.3906 -0.0016 30 1 0.6176 -4.9204 -0.8924 31 1 0.6170 -4.9208 0.8876 32 1 2.8098 -5.9322 -0.8041 33 1 0.1391 -8.3874 1.2927 34 1 0.0897 -6.6265 1.5473 35 1 2.6499 -7.6192 2.2809 36 1 0.7167 -7.9759 6.3943 37 1 2.4082 -8.1876 8.1999 38 1 4.7989 -8.2028 7.6186 39 1 3.9522 -7.7817 3.5788 40 1 -0.1527 -8.2756 -1.0248 41 1 0.3344 -6.6755 -1.7343 42 1 2.5537 -7.5187 -2.3433 43 1 1.7194 -9.1327 -2.3542 44 1 3.4452 -8.2939 -0.1958 45 1 2.0390 -9.4159 0.0592 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326772768.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:06:32 Heat of formation + Delta-G solvation = -36.032452 kcal Electronic energy + Delta-G solvation = -28014.716114 eV Core-core repulsion = 24031.730036 eV Total energy + Delta-G solvation = -3982.986078 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.73043 -41.05184 -39.97200 -39.60011 -36.04197 -35.59714 -34.35702 -33.54808 -33.23891 -32.56135 -29.24073 -28.20385 -26.76144 -25.91958 -25.28462 -24.49369 -23.15725 -21.72566 -21.10210 -19.96542 -19.91397 -19.05821 -17.88877 -17.83287 -17.55042 -17.04156 -16.67133 -16.47404 -16.35504 -16.02953 -15.85153 -15.81826 -15.50094 -14.87890 -14.79099 -14.59406 -14.27613 -14.13821 -14.10369 -13.68315 -13.56187 -13.25498 -13.18854 -13.14607 -12.95315 -12.56902 -12.42167 -12.12890 -11.67707 -11.64268 -11.52543 -11.32190 -11.12126 -10.98574 -10.49028 -10.37557 -10.32697 -10.03403 -10.02008 -9.35497 -8.48451 -5.97413 -0.38678 0.19516 1.35030 1.40267 1.54623 1.78663 2.02753 2.07151 2.27061 2.79984 2.84206 3.18488 3.30082 3.43923 3.54064 3.65250 3.75693 3.78071 3.81442 3.93661 3.94362 4.04403 4.24424 4.35157 4.43318 4.45582 4.49777 4.57770 4.65192 4.74839 4.83818 4.87095 4.99860 5.08062 5.10475 5.12338 5.19431 5.31521 5.39310 5.41215 5.57830 5.88367 6.07677 6.37221 6.45864 6.57304 6.83697 7.09961 7.10590 7.53845 8.08494 8.69242 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.009031 B = 0.003182 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3099.775234 B = 8797.663721 C =10723.277614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.014 4.014 3 Si 0.993 3.007 4 H -0.272 1.272 5 H -0.269 1.269 6 H -0.272 1.272 7 C -0.333 4.333 8 H 0.080 0.920 9 N -0.574 5.574 10 C 0.440 3.560 11 O -0.618 6.618 12 C 0.066 3.934 13 N -0.647 5.647 14 C 0.076 3.924 15 C 0.142 3.858 16 N -0.697 5.697 17 C 0.558 3.442 18 O -0.579 6.579 19 C -0.203 4.203 20 C -0.031 4.031 21 C -0.169 4.169 22 C 0.117 3.883 23 N -0.510 5.510 24 C 0.133 3.867 25 C -0.164 4.164 26 C -0.136 4.136 27 C -0.120 4.120 28 H 0.277 0.723 29 H 0.395 0.605 30 H 0.068 0.932 31 H 0.091 0.909 32 H 0.352 0.648 33 H 0.087 0.913 34 H 0.050 0.950 35 H 0.412 0.588 36 H 0.146 0.854 37 H 0.177 0.823 38 H 0.194 0.806 39 H 0.169 0.831 40 H 0.104 0.896 41 H 0.061 0.939 42 H 0.073 0.927 43 H 0.087 0.913 44 H 0.078 0.922 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.938 -21.498 6.693 22.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.214 4.214 3 Si 0.817 3.183 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.462 4.462 8 H 0.098 0.902 9 N -0.212 5.212 10 C 0.227 3.773 11 O -0.505 6.505 12 C -0.066 4.066 13 N -0.279 5.279 14 C -0.016 4.016 15 C 0.018 3.982 16 N -0.348 5.348 17 C 0.346 3.654 18 O -0.461 6.461 19 C -0.208 4.208 20 C -0.058 4.058 21 C -0.189 4.189 22 C -0.039 4.039 23 N -0.219 5.219 24 C -0.025 4.025 25 C -0.204 4.204 26 C -0.174 4.174 27 C -0.158 4.158 28 H 0.087 0.913 29 H 0.228 0.772 30 H 0.086 0.914 31 H 0.109 0.891 32 H 0.172 0.828 33 H 0.105 0.895 34 H 0.069 0.931 35 H 0.250 0.750 36 H 0.164 0.836 37 H 0.195 0.805 38 H 0.210 0.790 39 H 0.186 0.814 40 H 0.122 0.878 41 H 0.080 0.920 42 H 0.092 0.908 43 H 0.106 0.894 44 H 0.096 0.904 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 2.785 -21.298 7.300 22.686 hybrid contribution -1.220 1.258 -0.904 1.972 sum 1.565 -20.040 6.396 21.094 Atomic orbital electron populations 1.69686 1.06892 1.29231 1.50424 1.26059 0.96531 1.02481 0.96282 0.84870 0.78089 0.77065 0.78320 1.19654 1.19464 1.19756 1.19705 0.92707 0.83975 1.49821 0.90203 1.41947 1.09270 1.04830 1.65114 1.20782 0.88258 0.85996 0.82217 1.90488 1.15566 1.87920 1.56484 1.21456 0.94276 0.88372 1.02533 1.59951 1.19198 0.99260 1.49482 1.22451 0.95809 0.90264 0.93093 1.21355 0.90993 1.01570 0.84255 1.45667 1.11505 1.72357 1.05243 1.18337 0.87683 0.76053 0.83359 1.90745 1.17731 1.52806 1.84810 1.20996 0.95188 1.09329 0.95284 1.21961 1.01964 0.90794 0.91068 1.22527 0.93439 1.01016 1.01882 1.23659 0.95941 0.90754 0.93524 1.67771 1.39326 1.13335 1.01487 1.23172 0.87996 0.91761 0.99619 1.23630 0.98492 1.01691 0.96608 1.22790 0.96584 1.01526 0.96486 1.23058 1.00102 0.96671 0.95970 0.91324 0.77191 0.91429 0.89122 0.82800 0.89528 0.93128 0.75034 0.83589 0.80525 0.78954 0.81402 0.87802 0.91980 0.90794 0.89397 0.90355 0.87542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.51 13.05 21.66 0.28 -50.23 16 2 C -0.01 -0.75 5.50 84.93 0.47 -0.29 16 3 Si 0.99 43.42 29.55 68.60 2.03 45.44 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 6 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 7 C -0.33 -19.09 9.68 84.04 0.81 -18.28 16 8 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 9 N -0.57 -29.90 5.29 -307.00 -1.62 -31.52 16 10 C 0.44 20.91 7.82 87.66 0.69 21.59 16 11 O -0.62 -33.75 15.83 -3.05 -0.05 -33.79 16 12 C 0.07 2.25 5.79 85.56 0.50 2.74 16 13 N -0.65 -18.48 6.00 -471.53 -2.83 -21.31 16 14 C 0.08 1.56 0.66 4.05 0.00 1.56 16 15 C 0.14 3.25 4.99 86.38 0.43 3.68 16 16 N -0.70 -16.27 5.40 -465.97 -2.51 -18.79 16 17 C 0.56 15.28 7.78 86.79 0.68 15.96 16 18 O -0.58 -19.65 16.42 -3.90 -0.06 -19.71 16 19 C -0.20 -4.77 5.89 -19.99 -0.12 -4.88 16 20 C -0.03 -0.63 9.72 22.73 0.22 -0.41 16 21 C -0.17 -2.40 10.10 22.33 0.23 -2.17 16 22 C 0.12 1.82 11.17 84.71 0.95 2.76 16 23 N -0.51 -10.97 10.35 -194.75 -2.01 -12.98 16 24 C 0.13 2.88 10.71 85.02 0.91 3.79 16 25 C -0.16 -2.87 7.17 31.12 0.22 -2.65 16 26 C -0.14 -2.08 7.75 31.12 0.24 -1.83 16 27 C -0.12 -1.84 6.97 31.12 0.22 -1.62 16 28 H 0.28 14.20 8.31 -92.71 -0.77 13.43 16 29 H 0.39 19.75 7.90 -92.71 -0.73 19.01 16 30 H 0.07 2.05 6.71 -2.39 -0.02 2.04 16 31 H 0.09 3.07 6.50 -2.38 -0.02 3.05 16 32 H 0.35 10.42 7.68 -89.70 -0.69 9.74 16 33 H 0.09 1.74 8.02 -2.39 -0.02 1.72 16 34 H 0.05 1.41 6.52 -2.39 -0.02 1.39 16 35 H 0.41 8.45 6.32 -92.70 -0.59 7.87 16 36 H 0.15 2.88 7.74 -2.91 -0.02 2.85 16 37 H 0.18 1.19 8.06 -2.91 -0.02 1.16 16 38 H 0.19 1.55 8.06 -2.91 -0.02 1.53 16 39 H 0.17 3.10 6.42 -2.91 -0.02 3.08 16 40 H 0.10 1.49 8.02 -2.39 -0.02 1.47 16 41 H 0.06 1.25 6.71 -2.39 -0.02 1.23 16 42 H 0.07 1.27 7.73 -2.39 -0.02 1.25 16 43 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 45 H 0.11 1.30 8.10 -2.39 -0.02 1.28 16 Total: -1.00 -74.94 377.14 -1.29 -76.23 By element: Atomic # 1 Polarization: 47.65 SS G_CDS: -0.94 Total: 46.70 kcal Atomic # 6 Polarization: 13.52 SS G_CDS: 6.44 Total: 19.95 kcal Atomic # 7 Polarization: -126.12 SS G_CDS: -8.70 Total: -134.82 kcal Atomic # 8 Polarization: -53.39 SS G_CDS: -0.11 Total: -53.51 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.44 kcal Total: -74.94 -1.29 -76.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326772768.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.199 kcal (2) G-P(sol) polarization free energy of solvation -74.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds