Wall clock time and date at job start Sat Apr 11 2020 03:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00222 * 2 1 4 4 H 1.48503 * 109.47388 * 274.99995 * 3 2 1 5 5 H 1.48506 * 109.47215 * 34.99839 * 3 2 1 6 6 H 1.48500 * 109.47594 * 154.99939 * 3 2 1 7 7 C 1.37880 * 120.00078 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00364 * 186.31147 * 7 2 1 9 9 C 1.50704 * 119.99909 * 6.31405 * 7 2 1 10 10 H 1.08999 * 109.49892 * 297.99728 * 9 7 2 11 11 C 1.53040 * 109.49698 * 177.93140 * 9 7 2 12 12 C 1.53040 * 109.53814 * 178.68398 * 11 9 7 13 13 C 1.53189 * 109.31046 * 61.36270 * 12 11 9 14 14 N 1.46922 * 108.78147 * 305.36497 * 13 12 11 15 15 C 1.34776 * 120.63215 * 233.58809 * 14 13 12 16 16 O 1.21353 * 119.99733 * 185.01828 * 15 14 13 17 17 C 1.49446 * 120.00246 * 5.01717 * 15 14 13 18 18 O 1.21347 * 119.99823 * 273.95475 * 17 15 14 19 19 N 1.34772 * 119.99875 * 93.95055 * 17 15 14 20 20 C 1.46944 * 120.65519 * 175.05976 * 19 17 15 21 21 C 1.53379 * 109.43960 * 114.26819 * 20 19 17 22 22 C 1.50839 * 108.65754 * 45.84085 * 21 20 19 23 23 C 1.34676 * 128.08040 * 162.40628 * 22 21 20 24 24 N 1.35183 * 107.66087 * 179.73316 * 23 22 21 25 25 H 0.97006 * 126.00271 * 180.02562 * 24 23 22 26 26 N 1.40324 * 107.99779 * 0.03897 * 24 23 22 27 27 C 1.30031 * 108.07382 * 0.03748 * 26 24 23 28 28 C 1.47410 * 120.66381 * 355.33967 * 19 17 15 29 29 C 1.46922 * 118.73448 * 53.86190 * 14 13 12 30 30 H 0.96997 * 119.99991 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.45669 * 58.66324 * 11 9 7 32 32 H 1.09001 * 109.44619 * 298.69690 * 11 9 7 33 33 H 1.09001 * 109.49306 * 301.41732 * 12 11 9 34 34 H 1.08990 * 109.49812 * 181.31893 * 12 11 9 35 35 H 1.09011 * 109.58662 * 185.57522 * 13 12 11 36 36 H 1.08997 * 109.70421 * 65.22664 * 13 12 11 37 37 H 1.09006 * 109.47566 * 234.24601 * 20 19 17 38 38 H 1.08997 * 109.48210 * 354.26435 * 20 19 17 39 39 H 1.09005 * 109.58069 * 286.10425 * 21 20 19 40 40 H 1.09001 * 109.76409 * 165.69298 * 21 20 19 41 41 H 1.07993 * 126.17024 * 359.71380 * 23 22 21 42 42 H 1.09003 * 109.93648 * 344.31835 * 28 19 17 43 43 H 1.09001 * 109.94094 * 105.45772 * 28 19 17 44 44 H 1.09000 * 109.58898 * 65.92839 * 29 14 13 45 45 H 1.09007 * 109.58905 * 186.35571 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3911 2.1074 -1.3947 5 1 1.5035 2.6199 0.8030 6 1 3.5956 1.4120 0.5917 7 6 2.0045 -1.1941 -0.0005 8 1 3.0796 -1.1970 0.1023 9 6 1.2579 -2.4952 -0.1447 10 1 0.5748 -2.6177 0.6958 11 6 2.2545 -3.6564 -0.1663 12 6 1.4954 -4.9804 -0.2796 13 6 0.7026 -4.9991 -1.5902 14 7 -0.1537 -3.8064 -1.6422 15 6 -1.4789 -3.9213 -1.8591 16 8 -2.1607 -2.9260 -1.9906 17 6 -2.1088 -5.2742 -1.9375 18 8 -2.1289 -5.8738 -2.9923 19 7 -2.6543 -5.8284 -0.8368 20 6 -3.3718 -7.1081 -0.9194 21 6 -2.6031 -8.1761 -0.1313 22 6 -2.1987 -7.5951 1.2007 23 6 -1.8078 -8.2524 2.3093 24 7 -1.5372 -7.3294 3.2593 25 1 -1.2338 -7.5126 4.1623 26 7 -1.7728 -6.0599 2.7099 27 6 -2.1688 -6.2190 1.4816 28 6 -2.5484 -5.1599 0.4727 29 6 0.4632 -2.4855 -1.4594 30 1 -0.4850 0.8400 0.0004 31 1 2.8389 -3.6504 0.7537 32 1 2.9218 -3.5460 -1.0211 33 1 0.8097 -5.0797 0.5618 34 1 2.2044 -5.8081 -0.2714 35 1 0.0834 -5.8955 -1.6300 36 1 1.3902 -4.9924 -2.4359 37 1 -4.3700 -6.9930 -0.4968 38 1 -3.4517 -7.4134 -1.9626 39 1 -1.7130 -8.4704 -0.6874 40 1 -3.2397 -9.0466 0.0273 41 1 -1.7256 -9.3235 2.4196 42 1 -1.7785 -4.3892 0.4354 43 1 -3.5065 -4.7151 0.7416 44 1 1.1335 -2.2767 -2.2932 45 1 -0.3139 -1.7225 -1.4126 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328192899.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:06:38 Heat of formation + Delta-G solvation = 14.583670 kcal Electronic energy + Delta-G solvation = -30177.332500 eV Core-core repulsion = 26196.541302 eV Total energy + Delta-G solvation = -3980.791198 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.67248 -40.42386 -38.51554 -36.78463 -36.39949 -33.42680 -32.80460 -31.88210 -31.80661 -29.89471 -29.12024 -26.97541 -25.80558 -25.06759 -23.81112 -22.02391 -21.85564 -21.23247 -20.05283 -19.22572 -18.18936 -17.84852 -17.26409 -16.65486 -16.21192 -16.04536 -15.57682 -14.82731 -14.66927 -14.54526 -14.24843 -13.90119 -13.82208 -13.67515 -13.59347 -13.21222 -13.05587 -12.82316 -12.66200 -12.34373 -12.21178 -12.10919 -11.98759 -11.43683 -11.06357 -11.03538 -10.93449 -10.65724 -10.54089 -10.41426 -10.27218 -9.97641 -9.63738 -9.31763 -9.17332 -8.91873 -8.89326 -8.60937 -8.42359 -7.93025 -6.04136 -4.10394 1.73338 2.28157 2.44279 2.53081 2.71757 3.06658 3.30560 3.38703 3.40403 3.63183 4.29224 4.40497 4.45142 4.54264 4.84057 4.97177 5.17064 5.23641 5.26714 5.28272 5.34442 5.43863 5.47188 5.59535 5.63388 5.73418 5.80088 5.86108 5.95995 6.12803 6.24773 6.26326 6.38267 6.52264 6.59586 6.78506 6.90675 7.00125 7.06748 7.09155 7.13822 7.50952 7.53206 7.80367 7.88601 7.91245 8.02859 8.30793 8.49306 8.92476 9.54750 11.02548 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014220 B = 0.004176 C = 0.003751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.558826 B = 6703.144757 C = 7463.705290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.065 3.935 3 Si 0.891 3.109 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.059 0.941 9 C 0.042 3.958 10 H 0.032 0.968 11 C -0.111 4.111 12 C -0.130 4.130 13 C 0.109 3.891 14 N -0.586 5.586 15 C 0.504 3.496 16 O -0.509 6.509 17 C 0.526 3.474 18 O -0.520 6.520 19 N -0.597 5.597 20 C 0.111 3.889 21 C -0.054 4.054 22 C -0.233 4.233 23 C 0.063 3.937 24 N -0.481 5.481 25 H 0.440 0.560 26 N -0.265 5.265 27 C 0.070 3.930 28 C 0.188 3.812 29 C 0.111 3.889 30 H 0.264 0.736 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.100 0.900 39 H 0.075 0.925 40 H 0.083 0.917 41 H 0.176 0.824 42 H 0.111 0.889 43 H 0.099 0.901 44 H 0.050 0.950 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.421 -19.685 3.943 20.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.138 4.138 3 Si 0.719 3.281 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.078 0.922 9 C 0.023 3.977 10 H 0.050 0.950 11 C -0.148 4.148 12 C -0.168 4.168 13 C -0.015 4.015 14 N -0.320 5.320 15 C 0.285 3.715 16 O -0.384 6.384 17 C 0.309 3.691 18 O -0.394 6.394 19 N -0.332 5.332 20 C -0.011 4.011 21 C -0.093 4.093 22 C -0.244 4.244 23 C -0.083 4.083 24 N -0.190 5.190 25 H 0.284 0.716 26 N -0.088 5.088 27 C -0.100 4.100 28 C 0.064 3.936 29 C -0.008 4.008 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.118 0.882 39 H 0.093 0.907 40 H 0.101 0.899 41 H 0.194 0.806 42 H 0.129 0.871 43 H 0.117 0.883 44 H 0.068 0.932 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -4.687 -18.488 4.185 19.527 hybrid contribution 0.532 0.058 0.031 0.536 sum -4.156 -18.430 4.216 19.357 Atomic orbital electron populations 1.69894 1.05775 1.26979 1.49033 1.25031 0.94853 0.99258 0.94705 0.86593 0.79891 0.83571 0.78059 1.20625 1.21215 1.19915 1.21057 0.93522 0.90200 1.51211 0.92237 1.19039 0.93047 0.92604 0.92992 0.95005 1.21635 0.98615 0.93856 1.00715 1.21919 0.99018 0.99288 0.96597 1.21703 0.93951 0.86950 0.98861 1.48591 1.05581 1.10168 1.67641 1.19976 0.83687 0.88734 0.79075 1.90830 1.61987 1.36546 1.49024 1.20695 0.78299 0.86268 0.83804 1.90742 1.58222 1.61830 1.28611 1.48060 1.55159 1.22644 1.07360 1.21647 0.94737 0.82254 1.02497 1.20311 1.00444 0.97296 0.91237 1.19935 1.14425 0.92502 0.97587 1.22052 1.00705 0.96196 0.89391 1.46373 1.55185 1.03591 1.13827 0.71557 1.77135 1.21053 1.00733 1.09860 1.22323 0.99456 0.95064 0.93128 1.20085 1.03762 0.91344 0.78438 1.22534 0.98840 0.80716 0.98752 0.92580 0.92855 0.92991 0.92148 0.92138 0.91538 0.91188 0.90495 0.88207 0.90699 0.89907 0.80643 0.87093 0.88321 0.93206 0.86068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.00 11.54 55.43 0.64 -24.36 16 2 C 0.06 1.75 5.23 -17.82 -0.09 1.66 16 3 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 7 C -0.52 -13.79 8.58 -34.44 -0.30 -14.08 16 8 H 0.06 1.55 7.75 -52.49 -0.41 1.14 16 9 C 0.04 1.01 2.25 -91.42 -0.21 0.81 16 10 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 11 C -0.11 -2.16 5.10 -26.69 -0.14 -2.29 16 12 C -0.13 -2.13 6.08 -26.61 -0.16 -2.29 16 13 C 0.11 1.82 6.35 -3.71 -0.02 1.79 16 14 N -0.59 -11.91 2.97 -173.01 -0.51 -12.43 16 15 C 0.50 10.56 5.58 -11.59 -0.06 10.50 16 16 O -0.51 -12.45 16.53 5.49 0.09 -12.36 16 17 C 0.53 9.38 5.48 -11.59 -0.06 9.32 16 18 O -0.52 -9.95 16.52 5.50 0.09 -9.86 16 19 N -0.60 -8.58 2.92 -173.99 -0.51 -9.09 16 20 C 0.11 1.19 6.31 -3.60 -0.02 1.17 16 21 C -0.05 -0.48 6.44 -27.62 -0.18 -0.65 16 22 C -0.23 -2.48 5.93 -104.97 -0.62 -3.10 16 23 C 0.06 0.52 11.94 -17.34 -0.21 0.31 16 24 N -0.48 -4.64 7.37 30.37 0.22 -4.41 16 25 H 0.44 2.78 8.96 -182.42 -1.64 1.14 16 26 N -0.27 -3.72 12.68 33.78 0.43 -3.29 16 27 C 0.07 0.94 7.21 -82.30 -0.59 0.35 16 28 C 0.19 2.76 6.62 -4.49 -0.03 2.73 16 29 C 0.11 2.63 5.39 -3.49 -0.02 2.61 16 30 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 31 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.07 1.04 6.31 -51.92 -0.33 0.71 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.10 1.10 7.02 -51.93 -0.36 0.73 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.18 0.74 8.06 -52.49 -0.42 0.31 16 42 H 0.11 1.94 6.60 -51.93 -0.34 1.60 16 43 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 44 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 45 H 0.12 3.33 5.27 -51.92 -0.27 3.05 16 LS Contribution 363.72 15.07 5.48 5.48 Total: -1.00 -33.46 363.72 -9.36 -42.82 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -7.56 Total: 2.72 kcal Atomic # 6 Polarization: 11.53 SS G_CDS: -2.72 Total: 8.82 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: 0.27 Total: -53.57 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: 0.18 Total: -22.22 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.46 -9.36 -42.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328192899.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.407 kcal (2) G-P(sol) polarization free energy of solvation -33.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds