Wall clock time and date at job start Sat Apr 11 2020 03:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00222 * 2 1 4 4 H 1.48503 * 109.47388 * 274.99995 * 3 2 1 5 5 H 1.48506 * 109.47215 * 34.99839 * 3 2 1 6 6 H 1.48500 * 109.47594 * 154.99939 * 3 2 1 7 7 C 1.37880 * 120.00078 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00364 * 186.31147 * 7 2 1 9 9 C 1.50704 * 119.99909 * 6.31405 * 7 2 1 10 10 H 1.08999 * 109.49892 * 297.99728 * 9 7 2 11 11 C 1.53040 * 109.49698 * 177.93140 * 9 7 2 12 12 C 1.53040 * 109.53814 * 178.68398 * 11 9 7 13 13 C 1.53189 * 109.31046 * 61.36270 * 12 11 9 14 14 N 1.46922 * 108.78147 * 305.36497 * 13 12 11 15 15 C 1.34776 * 120.63215 * 233.58809 * 14 13 12 16 16 O 1.21353 * 119.99733 * 185.01828 * 15 14 13 17 17 C 1.49446 * 120.00246 * 5.01717 * 15 14 13 18 18 O 1.21347 * 119.99823 * 273.95475 * 17 15 14 19 19 N 1.34772 * 119.99875 * 93.95055 * 17 15 14 20 20 C 1.46944 * 120.65519 * 175.05976 * 19 17 15 21 21 C 1.53379 * 109.43960 * 114.26819 * 20 19 17 22 22 C 1.50839 * 108.65754 * 45.84085 * 21 20 19 23 23 C 1.34676 * 128.08040 * 162.40628 * 22 21 20 24 24 N 1.35183 * 107.66087 * 179.73316 * 23 22 21 25 25 H 0.97006 * 126.00271 * 180.02562 * 24 23 22 26 26 N 1.40324 * 107.99779 * 0.03897 * 24 23 22 27 27 C 1.30031 * 108.07382 * 0.03748 * 26 24 23 28 28 C 1.47410 * 120.66381 * 355.33967 * 19 17 15 29 29 C 1.46922 * 118.73448 * 53.86190 * 14 13 12 30 30 H 0.96997 * 119.99991 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.45669 * 58.66324 * 11 9 7 32 32 H 1.09001 * 109.44619 * 298.69690 * 11 9 7 33 33 H 1.09001 * 109.49306 * 301.41732 * 12 11 9 34 34 H 1.08990 * 109.49812 * 181.31893 * 12 11 9 35 35 H 1.09011 * 109.58662 * 185.57522 * 13 12 11 36 36 H 1.08997 * 109.70421 * 65.22664 * 13 12 11 37 37 H 1.09006 * 109.47566 * 234.24601 * 20 19 17 38 38 H 1.08997 * 109.48210 * 354.26435 * 20 19 17 39 39 H 1.09005 * 109.58069 * 286.10425 * 21 20 19 40 40 H 1.09001 * 109.76409 * 165.69298 * 21 20 19 41 41 H 1.07993 * 126.17024 * 359.71380 * 23 22 21 42 42 H 1.09003 * 109.93648 * 344.31835 * 28 19 17 43 43 H 1.09001 * 109.94094 * 105.45772 * 28 19 17 44 44 H 1.09000 * 109.58898 * 65.92839 * 29 14 13 45 45 H 1.09007 * 109.58905 * 186.35571 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3911 2.1074 -1.3947 5 1 1.5035 2.6199 0.8030 6 1 3.5956 1.4120 0.5917 7 6 2.0045 -1.1941 -0.0005 8 1 3.0796 -1.1970 0.1023 9 6 1.2579 -2.4952 -0.1447 10 1 0.5748 -2.6177 0.6958 11 6 2.2545 -3.6564 -0.1663 12 6 1.4954 -4.9804 -0.2796 13 6 0.7026 -4.9991 -1.5902 14 7 -0.1537 -3.8064 -1.6422 15 6 -1.4789 -3.9213 -1.8591 16 8 -2.1607 -2.9260 -1.9906 17 6 -2.1088 -5.2742 -1.9375 18 8 -2.1289 -5.8738 -2.9923 19 7 -2.6543 -5.8284 -0.8368 20 6 -3.3718 -7.1081 -0.9194 21 6 -2.6031 -8.1761 -0.1313 22 6 -2.1987 -7.5951 1.2007 23 6 -1.8078 -8.2524 2.3093 24 7 -1.5372 -7.3294 3.2593 25 1 -1.2338 -7.5126 4.1623 26 7 -1.7728 -6.0599 2.7099 27 6 -2.1688 -6.2190 1.4816 28 6 -2.5484 -5.1599 0.4727 29 6 0.4632 -2.4855 -1.4594 30 1 -0.4850 0.8400 0.0004 31 1 2.8389 -3.6504 0.7537 32 1 2.9218 -3.5460 -1.0211 33 1 0.8097 -5.0797 0.5618 34 1 2.2044 -5.8081 -0.2714 35 1 0.0834 -5.8955 -1.6300 36 1 1.3902 -4.9924 -2.4359 37 1 -4.3700 -6.9930 -0.4968 38 1 -3.4517 -7.4134 -1.9626 39 1 -1.7130 -8.4704 -0.6874 40 1 -3.2397 -9.0466 0.0273 41 1 -1.7256 -9.3235 2.4196 42 1 -1.7785 -4.3892 0.4354 43 1 -3.5065 -4.7151 0.7416 44 1 1.1335 -2.2767 -2.2932 45 1 -0.3139 -1.7225 -1.4126 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328192899.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:06:37 Heat of formation + Delta-G solvation = -8.943737 kcal Electronic energy + Delta-G solvation = -30178.352725 eV Core-core repulsion = 26196.541302 eV Total energy + Delta-G solvation = -3981.811423 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.60762 -41.82569 -40.01656 -38.47892 -37.59531 -35.34896 -33.75004 -33.52766 -32.77070 -31.68559 -30.01875 -28.28699 -27.30207 -26.81843 -25.04693 -23.60633 -23.17411 -22.08100 -21.39304 -20.68247 -19.52785 -18.73375 -18.65782 -18.23357 -17.97596 -17.49313 -16.72488 -16.46626 -15.97880 -15.91030 -15.68295 -15.32306 -15.12320 -14.98682 -14.64661 -14.53750 -14.41785 -14.22818 -14.06417 -13.91511 -13.66115 -13.21028 -13.03585 -12.89063 -12.78506 -12.62700 -12.33517 -12.27017 -12.19823 -11.91633 -11.72251 -11.51886 -11.19729 -10.97841 -10.62913 -10.52220 -10.49819 -10.06267 -9.66262 -9.36287 -8.12992 -6.26821 0.86708 0.97905 0.98870 1.41579 1.43337 1.48621 1.53308 1.68833 1.91248 2.24515 2.42965 3.00276 3.17358 3.40662 3.77378 3.85375 3.98513 4.01873 4.11216 4.20975 4.23078 4.41865 4.49081 4.49962 4.61423 4.67921 4.70171 4.71630 4.73959 4.90716 5.00132 5.03055 5.08994 5.13714 5.18003 5.25136 5.31131 5.37797 5.55437 5.57683 5.81838 5.84081 5.91722 6.25791 6.30217 6.48492 6.55091 6.68813 6.77607 6.86662 7.42515 8.92316 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014220 B = 0.004176 C = 0.003751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.558826 B = 6703.144757 C = 7463.705290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.014 3.986 3 Si 0.954 3.046 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.262 1.262 7 C -0.535 4.535 8 H 0.064 0.936 9 C 0.044 3.956 10 H -0.008 1.008 11 C -0.104 4.104 12 C -0.116 4.116 13 C 0.106 3.894 14 N -0.586 5.586 15 C 0.496 3.504 16 O -0.558 6.558 17 C 0.534 3.466 18 O -0.534 6.534 19 N -0.581 5.581 20 C 0.102 3.898 21 C -0.043 4.043 22 C -0.251 4.251 23 C 0.090 3.910 24 N -0.471 5.471 25 H 0.454 0.546 26 N -0.317 5.317 27 C 0.053 3.947 28 C 0.190 3.810 29 C 0.124 3.876 30 H 0.261 0.739 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.046 0.954 34 H 0.102 0.898 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.075 0.925 40 H 0.122 0.878 41 H 0.228 0.772 42 H 0.073 0.927 43 H 0.102 0.898 44 H 0.047 0.953 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.373 -23.478 4.517 24.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.185 4.185 3 Si 0.780 3.220 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.186 1.186 7 C -0.573 4.573 8 H 0.082 0.918 9 C 0.025 3.975 10 H 0.010 0.990 11 C -0.142 4.142 12 C -0.154 4.154 13 C -0.016 4.016 14 N -0.318 5.318 15 C 0.279 3.721 16 O -0.437 6.437 17 C 0.317 3.683 18 O -0.411 6.411 19 N -0.315 5.315 20 C -0.018 4.018 21 C -0.081 4.081 22 C -0.263 4.263 23 C -0.057 4.057 24 N -0.181 5.181 25 H 0.301 0.699 26 N -0.141 5.141 27 C -0.116 4.116 28 C 0.065 3.935 29 C 0.003 3.997 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.065 0.935 34 H 0.121 0.879 35 H 0.101 0.899 36 H 0.107 0.893 37 H 0.114 0.886 38 H 0.119 0.881 39 H 0.093 0.907 40 H 0.140 0.860 41 H 0.244 0.756 42 H 0.091 0.909 43 H 0.120 0.880 44 H 0.066 0.934 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.618 -22.337 4.799 23.132 hybrid contribution 0.183 1.187 -0.038 1.201 sum -3.435 -21.151 4.762 21.950 Atomic orbital electron populations 1.70074 1.07394 1.27390 1.50295 1.25830 0.95482 1.02739 0.94491 0.85597 0.78971 0.79411 0.78033 1.20283 1.21368 1.18637 1.21472 0.93872 0.91456 1.50547 0.91817 1.18930 0.93213 0.93925 0.91438 0.98965 1.21520 0.97755 0.93635 1.01267 1.21815 0.99069 0.98777 0.95752 1.21977 0.93976 0.85771 0.99826 1.48584 1.06077 1.10224 1.66951 1.20672 0.83630 0.89929 0.77895 1.90786 1.63053 1.38672 1.51167 1.19924 0.78880 0.84892 0.84614 1.90733 1.59435 1.61783 1.29106 1.48055 1.53905 1.23513 1.06062 1.22053 0.95636 0.80748 1.03355 1.20318 1.00815 0.97327 0.89685 1.20210 1.15704 0.91101 0.99292 1.22785 0.97412 0.97900 0.87583 1.46417 1.54257 1.02617 1.14788 0.69924 1.77044 1.22843 1.03535 1.10634 1.22103 1.00588 0.95970 0.92900 1.19893 1.02788 0.91490 0.79323 1.22018 0.97433 0.81751 0.98538 0.93027 0.92615 0.91969 0.93507 0.87933 0.89884 0.89307 0.88575 0.88138 0.90694 0.86019 0.75601 0.90899 0.88014 0.93448 0.90280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.85 11.54 21.45 0.25 -54.60 16 2 C 0.01 0.81 5.23 84.66 0.44 1.25 16 3 Si 0.95 44.03 29.54 68.60 2.03 46.05 16 4 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 5 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 6 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 7 C -0.54 -29.08 8.58 25.60 0.22 -28.86 16 8 H 0.06 3.33 7.75 -2.91 -0.02 3.31 16 9 C 0.04 2.20 2.25 -11.31 -0.03 2.17 16 10 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 11 C -0.10 -4.00 5.10 30.62 0.16 -3.85 16 12 C -0.12 -3.62 6.08 30.67 0.19 -3.43 16 13 C 0.11 3.43 6.35 86.36 0.55 3.98 16 14 N -0.59 -24.72 2.97 -819.64 -2.43 -27.15 16 15 C 0.50 21.89 5.58 87.27 0.49 22.38 16 16 O -0.56 -29.45 16.53 -3.26 -0.05 -29.51 16 17 C 0.53 19.32 5.48 87.27 0.48 19.80 16 18 O -0.53 -20.24 16.52 -3.24 -0.05 -20.29 16 19 N -0.58 -16.62 2.92 -822.76 -2.41 -19.02 16 20 C 0.10 1.96 6.31 86.42 0.55 2.51 16 21 C -0.04 -0.58 6.44 30.02 0.19 -0.39 16 22 C -0.25 -4.55 5.93 -20.09 -0.12 -4.67 16 23 C 0.09 1.09 11.94 83.36 1.00 2.09 16 24 N -0.47 -7.84 7.37 -57.84 -0.43 -8.27 16 25 H 0.45 4.52 8.96 -213.17 -1.91 2.61 16 26 N -0.32 -8.76 12.68 -47.05 -0.60 -9.36 16 27 C 0.05 1.39 7.21 43.50 0.31 1.70 16 28 C 0.19 5.80 6.62 85.59 0.57 6.37 16 29 C 0.12 6.19 5.39 86.51 0.47 6.66 16 30 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 31 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.08 2.45 6.31 -2.38 -0.02 2.43 16 36 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 37 H 0.10 1.51 8.14 -2.38 -0.02 1.49 16 38 H 0.10 1.98 7.02 -2.39 -0.02 1.96 16 39 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 40 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.23 0.34 8.06 -2.91 -0.02 0.32 16 42 H 0.07 2.79 6.60 -2.39 -0.02 2.78 16 43 H 0.10 2.93 8.14 -2.39 -0.02 2.91 16 44 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 45 H 0.08 4.68 5.27 -2.38 -0.01 4.67 16 Total: -1.00 -79.15 363.72 0.88 -78.27 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -0.88 Total: 16.17 kcal Atomic # 6 Polarization: 22.26 SS G_CDS: 5.46 Total: 27.71 kcal Atomic # 7 Polarization: -112.79 SS G_CDS: -5.61 Total: -118.40 kcal Atomic # 8 Polarization: -49.69 SS G_CDS: -0.11 Total: -49.80 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Total: -79.15 0.88 -78.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328192899.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.322 kcal (2) G-P(sol) polarization free energy of solvation -79.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds