Wall clock time and date at job start Sat Apr 11 2020 03:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 120.00212 * 2 1 4 4 H 1.48498 * 109.47394 * 240.00451 * 3 2 1 5 5 H 1.48497 * 109.47124 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46856 * 120.00394 * 3 2 1 7 7 C 1.38809 * 119.99691 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99996 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00320 * 359.97438 * 7 2 1 10 10 C 1.46505 * 120.00127 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.46850 * 180.02562 * 10 9 7 12 12 C 1.53785 * 113.61362 * 174.99944 * 11 10 9 13 13 C 1.53780 * 87.08229 * 139.97858 * 12 11 10 14 14 N 1.46505 * 113.61595 * 89.11536 * 13 12 11 15 15 C 1.34773 * 119.99777 * 156.52801 * 14 13 12 16 16 O 1.21547 * 120.00518 * 0.02562 * 15 14 13 17 17 C 1.47868 * 119.99727 * 180.02562 * 15 14 13 18 18 C 1.39615 * 120.10746 * 0.02562 * 17 15 14 19 19 C 1.37987 * 119.98749 * 179.97438 * 18 17 15 20 20 C 1.38254 * 120.22478 * 359.72726 * 19 18 17 21 21 C 1.38942 * 120.22451 * 0.55137 * 20 19 18 22 22 N 1.39970 * 120.00084 * 179.72399 * 21 20 19 23 23 C 1.34781 * 120.00201 * 214.83303 * 22 21 20 24 24 N 1.34771 * 120.00295 * 175.38918 * 23 22 21 25 25 O 1.21590 * 119.99575 * 355.37975 * 23 22 21 26 26 C 1.38635 * 119.99723 * 359.44851 * 21 20 19 27 27 C 1.53779 * 87.17430 * 334.52346 * 13 12 11 28 28 H 0.97000 * 119.99408 * 359.97438 * 1 2 3 29 29 H 0.96996 * 119.99903 * 0.02562 * 9 7 2 30 30 H 1.08992 * 109.47113 * 60.00155 * 10 9 7 31 31 H 1.09001 * 109.46790 * 299.99712 * 10 9 7 32 32 H 1.09005 * 112.85569 * 43.79852 * 11 10 9 33 33 H 1.08994 * 113.61389 * 25.42600 * 12 11 10 34 34 H 1.08999 * 113.61035 * 254.52605 * 12 11 10 35 35 H 1.08998 * 113.61564 * 219.93322 * 13 12 11 36 36 H 0.97000 * 119.99511 * 336.53178 * 14 13 12 37 37 H 1.07994 * 120.00719 * 0.02562 * 18 17 15 38 38 H 1.08002 * 119.88013 * 180.02562 * 19 18 17 39 39 H 1.08001 * 119.89008 * 180.27344 * 20 19 18 40 40 H 0.97001 * 120.00393 * 34.82578 * 22 21 20 41 41 H 0.96995 * 120.00009 * 179.97438 * 24 23 22 42 42 H 0.97004 * 119.99520 * 359.72109 * 24 23 22 43 43 H 1.08003 * 120.10653 * 180.25295 * 26 21 20 44 44 H 1.09000 * 113.61429 * 140.01853 * 27 13 12 45 45 H 1.08999 * 113.61810 * 270.92885 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6962 1.2125 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0637 -4.8197 -0.0012 12 6 1.7303 -6.2001 -0.1241 13 6 0.7043 -6.7000 0.9066 14 7 -0.5390 -7.1907 0.3067 15 6 -1.3117 -8.0666 0.9790 16 8 -0.9774 -8.4493 2.0832 17 6 -2.5662 -8.5623 0.3733 18 6 -2.9522 -8.1247 -0.8951 19 6 -4.1231 -8.5892 -1.4582 20 6 -4.9146 -9.4922 -0.7729 21 6 -4.5422 -9.9293 0.4923 22 7 -5.3500 -10.8391 1.1843 23 6 -5.4591 -10.7591 2.5253 24 7 -6.3077 -11.5742 3.1823 25 8 -4.7916 -9.9515 3.1424 26 6 -3.3676 -9.4686 1.0669 27 6 0.6154 -5.2493 1.4088 28 1 -0.4849 0.8401 0.0004 29 1 0.3555 -2.3880 -0.0005 30 1 2.6846 -3.7146 0.8894 31 1 2.6846 -3.7146 -0.8906 32 1 0.2378 -4.6701 -0.6967 33 1 2.7584 -6.2221 0.2371 34 1 1.6166 -6.6537 -1.1086 35 1 1.1222 -7.3907 1.6390 36 1 -0.8059 -6.8850 -0.5743 37 1 -2.3339 -7.4234 -1.4357 38 1 -4.4198 -8.2499 -2.4397 39 1 -5.8278 -9.8556 -1.2206 40 1 -5.8314 -11.5272 0.6988 41 1 -6.3859 -11.5169 4.1473 42 1 -6.8430 -12.2158 2.6895 43 1 -3.0743 -9.8104 2.0485 44 1 -0.3976 -4.9357 1.6607 45 1 1.3393 -5.0118 2.1883 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328954817.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:06:40 Heat of formation + Delta-G solvation = -0.906820 kcal Electronic energy + Delta-G solvation = -27110.367887 eV Core-core repulsion = 23128.904971 eV Total energy + Delta-G solvation = -3981.462916 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.06778 -40.20794 -38.91325 -37.83126 -35.13386 -34.50068 -34.12689 -33.08373 -31.38201 -30.73170 -29.58535 -26.82630 -25.43427 -24.49951 -23.57146 -23.10973 -21.45070 -21.40233 -20.82185 -19.07535 -18.77539 -18.65325 -17.30987 -17.01463 -16.48748 -16.01646 -15.82693 -15.63387 -15.12331 -14.90757 -14.75968 -14.42732 -14.41585 -13.92353 -13.88374 -13.58919 -13.31661 -13.00722 -12.67590 -12.30662 -12.21224 -12.05969 -11.90655 -11.56190 -10.99341 -10.87953 -10.77637 -10.49575 -10.42728 -10.31006 -10.17704 -10.04962 -9.92824 -9.76965 -9.55569 -9.24999 -8.91219 -8.78391 -8.52323 -6.85029 -5.70882 -2.98932 0.59631 1.06419 2.27055 2.58238 2.86933 3.10930 3.47765 3.51762 3.53075 3.68149 3.90932 4.47363 4.57631 4.62665 4.72822 4.82345 4.86991 4.89785 5.10467 5.17761 5.18728 5.21936 5.55980 5.63129 5.77511 5.82784 5.91378 5.96320 6.00567 6.06779 6.08419 6.12485 6.17639 6.27965 6.32626 6.38336 6.39465 6.49746 6.64546 6.71800 6.84380 7.00075 7.34512 7.51554 7.74441 8.08467 8.22442 8.48438 9.59144 10.18909 10.53365 11.52058 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018133 B = 0.001994 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.781034 B =14039.661876 C =14315.345314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.238 4.238 8 H 0.069 0.931 9 N -0.732 5.732 10 C 0.162 3.838 11 C -0.113 4.113 12 C -0.137 4.137 13 C 0.116 3.884 14 N -0.704 5.704 15 C 0.559 3.441 16 O -0.531 6.531 17 C -0.113 4.113 18 C -0.100 4.100 19 C -0.106 4.106 20 C -0.123 4.123 21 C 0.150 3.850 22 N -0.685 5.685 23 C 0.701 3.299 24 N -0.861 5.861 25 O -0.565 6.565 26 C -0.061 4.061 27 C -0.139 4.139 28 H 0.255 0.745 29 H 0.383 0.617 30 H 0.020 0.980 31 H 0.018 0.982 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.069 0.931 35 H 0.099 0.901 36 H 0.400 0.600 37 H 0.130 0.870 38 H 0.135 0.865 39 H 0.129 0.871 40 H 0.408 0.592 41 H 0.419 0.581 42 H 0.398 0.602 43 H 0.155 0.845 44 H 0.069 0.931 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.964 -29.106 -2.846 32.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.212 4.212 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.370 4.370 8 H 0.087 0.913 9 N -0.376 5.376 10 C 0.035 3.965 11 C -0.132 4.132 12 C -0.176 4.176 13 C 0.011 3.989 14 N -0.355 5.355 15 C 0.347 3.653 16 O -0.408 6.408 17 C -0.117 4.117 18 C -0.120 4.120 19 C -0.125 4.125 20 C -0.144 4.144 21 C 0.055 3.945 22 N -0.334 5.334 23 C 0.400 3.600 24 N -0.430 5.430 25 O -0.440 6.440 26 C -0.082 4.082 27 C -0.178 4.178 28 H 0.065 0.935 29 H 0.217 0.783 30 H 0.038 0.962 31 H 0.036 0.964 32 H 0.105 0.895 33 H 0.113 0.887 34 H 0.087 0.913 35 H 0.117 0.883 36 H 0.236 0.764 37 H 0.147 0.853 38 H 0.152 0.848 39 H 0.147 0.853 40 H 0.243 0.757 41 H 0.252 0.748 42 H 0.226 0.774 43 H 0.173 0.827 44 H 0.088 0.912 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -12.980 -28.539 -1.596 31.393 hybrid contribution -0.702 0.567 -0.559 1.061 sum -13.682 -27.973 -2.155 31.214 Atomic orbital electron populations 1.69653 1.05089 1.25662 1.57903 1.24743 0.95536 0.97676 1.03221 0.86261 0.78492 0.83594 0.77808 1.21327 1.21733 1.21312 1.19203 0.90991 0.84303 1.42476 0.91302 1.42343 1.05845 0.99984 1.89391 1.20638 0.93020 0.85227 0.97647 1.22811 0.99056 0.94191 0.97133 1.23306 0.98878 0.96573 0.98813 1.21952 0.84244 0.96083 0.96624 1.45584 1.23314 1.45402 1.21209 1.18198 0.83332 0.78738 0.85078 1.90786 1.72439 1.58171 1.19449 1.19855 0.96171 1.00335 0.95353 1.21353 0.97158 0.99244 0.94218 1.20878 0.94363 0.96961 1.00263 1.21034 1.00309 0.98575 0.94493 1.17333 0.90692 0.94022 0.92414 1.42470 1.50376 1.34579 1.05973 1.15997 0.80836 0.81639 0.81551 1.42951 1.46156 1.41928 1.11974 1.91079 1.47269 1.39300 1.66380 1.21427 0.90638 0.95282 1.00884 1.23465 1.02572 0.94106 0.97623 0.93535 0.78324 0.96199 0.96429 0.89452 0.88651 0.91254 0.88265 0.76391 0.85258 0.84758 0.85303 0.75691 0.74771 0.77438 0.82744 0.91232 0.89079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.87 13.06 55.49 0.72 -28.15 16 2 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 3 Si 0.91 22.88 29.55 -169.99 -5.02 17.86 16 4 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 6 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 7 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.73 -18.98 5.60 -59.91 -0.34 -19.32 16 10 C 0.16 3.30 6.10 -4.04 -0.02 3.28 16 11 C -0.11 -1.81 3.65 -89.66 -0.33 -2.14 16 12 C -0.14 -1.72 7.38 -25.92 -0.19 -1.91 16 13 C 0.12 1.59 4.29 -67.12 -0.29 1.30 16 14 N -0.70 -8.98 5.21 -53.95 -0.28 -9.26 16 15 C 0.56 8.31 7.77 -12.32 -0.10 8.22 16 16 O -0.53 -9.93 15.96 5.32 0.08 -9.84 16 17 C -0.11 -1.42 5.87 -104.99 -0.62 -2.04 16 18 C -0.10 -0.94 9.54 -39.16 -0.37 -1.31 16 19 C -0.11 -0.80 10.02 -39.67 -0.40 -1.20 16 20 C -0.12 -0.89 9.96 -39.32 -0.39 -1.28 16 21 C 0.15 1.43 6.29 -83.73 -0.53 0.90 16 22 N -0.68 -4.66 5.34 -14.25 -0.08 -4.74 16 23 C 0.70 6.38 8.68 -86.92 -0.75 5.62 16 24 N -0.86 -3.54 8.88 27.63 0.25 -3.30 16 25 O -0.57 -8.32 14.61 5.29 0.08 -8.24 16 26 C -0.06 -0.79 8.24 -38.98 -0.32 -1.11 16 27 C -0.14 -2.21 7.45 -25.77 -0.19 -2.41 16 28 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 29 H 0.38 10.46 7.67 -40.82 -0.31 10.14 16 30 H 0.02 0.41 7.85 -51.93 -0.41 0.01 16 31 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 33 H 0.10 1.13 8.10 -51.93 -0.42 0.71 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.10 1.44 7.50 -51.93 -0.39 1.05 16 36 H 0.40 4.13 6.73 -40.82 -0.27 3.86 16 37 H 0.13 0.96 6.40 -52.49 -0.34 0.62 16 38 H 0.13 0.67 8.06 -52.49 -0.42 0.24 16 39 H 0.13 0.54 8.06 -52.49 -0.42 0.11 16 40 H 0.41 1.04 8.84 -40.82 -0.36 0.68 16 41 H 0.42 1.53 8.93 -40.82 -0.36 1.16 16 42 H 0.40 0.16 8.85 -40.82 -0.36 -0.21 16 43 H 0.16 2.43 5.81 -52.48 -0.30 2.13 16 44 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.09 1.47 7.90 -51.93 -0.41 1.06 16 LS Contribution 379.68 15.07 5.72 5.72 Total: -1.00 -39.22 379.68 -9.64 -48.86 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: -6.03 Total: 12.04 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: -4.75 Total: -1.64 kcal Atomic # 7 Polarization: -65.03 SS G_CDS: 0.28 Total: -64.76 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: 0.16 Total: -18.09 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.86 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -39.22 -9.64 -48.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328954817.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.953 kcal (2) G-P(sol) polarization free energy of solvation -39.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds