Wall clock time and date at job start Sat Apr 11 2020 03:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86804 * 120.00040 * 2 1 4 4 H 1.48499 * 109.46843 * 269.99817 * 3 2 1 5 5 H 1.48498 * 109.46910 * 30.00209 * 3 2 1 6 6 H 1.48503 * 109.46891 * 149.99783 * 3 2 1 7 7 C 1.37879 * 119.99666 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99246 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99947 * 359.72706 * 7 2 1 10 10 H 1.09003 * 109.49793 * 60.27537 * 9 7 2 11 11 C 1.53044 * 109.49638 * 180.33883 * 9 7 2 12 12 C 1.53035 * 109.53950 * 181.31688 * 11 9 7 13 13 C 1.53187 * 109.31182 * 298.63601 * 12 11 9 14 14 N 1.46929 * 108.77985 * 54.63415 * 13 12 11 15 15 C 1.34773 * 120.63326 * 126.43157 * 14 13 12 16 16 O 1.21347 * 120.00009 * 174.95433 * 15 14 13 17 17 C 1.49456 * 119.99846 * 354.95614 * 15 14 13 18 18 O 1.21354 * 119.99579 * 275.08218 * 17 15 14 19 19 N 1.34779 * 120.00127 * 95.08594 * 17 15 14 20 20 C 1.46939 * 120.66046 * 185.01567 * 19 17 15 21 21 C 1.53383 * 109.42894 * 113.93698 * 20 19 17 22 22 C 1.50844 * 108.65988 * 45.84595 * 21 20 19 23 23 C 1.34668 * 128.09070 * 162.30096 * 22 21 20 24 24 N 1.35180 * 107.66591 * 179.88845 * 23 22 21 25 25 H 0.97001 * 126.00489 * 180.02562 * 24 23 22 26 26 N 1.40320 * 107.99633 * 0.02935 * 24 23 22 27 27 C 1.30020 * 108.07797 * 0.03258 * 26 24 23 28 28 C 1.47418 * 120.66003 * 4.73346 * 19 17 15 29 29 C 1.46934 * 118.76409 * 306.41485 * 14 13 12 30 30 H 0.97003 * 119.99592 * 0.02562 * 1 2 3 31 31 H 1.08999 * 109.45978 * 301.33664 * 11 9 7 32 32 H 1.08997 * 109.46011 * 61.30873 * 11 9 7 33 33 H 1.09006 * 109.50023 * 58.58588 * 12 11 9 34 34 H 1.09000 * 109.49775 * 178.68347 * 12 11 9 35 35 H 1.09003 * 109.58870 * 174.42537 * 13 12 11 36 36 H 1.09003 * 109.58642 * 294.84703 * 13 12 11 37 37 H 1.09003 * 109.47508 * 233.91708 * 20 19 17 38 38 H 1.09000 * 109.48123 * 353.94293 * 20 19 17 39 39 H 1.09003 * 109.61057 * 165.59702 * 21 20 19 40 40 H 1.09004 * 109.60747 * 286.09814 * 21 20 19 41 41 H 1.07995 * 126.16495 * 359.89551 * 23 22 21 42 42 H 1.08998 * 109.93733 * 344.61011 * 28 19 17 43 43 H 1.08998 * 109.93947 * 105.84244 * 28 19 17 44 44 H 1.09002 * 109.55864 * 293.78212 * 29 14 13 45 45 H 1.08996 * 109.61585 * 173.35209 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0073 10 1 0.6241 -2.5619 -0.8822 11 6 2.2449 -3.6628 0.0151 12 6 1.4810 -4.9886 -0.0112 13 6 0.6045 -5.0931 1.2408 14 7 -0.2542 -3.9033 1.3177 15 6 -1.5906 -4.0277 1.4399 16 8 -2.2802 -3.0412 1.5944 17 6 -2.2233 -5.3806 1.3853 18 8 -2.4997 -5.8783 0.3135 19 7 -2.4870 -6.0478 2.5262 20 6 -3.0068 -7.4217 2.4878 21 6 -1.9613 -8.3793 3.0731 22 6 -1.4253 -7.7855 4.3519 23 6 -0.7559 -8.4084 5.3406 24 7 -0.4701 -7.4863 6.2868 25 1 0.0073 -7.6487 7.1155 26 7 -0.9853 -6.2529 5.8599 27 6 -1.5563 -6.4320 4.7056 28 6 -2.2539 -5.4161 3.8376 29 6 0.3712 -2.5750 1.2591 30 1 -0.4850 0.8401 -0.0004 31 1 2.8880 -3.5969 -0.8625 32 1 2.8550 -3.6133 0.9169 33 1 0.8516 -5.0284 -0.9003 34 1 2.1897 -5.8166 -0.0293 35 1 -0.0153 -5.9877 1.1794 36 1 1.2374 -5.1448 2.1267 37 1 -3.9228 -7.4803 3.0758 38 1 -3.2187 -7.7015 1.4558 39 1 -2.4252 -9.3430 3.2837 40 1 -1.1464 -8.5107 2.3612 41 1 -0.4945 -9.4558 5.3717 42 1 -1.6239 -4.5346 3.7187 43 1 -3.2053 -5.1360 4.2897 44 1 0.9847 -2.4211 2.1469 45 1 -0.4020 -1.8084 1.2094 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328192853.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:06:35 Heat of formation + Delta-G solvation = -9.866159 kcal Electronic energy + Delta-G solvation = -29739.656217 eV Core-core repulsion = 25757.804795 eV Total energy + Delta-G solvation = -3981.851422 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.61339 -41.82232 -40.01841 -38.47337 -37.61059 -35.35738 -33.76433 -33.50905 -32.78472 -31.68803 -30.01911 -28.29873 -27.30245 -26.81137 -25.06754 -23.58790 -23.17436 -22.09986 -21.40811 -20.59077 -19.52705 -18.84944 -18.64671 -18.19280 -17.96052 -17.51138 -16.71454 -16.49795 -15.96855 -15.83840 -15.75069 -15.32603 -15.10550 -14.99728 -14.63022 -14.53514 -14.42112 -14.21085 -14.08774 -13.87862 -13.65010 -13.21519 -13.03972 -12.89189 -12.77310 -12.62790 -12.32323 -12.25912 -12.20322 -11.90113 -11.71635 -11.54697 -11.15391 -10.99529 -10.62809 -10.54092 -10.52159 -10.04836 -9.65683 -9.37110 -8.11723 -6.28885 0.86434 0.96483 1.05554 1.39121 1.42865 1.44387 1.53809 1.67727 1.91753 2.28413 2.42862 3.01380 3.17513 3.40361 3.77325 3.86330 3.99086 4.04422 4.10462 4.22539 4.24547 4.42160 4.46628 4.50123 4.63048 4.69146 4.70625 4.71963 4.76102 4.91021 5.01568 5.02701 5.09225 5.15012 5.19706 5.26896 5.31492 5.39248 5.54474 5.57080 5.82213 5.84510 5.93444 6.26067 6.30685 6.47256 6.56116 6.67305 6.78330 6.86956 7.41615 8.92405 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016497 B = 0.003486 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.904835 B = 8031.209480 C = 8307.939538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.010 3.990 3 Si 0.960 3.040 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.260 1.260 7 C -0.534 4.534 8 H 0.066 0.934 9 C 0.036 3.964 10 H -0.014 1.014 11 C -0.103 4.103 12 C -0.126 4.126 13 C 0.109 3.891 14 N -0.585 5.585 15 C 0.496 3.504 16 O -0.560 6.560 17 C 0.534 3.466 18 O -0.536 6.536 19 N -0.583 5.583 20 C 0.102 3.898 21 C -0.045 4.045 22 C -0.252 4.252 23 C 0.090 3.910 24 N -0.471 5.471 25 H 0.454 0.546 26 N -0.315 5.315 27 C 0.051 3.949 28 C 0.190 3.810 29 C 0.125 3.875 30 H 0.261 0.739 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.047 0.953 34 H 0.108 0.892 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.121 0.879 40 H 0.074 0.926 41 H 0.226 0.774 42 H 0.078 0.922 43 H 0.110 0.890 44 H 0.051 0.949 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.452 -24.189 13.073 27.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.189 4.189 3 Si 0.785 3.215 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.184 1.184 7 C -0.572 4.572 8 H 0.084 0.916 9 C 0.016 3.984 10 H 0.004 0.996 11 C -0.141 4.141 12 C -0.164 4.164 13 C -0.012 4.012 14 N -0.317 5.317 15 C 0.278 3.722 16 O -0.438 6.438 17 C 0.317 3.683 18 O -0.413 6.413 19 N -0.317 5.317 20 C -0.018 4.018 21 C -0.083 4.083 22 C -0.264 4.264 23 C -0.057 4.057 24 N -0.181 5.181 25 H 0.301 0.699 26 N -0.139 5.139 27 C -0.117 4.117 28 C 0.066 3.934 29 C 0.003 3.997 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.126 0.874 35 H 0.101 0.899 36 H 0.107 0.893 37 H 0.116 0.884 38 H 0.115 0.885 39 H 0.139 0.861 40 H 0.093 0.907 41 H 0.242 0.758 42 H 0.096 0.904 43 H 0.128 0.872 44 H 0.069 0.931 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.814 -22.998 13.492 26.676 hybrid contribution 0.128 1.108 -0.395 1.183 sum -0.686 -21.890 13.097 25.518 Atomic orbital electron populations 1.70078 1.07524 1.27408 1.50549 1.25912 0.95533 1.03011 0.94466 0.85526 0.78808 0.78956 0.78206 1.20226 1.21370 1.18423 1.21482 0.93403 0.91127 1.51205 0.91581 1.18946 0.93149 0.94204 0.92057 0.99578 1.21512 0.97612 0.93446 1.01500 1.21906 0.98862 0.99003 0.96598 1.21944 0.93483 0.85805 0.99993 1.48594 1.04823 1.09959 1.68356 1.20669 0.83578 0.89983 0.77960 1.90786 1.62644 1.39591 1.50811 1.19979 0.78939 0.84591 0.84825 1.90752 1.53761 1.67479 1.29281 1.48082 1.63211 1.16307 1.04135 1.22038 0.97790 0.77923 1.04063 1.20338 0.97780 0.98458 0.91753 1.20201 1.12160 0.92451 1.01558 1.22768 0.96988 0.97714 0.88247 1.46408 1.46537 1.04876 1.20312 0.69867 1.76973 1.17650 1.04866 1.14396 1.22106 0.99524 0.96133 0.93942 1.19894 1.00694 0.92366 0.80495 1.21938 0.97466 0.81441 0.98813 0.93030 0.92383 0.91818 0.93449 0.87375 0.89858 0.89275 0.88415 0.88530 0.86116 0.90743 0.75803 0.90394 0.87233 0.93106 0.90058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.17 11.39 21.45 0.24 -55.93 16 2 C 0.01 0.58 5.30 84.65 0.45 1.02 16 3 Si 0.96 44.36 29.54 68.60 2.03 46.38 16 4 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 5 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 6 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 7 C -0.53 -29.39 8.57 25.60 0.22 -29.17 16 8 H 0.07 3.47 7.74 -2.91 -0.02 3.44 16 9 C 0.04 1.83 2.25 -11.46 -0.03 1.80 16 10 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 11 C -0.10 -4.03 5.11 30.62 0.16 -3.87 16 12 C -0.13 -4.03 6.08 30.67 0.19 -3.84 16 13 C 0.11 3.51 6.36 86.36 0.55 4.06 16 14 N -0.58 -24.85 2.97 -820.46 -2.44 -27.28 16 15 C 0.50 21.95 5.53 87.27 0.48 22.43 16 16 O -0.56 -29.57 16.53 -3.24 -0.05 -29.62 16 17 C 0.53 19.37 5.47 87.27 0.48 19.85 16 18 O -0.54 -21.50 16.51 -3.26 -0.05 -21.56 16 19 N -0.58 -15.54 2.93 -823.42 -2.41 -17.95 16 20 C 0.10 1.83 6.33 86.42 0.55 2.38 16 21 C -0.04 -0.54 6.44 30.02 0.19 -0.35 16 22 C -0.25 -3.93 5.93 -20.08 -0.12 -4.05 16 23 C 0.09 0.88 11.94 83.36 1.00 1.87 16 24 N -0.47 -6.31 7.37 -57.84 -0.43 -6.73 16 25 H 0.45 3.05 8.96 -213.18 -1.91 1.14 16 26 N -0.31 -7.28 12.68 -47.34 -0.60 -7.88 16 27 C 0.05 1.15 7.19 43.39 0.31 1.46 16 28 C 0.19 4.94 6.67 85.47 0.57 5.51 16 29 C 0.12 6.30 5.38 86.36 0.46 6.76 16 30 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 31 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 34 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 35 H 0.08 2.42 6.31 -2.39 -0.02 2.40 16 36 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 37 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.10 1.89 6.99 -2.39 -0.02 1.87 16 39 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 41 H 0.23 -0.06 8.06 -2.91 -0.02 -0.08 16 42 H 0.08 2.47 6.48 -2.39 -0.02 2.46 16 43 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 44 H 0.05 2.49 8.14 -2.39 -0.02 2.47 16 45 H 0.08 4.89 5.15 -2.39 -0.01 4.88 16 Total: -1.00 -81.63 363.36 0.86 -80.77 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -0.88 Total: 13.95 kcal Atomic # 6 Polarization: 20.41 SS G_CDS: 5.46 Total: 25.87 kcal Atomic # 7 Polarization: -110.15 SS G_CDS: -5.63 Total: -115.78 kcal Atomic # 8 Polarization: -51.07 SS G_CDS: -0.11 Total: -51.18 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Total: -81.63 0.86 -80.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328192853.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.900 kcal (2) G-P(sol) polarization free energy of solvation -81.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds