Wall clock time and date at job start Sat Apr 11 2020 03:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 120.00212 * 2 1 4 4 H 1.48498 * 109.47394 * 240.00451 * 3 2 1 5 5 H 1.48497 * 109.47124 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46856 * 120.00394 * 3 2 1 7 7 C 1.38809 * 119.99691 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99996 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00320 * 359.97438 * 7 2 1 10 10 C 1.46505 * 120.00127 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.46850 * 180.02562 * 10 9 7 12 12 C 1.53785 * 113.61362 * 174.99944 * 11 10 9 13 13 C 1.53780 * 87.08229 * 139.97858 * 12 11 10 14 14 N 1.46505 * 113.61595 * 89.11536 * 13 12 11 15 15 C 1.34773 * 119.99777 * 156.52801 * 14 13 12 16 16 O 1.21547 * 120.00518 * 0.02562 * 15 14 13 17 17 C 1.47868 * 119.99727 * 180.02562 * 15 14 13 18 18 C 1.39615 * 120.10746 * 0.02562 * 17 15 14 19 19 C 1.37987 * 119.98749 * 179.97438 * 18 17 15 20 20 C 1.38254 * 120.22478 * 359.72726 * 19 18 17 21 21 C 1.38942 * 120.22451 * 0.55137 * 20 19 18 22 22 N 1.39970 * 120.00084 * 179.72399 * 21 20 19 23 23 C 1.34781 * 120.00201 * 214.83303 * 22 21 20 24 24 N 1.34771 * 120.00295 * 175.38918 * 23 22 21 25 25 O 1.21590 * 119.99575 * 355.37975 * 23 22 21 26 26 C 1.38635 * 119.99723 * 359.44851 * 21 20 19 27 27 C 1.53779 * 87.17430 * 334.52346 * 13 12 11 28 28 H 0.97000 * 119.99408 * 359.97438 * 1 2 3 29 29 H 0.96996 * 119.99903 * 0.02562 * 9 7 2 30 30 H 1.08992 * 109.47113 * 60.00155 * 10 9 7 31 31 H 1.09001 * 109.46790 * 299.99712 * 10 9 7 32 32 H 1.09005 * 112.85569 * 43.79852 * 11 10 9 33 33 H 1.08994 * 113.61389 * 25.42600 * 12 11 10 34 34 H 1.08999 * 113.61035 * 254.52605 * 12 11 10 35 35 H 1.08998 * 113.61564 * 219.93322 * 13 12 11 36 36 H 0.97000 * 119.99511 * 336.53178 * 14 13 12 37 37 H 1.07994 * 120.00719 * 0.02562 * 18 17 15 38 38 H 1.08002 * 119.88013 * 180.02562 * 19 18 17 39 39 H 1.08001 * 119.89008 * 180.27344 * 20 19 18 40 40 H 0.97001 * 120.00393 * 34.82578 * 22 21 20 41 41 H 0.96995 * 120.00009 * 179.97438 * 24 23 22 42 42 H 0.97004 * 119.99520 * 359.72109 * 24 23 22 43 43 H 1.08003 * 120.10653 * 180.25295 * 26 21 20 44 44 H 1.09000 * 113.61429 * 140.01853 * 27 13 12 45 45 H 1.08999 * 113.61810 * 270.92885 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6962 1.2125 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0637 -4.8197 -0.0012 12 6 1.7303 -6.2001 -0.1241 13 6 0.7043 -6.7000 0.9066 14 7 -0.5390 -7.1907 0.3067 15 6 -1.3117 -8.0666 0.9790 16 8 -0.9774 -8.4493 2.0832 17 6 -2.5662 -8.5623 0.3733 18 6 -2.9522 -8.1247 -0.8951 19 6 -4.1231 -8.5892 -1.4582 20 6 -4.9146 -9.4922 -0.7729 21 6 -4.5422 -9.9293 0.4923 22 7 -5.3500 -10.8391 1.1843 23 6 -5.4591 -10.7591 2.5253 24 7 -6.3077 -11.5742 3.1823 25 8 -4.7916 -9.9515 3.1424 26 6 -3.3676 -9.4686 1.0669 27 6 0.6154 -5.2493 1.4088 28 1 -0.4849 0.8401 0.0004 29 1 0.3555 -2.3880 -0.0005 30 1 2.6846 -3.7146 0.8894 31 1 2.6846 -3.7146 -0.8906 32 1 0.2378 -4.6701 -0.6967 33 1 2.7584 -6.2221 0.2371 34 1 1.6166 -6.6537 -1.1086 35 1 1.1222 -7.3907 1.6390 36 1 -0.8059 -6.8850 -0.5743 37 1 -2.3339 -7.4234 -1.4357 38 1 -4.4198 -8.2499 -2.4397 39 1 -5.8278 -9.8556 -1.2206 40 1 -5.8314 -11.5272 0.6988 41 1 -6.3859 -11.5169 4.1473 42 1 -6.8430 -12.2158 2.6895 43 1 -3.0743 -9.8104 2.0485 44 1 -0.3976 -4.9357 1.6607 45 1 1.3393 -5.0118 2.1883 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328954817.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:06:39 Heat of formation + Delta-G solvation = -33.074356 kcal Electronic energy + Delta-G solvation = -27111.762776 eV Core-core repulsion = 23128.904971 eV Total energy + Delta-G solvation = -3982.857805 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.84948 -41.24840 -39.89259 -38.89312 -36.34656 -35.90405 -34.82177 -34.34388 -32.85723 -32.00152 -30.31986 -28.50196 -26.64157 -25.74706 -24.73427 -24.24751 -22.92098 -22.16419 -21.77119 -20.35812 -19.54089 -19.33343 -19.05015 -18.01171 -17.40889 -16.92179 -16.73111 -16.55437 -16.39934 -16.17336 -15.84354 -15.66359 -15.57451 -15.17034 -15.09726 -14.81247 -14.56951 -14.46377 -13.76990 -13.66935 -13.38216 -13.12155 -12.90341 -12.84256 -12.69645 -12.65833 -12.22712 -11.92087 -11.75449 -11.64762 -11.36728 -11.29296 -11.16060 -11.06025 -10.84437 -10.76883 -10.18913 -9.89232 -9.19879 -8.96802 -7.93843 -5.22208 -0.19197 0.32697 1.46928 1.50565 1.56566 1.68723 1.74421 2.01013 2.12136 2.56980 2.87230 3.38607 3.46844 3.56767 3.59113 3.66760 3.93209 3.94389 3.95523 4.12914 4.20413 4.33743 4.42392 4.50474 4.56786 4.75071 4.84061 4.87832 4.89788 4.93691 4.98867 5.13826 5.19865 5.27107 5.29523 5.33028 5.39053 5.42685 5.49831 5.66029 5.81436 5.90674 5.95887 6.28711 6.48128 6.94399 7.14190 7.34454 7.51177 8.12799 8.35160 9.29610 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018133 B = 0.001994 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.781034 B =14039.661876 C =14315.345314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.079 4.079 3 Si 0.975 3.025 4 H -0.275 1.275 5 H -0.295 1.295 6 H -0.280 1.280 7 C -0.246 4.246 8 H 0.075 0.925 9 N -0.745 5.745 10 C 0.160 3.840 11 C -0.108 4.108 12 C -0.112 4.112 13 C 0.122 3.878 14 N -0.691 5.691 15 C 0.554 3.446 16 O -0.584 6.584 17 C -0.139 4.139 18 C -0.099 4.099 19 C -0.099 4.099 20 C -0.104 4.104 21 C 0.142 3.858 22 N -0.668 5.668 23 C 0.693 3.307 24 N -0.837 5.837 25 O -0.629 6.629 26 C -0.091 4.091 27 C -0.146 4.146 28 H 0.251 0.749 29 H 0.373 0.627 30 H 0.019 0.981 31 H 0.026 0.974 32 H 0.088 0.912 33 H 0.108 0.892 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.414 0.586 37 H 0.149 0.851 38 H 0.173 0.827 39 H 0.172 0.828 40 H 0.430 0.570 41 H 0.423 0.577 42 H 0.419 0.581 43 H 0.114 0.886 44 H 0.046 0.954 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.820 -30.270 -5.695 34.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.271 4.271 3 Si 0.804 3.196 4 H -0.201 1.201 5 H -0.222 1.222 6 H -0.206 1.206 7 C -0.378 4.378 8 H 0.093 0.907 9 N -0.388 5.388 10 C 0.033 3.967 11 C -0.127 4.127 12 C -0.150 4.150 13 C 0.017 3.983 14 N -0.343 5.343 15 C 0.343 3.657 16 O -0.465 6.465 17 C -0.143 4.143 18 C -0.119 4.119 19 C -0.117 4.117 20 C -0.124 4.124 21 C 0.047 3.953 22 N -0.319 5.319 23 C 0.391 3.609 24 N -0.406 5.406 25 O -0.509 6.509 26 C -0.112 4.112 27 C -0.185 4.185 28 H 0.059 0.941 29 H 0.204 0.796 30 H 0.037 0.963 31 H 0.043 0.957 32 H 0.106 0.894 33 H 0.127 0.873 34 H 0.115 0.885 35 H 0.109 0.891 36 H 0.253 0.747 37 H 0.166 0.834 38 H 0.190 0.810 39 H 0.189 0.811 40 H 0.270 0.730 41 H 0.257 0.743 42 H 0.251 0.749 43 H 0.132 0.868 44 H 0.065 0.935 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -13.855 -29.789 -4.507 33.161 hybrid contribution -0.496 0.837 0.330 1.027 sum -14.350 -28.952 -4.177 32.582 Atomic orbital electron populations 1.69818 1.06624 1.26083 1.59597 1.25603 0.96457 1.01221 1.03861 0.85186 0.77169 0.79052 0.78206 1.20111 1.22165 1.20605 1.19639 0.91536 0.85537 1.41104 0.90664 1.42580 1.05586 1.01282 1.89320 1.20830 0.93749 0.84478 0.97600 1.22728 0.98595 0.94390 0.96997 1.23211 0.98754 0.93237 0.99791 1.21824 0.85056 0.94367 0.97100 1.45478 1.22717 1.44583 1.21507 1.18728 0.84086 0.78346 0.84512 1.90747 1.73802 1.60144 1.21759 1.19745 0.95559 1.01879 0.97074 1.21609 0.98267 0.99198 0.92783 1.21372 0.93031 0.95898 1.01434 1.21497 1.01161 0.96996 0.92789 1.17487 0.89894 0.94496 0.93430 1.42256 1.49738 1.34661 1.05274 1.16324 0.80871 0.81550 0.82153 1.42727 1.44769 1.40922 1.12206 1.91056 1.49870 1.42180 1.67808 1.21253 0.92919 0.97139 0.99933 1.23488 1.01119 0.96082 0.97768 0.94062 0.79586 0.96308 0.95656 0.89353 0.87326 0.88477 0.89087 0.74748 0.83357 0.81003 0.81066 0.72984 0.74315 0.74917 0.86846 0.93462 0.89661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.82 13.06 21.65 0.28 -60.54 16 2 C -0.08 -4.68 5.50 84.86 0.47 -4.21 16 3 Si 0.98 47.12 29.55 68.60 2.03 49.15 16 4 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 5 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 6 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 7 C -0.25 -14.13 9.99 84.03 0.84 -13.29 16 8 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 9 N -0.75 -38.89 5.60 -343.46 -1.92 -40.81 16 10 C 0.16 6.39 6.10 86.38 0.53 6.91 16 11 C -0.11 -3.38 3.65 -10.17 -0.04 -3.42 16 12 C -0.11 -2.57 7.38 31.12 0.23 -2.34 16 13 C 0.12 3.34 4.29 45.52 0.20 3.54 16 14 N -0.69 -17.69 5.21 -442.89 -2.31 -20.00 16 15 C 0.55 17.44 7.77 86.79 0.67 18.11 16 16 O -0.58 -23.78 15.96 -3.86 -0.06 -23.85 16 17 C -0.14 -3.60 5.87 -20.10 -0.12 -3.71 16 18 C -0.10 -1.68 9.54 22.54 0.22 -1.47 16 19 C -0.10 -1.11 10.02 22.21 0.22 -0.89 16 20 C -0.10 -1.13 9.96 22.44 0.22 -0.91 16 21 C 0.14 2.59 6.29 38.10 0.24 2.83 16 22 N -0.67 -8.35 5.34 -317.27 -1.70 -10.05 16 23 C 0.69 12.82 8.68 179.05 1.55 14.37 16 24 N -0.84 -6.17 8.88 -184.75 -1.64 -7.81 16 25 O -0.63 -20.11 14.61 -4.00 -0.06 -20.17 16 26 C -0.09 -2.51 8.24 22.66 0.19 -2.32 16 27 C -0.15 -4.77 7.45 31.21 0.23 -4.53 16 28 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 29 H 0.37 20.73 7.67 -92.71 -0.71 20.02 16 30 H 0.02 0.77 7.85 -2.39 -0.02 0.75 16 31 H 0.03 0.99 8.14 -2.39 -0.02 0.98 16 32 H 0.09 2.77 8.14 -2.38 -0.02 2.75 16 33 H 0.11 2.29 8.10 -2.39 -0.02 2.27 16 34 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.09 2.71 7.50 -2.39 -0.02 2.69 16 36 H 0.41 8.05 6.73 -92.71 -0.62 7.43 16 37 H 0.15 1.82 6.40 -2.91 -0.02 1.80 16 38 H 0.17 0.71 8.06 -2.91 -0.02 0.69 16 39 H 0.17 0.43 8.06 -2.91 -0.02 0.40 16 40 H 0.43 1.05 8.84 -92.71 -0.82 0.23 16 41 H 0.42 2.91 8.93 -92.71 -0.83 2.08 16 42 H 0.42 -0.56 8.85 -92.71 -0.82 -1.38 16 43 H 0.11 4.07 5.81 -2.91 -0.02 4.06 16 44 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 45 H 0.08 2.85 7.90 -2.39 -0.02 2.83 16 Total: -1.00 -91.35 379.68 -2.44 -93.78 By element: Atomic # 1 Polarization: 34.33 SS G_CDS: -2.71 Total: 31.62 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: 5.65 Total: 8.67 kcal Atomic # 7 Polarization: -131.92 SS G_CDS: -7.29 Total: -139.21 kcal Atomic # 8 Polarization: -43.90 SS G_CDS: -0.12 Total: -44.02 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.15 kcal Total: -91.35 -2.44 -93.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328954817.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.708 kcal (2) G-P(sol) polarization free energy of solvation -91.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds