Wall clock time and date at job start Sat Apr 11 2020 03:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86804 * 120.00040 * 2 1 4 4 H 1.48499 * 109.46843 * 269.99817 * 3 2 1 5 5 H 1.48498 * 109.46910 * 30.00209 * 3 2 1 6 6 H 1.48503 * 109.46891 * 149.99783 * 3 2 1 7 7 C 1.37879 * 119.99666 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99246 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99947 * 359.72706 * 7 2 1 10 10 H 1.09003 * 109.49793 * 60.27537 * 9 7 2 11 11 C 1.53044 * 109.49638 * 180.33883 * 9 7 2 12 12 C 1.53035 * 109.53950 * 181.31688 * 11 9 7 13 13 C 1.53187 * 109.31182 * 298.63601 * 12 11 9 14 14 N 1.46929 * 108.77985 * 54.63415 * 13 12 11 15 15 C 1.34773 * 120.63326 * 126.43157 * 14 13 12 16 16 O 1.21347 * 120.00009 * 174.95433 * 15 14 13 17 17 C 1.49456 * 119.99846 * 354.95614 * 15 14 13 18 18 O 1.21354 * 119.99579 * 275.08218 * 17 15 14 19 19 N 1.34779 * 120.00127 * 95.08594 * 17 15 14 20 20 C 1.46939 * 120.66046 * 185.01567 * 19 17 15 21 21 C 1.53383 * 109.42894 * 113.93698 * 20 19 17 22 22 C 1.50844 * 108.65988 * 45.84595 * 21 20 19 23 23 C 1.34668 * 128.09070 * 162.30096 * 22 21 20 24 24 N 1.35180 * 107.66591 * 179.88845 * 23 22 21 25 25 H 0.97001 * 126.00489 * 180.02562 * 24 23 22 26 26 N 1.40320 * 107.99633 * 0.02935 * 24 23 22 27 27 C 1.30020 * 108.07797 * 0.03258 * 26 24 23 28 28 C 1.47418 * 120.66003 * 4.73346 * 19 17 15 29 29 C 1.46934 * 118.76409 * 306.41485 * 14 13 12 30 30 H 0.97003 * 119.99592 * 0.02562 * 1 2 3 31 31 H 1.08999 * 109.45978 * 301.33664 * 11 9 7 32 32 H 1.08997 * 109.46011 * 61.30873 * 11 9 7 33 33 H 1.09006 * 109.50023 * 58.58588 * 12 11 9 34 34 H 1.09000 * 109.49775 * 178.68347 * 12 11 9 35 35 H 1.09003 * 109.58870 * 174.42537 * 13 12 11 36 36 H 1.09003 * 109.58642 * 294.84703 * 13 12 11 37 37 H 1.09003 * 109.47508 * 233.91708 * 20 19 17 38 38 H 1.09000 * 109.48123 * 353.94293 * 20 19 17 39 39 H 1.09003 * 109.61057 * 165.59702 * 21 20 19 40 40 H 1.09004 * 109.60747 * 286.09814 * 21 20 19 41 41 H 1.07995 * 126.16495 * 359.89551 * 23 22 21 42 42 H 1.08998 * 109.93733 * 344.61011 * 28 19 17 43 43 H 1.08998 * 109.93947 * 105.84244 * 28 19 17 44 44 H 1.09002 * 109.55864 * 293.78212 * 29 14 13 45 45 H 1.08996 * 109.61585 * 173.35209 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0073 10 1 0.6241 -2.5619 -0.8822 11 6 2.2449 -3.6628 0.0151 12 6 1.4810 -4.9886 -0.0112 13 6 0.6045 -5.0931 1.2408 14 7 -0.2542 -3.9033 1.3177 15 6 -1.5906 -4.0277 1.4399 16 8 -2.2802 -3.0412 1.5944 17 6 -2.2233 -5.3806 1.3853 18 8 -2.4997 -5.8783 0.3135 19 7 -2.4870 -6.0478 2.5262 20 6 -3.0068 -7.4217 2.4878 21 6 -1.9613 -8.3793 3.0731 22 6 -1.4253 -7.7855 4.3519 23 6 -0.7559 -8.4084 5.3406 24 7 -0.4701 -7.4863 6.2868 25 1 0.0073 -7.6487 7.1155 26 7 -0.9853 -6.2529 5.8599 27 6 -1.5563 -6.4320 4.7056 28 6 -2.2539 -5.4161 3.8376 29 6 0.3712 -2.5750 1.2591 30 1 -0.4850 0.8401 -0.0004 31 1 2.8880 -3.5969 -0.8625 32 1 2.8550 -3.6133 0.9169 33 1 0.8516 -5.0284 -0.9003 34 1 2.1897 -5.8166 -0.0293 35 1 -0.0153 -5.9877 1.1794 36 1 1.2374 -5.1448 2.1267 37 1 -3.9228 -7.4803 3.0758 38 1 -3.2187 -7.7015 1.4558 39 1 -2.4252 -9.3430 3.2837 40 1 -1.1464 -8.5107 2.3612 41 1 -0.4945 -9.4558 5.3717 42 1 -1.6239 -4.5346 3.7187 43 1 -3.2053 -5.1360 4.2897 44 1 0.9847 -2.4211 2.1469 45 1 -0.4020 -1.8084 1.2094 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328192853.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:06:35 Heat of formation + Delta-G solvation = 14.722259 kcal Electronic energy + Delta-G solvation = -29738.589983 eV Core-core repulsion = 25757.804795 eV Total energy + Delta-G solvation = -3980.785188 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.78703 -40.43691 -38.52407 -36.76200 -36.46630 -33.41809 -32.89350 -31.95054 -31.82159 -29.88119 -29.21639 -27.05755 -25.83092 -25.05577 -23.86081 -22.04333 -21.83740 -21.35112 -20.12144 -19.20237 -18.12568 -17.96524 -17.45072 -16.60284 -16.20139 -16.07973 -15.65143 -14.86510 -14.76429 -14.56761 -14.27167 -13.94975 -13.84807 -13.74421 -13.48087 -13.35064 -13.12081 -12.79865 -12.64564 -12.42750 -12.25406 -12.14516 -11.96967 -11.49814 -11.04257 -11.01681 -10.93195 -10.79218 -10.50617 -10.40436 -10.24981 -9.94769 -9.75782 -9.27420 -9.15808 -8.98750 -8.85114 -8.71225 -8.44656 -7.91033 -6.00630 -4.09469 1.60789 2.25788 2.40443 2.43728 2.63499 2.99428 3.31767 3.39015 3.41039 3.65675 4.17724 4.38460 4.43057 4.48153 4.77974 4.90909 5.07045 5.14987 5.23200 5.25691 5.30074 5.39532 5.46163 5.48885 5.63663 5.66893 5.72034 5.78681 5.94829 6.15543 6.21013 6.26792 6.29270 6.55810 6.63436 6.80813 6.94176 6.97075 7.02996 7.05554 7.12619 7.37537 7.57507 7.82697 7.89202 7.92706 8.07544 8.32994 8.51119 8.94527 9.56361 11.04971 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016497 B = 0.003486 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.904835 B = 8031.209480 C = 8307.939538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.063 3.937 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.059 0.941 9 C 0.039 3.961 10 H 0.032 0.968 11 C -0.110 4.110 12 C -0.133 4.133 13 C 0.110 3.890 14 N -0.584 5.584 15 C 0.504 3.496 16 O -0.511 6.511 17 C 0.525 3.475 18 O -0.511 6.511 19 N -0.601 5.601 20 C 0.110 3.890 21 C -0.056 4.056 22 C -0.231 4.231 23 C 0.064 3.936 24 N -0.481 5.481 25 H 0.441 0.559 26 N -0.272 5.272 27 C 0.068 3.932 28 C 0.191 3.809 29 C 0.111 3.889 30 H 0.264 0.736 31 H 0.054 0.946 32 H 0.050 0.950 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.101 0.899 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.178 0.822 42 H 0.106 0.894 43 H 0.099 0.901 44 H 0.049 0.951 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.147 -20.554 11.553 23.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.140 4.140 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.559 4.559 8 H 0.078 0.922 9 C 0.019 3.981 10 H 0.050 0.950 11 C -0.148 4.148 12 C -0.172 4.172 13 C -0.013 4.013 14 N -0.317 5.317 15 C 0.285 3.715 16 O -0.386 6.386 17 C 0.309 3.691 18 O -0.384 6.384 19 N -0.337 5.337 20 C -0.012 4.012 21 C -0.095 4.095 22 C -0.243 4.243 23 C -0.082 4.082 24 N -0.190 5.190 25 H 0.285 0.715 26 N -0.095 5.095 27 C -0.102 4.102 28 C 0.066 3.934 29 C -0.008 4.008 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.119 0.881 39 H 0.102 0.898 40 H 0.094 0.906 41 H 0.195 0.805 42 H 0.124 0.876 43 H 0.117 0.883 44 H 0.068 0.932 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.543 -19.302 11.926 22.832 hybrid contribution 0.658 0.044 -0.018 0.660 sum -1.884 -19.259 11.909 22.721 Atomic orbital electron populations 1.69875 1.05765 1.26966 1.49202 1.25060 0.94885 0.99304 0.94753 0.86573 0.79779 0.83417 0.78119 1.20664 1.21152 1.19911 1.21059 0.92934 0.89975 1.51957 0.92248 1.18997 0.92673 0.92486 0.93899 0.95025 1.21631 0.98538 0.93885 1.00735 1.21942 0.98585 0.99235 0.97396 1.21676 0.93559 0.87023 0.99047 1.48596 1.04261 1.09905 1.68973 1.19951 0.83638 0.88741 0.79152 1.90830 1.61534 1.37470 1.48746 1.20760 0.78578 0.85910 0.83873 1.90762 1.52076 1.67311 1.28276 1.48093 1.65122 1.15252 1.05272 1.21646 0.96034 0.79953 1.03537 1.20350 0.98506 0.97893 0.92714 1.19961 1.10706 0.93467 1.00155 1.22082 0.99654 0.96277 0.90174 1.46347 1.47346 1.05750 1.19559 0.71535 1.77054 1.16237 1.02442 1.13754 1.22313 0.98767 0.95351 0.93731 1.19957 1.00276 0.92608 0.80515 1.22485 0.98866 0.80346 0.99120 0.92545 0.92749 0.93112 0.91710 0.92035 0.91615 0.91501 0.90527 0.88061 0.89787 0.90594 0.80518 0.87574 0.88281 0.93217 0.85690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.57 11.39 55.43 0.63 -24.94 16 2 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 3 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.52 -14.00 8.57 -34.44 -0.30 -14.29 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.04 0.95 2.25 -91.65 -0.21 0.75 16 10 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 11 C -0.11 -2.20 5.11 -26.69 -0.14 -2.33 16 12 C -0.13 -2.26 6.08 -26.62 -0.16 -2.42 16 13 C 0.11 1.84 6.36 -3.71 -0.02 1.82 16 14 N -0.58 -11.97 2.97 -173.27 -0.52 -12.48 16 15 C 0.50 10.59 5.53 -11.58 -0.06 10.52 16 16 O -0.51 -12.49 16.53 5.50 0.09 -12.40 16 17 C 0.53 9.34 5.47 -11.58 -0.06 9.28 16 18 O -0.51 -10.11 16.51 5.49 0.09 -10.02 16 19 N -0.60 -8.16 2.93 -174.20 -0.51 -8.67 16 20 C 0.11 1.12 6.33 -3.60 -0.02 1.09 16 21 C -0.06 -0.45 6.44 -27.61 -0.18 -0.63 16 22 C -0.23 -2.22 5.93 -104.96 -0.62 -2.84 16 23 C 0.06 0.47 11.94 -17.34 -0.21 0.26 16 24 N -0.48 -4.00 7.37 30.37 0.22 -3.77 16 25 H 0.44 2.19 8.96 -182.43 -1.64 0.55 16 26 N -0.27 -3.33 12.68 33.68 0.43 -2.90 16 27 C 0.07 0.81 7.19 -82.49 -0.59 0.22 16 28 C 0.19 2.46 6.67 -4.67 -0.03 2.43 16 29 C 0.11 2.67 5.38 -3.71 -0.02 2.65 16 30 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 31 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 1.01 6.31 -51.93 -0.33 0.69 16 36 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.10 1.09 6.99 -51.93 -0.36 0.72 16 39 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.18 0.58 8.06 -52.49 -0.42 0.16 16 42 H 0.11 1.58 6.48 -51.93 -0.34 1.25 16 43 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 45 H 0.13 3.49 5.15 -51.93 -0.27 3.22 16 LS Contribution 363.36 15.07 5.48 5.48 Total: -1.00 -34.44 363.36 -9.37 -43.81 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -7.54 Total: 1.61 kcal Atomic # 6 Polarization: 10.86 SS G_CDS: -2.72 Total: 8.14 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: 0.26 Total: -52.76 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: 0.18 Total: -22.42 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.44 -9.37 -43.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328192853.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.535 kcal (2) G-P(sol) polarization free energy of solvation -34.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds