Wall clock time and date at job start Sat Apr 11 2020 03:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 119.99869 * 2 1 4 4 H 1.48508 * 109.47020 * 240.00065 * 3 2 1 5 5 H 1.48499 * 109.47191 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47102 * 120.00122 * 3 2 1 7 7 C 1.37880 * 119.99990 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99877 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00392 * 359.97438 * 7 2 1 10 10 C 1.52991 * 109.47342 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47301 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.47009 * 305.00255 * 11 10 9 13 13 N 1.46907 * 109.46846 * 64.99645 * 11 10 9 14 14 C 1.50699 * 109.47375 * 184.99886 * 11 10 9 15 15 O 1.21286 * 119.99726 * 260.00375 * 14 11 10 16 16 N 1.34769 * 120.00038 * 79.99948 * 14 11 10 17 17 C 1.39922 * 120.00252 * 175.38906 * 16 14 11 18 18 C 1.38944 * 119.96114 * 35.09889 * 17 16 14 19 19 C 1.38097 * 119.75436 * 179.97438 * 18 17 16 20 20 C 1.38258 * 120.23933 * 359.97438 * 19 18 17 21 21 C 1.38614 * 120.58421 * 0.02562 * 20 19 18 22 22 C 1.38469 * 119.96795 * 214.82693 * 17 16 14 23 23 N 1.39872 * 111.60987 * 179.97438 * 21 20 19 24 24 C 1.34775 * 124.97749 * 179.97438 * 23 21 20 25 25 N 1.34775 * 119.99861 * 179.97438 * 24 23 21 26 26 O 1.21589 * 119.99763 * 359.97438 * 24 23 21 27 27 C 1.46524 * 110.04326 * 0.02562 * 23 21 20 28 28 C 1.51240 * 130.87487 * 180.02562 * 20 19 18 29 29 H 0.97000 * 120.00449 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.46791 * 300.00084 * 9 7 2 31 31 H 1.09003 * 109.47068 * 59.99674 * 9 7 2 32 32 H 1.09003 * 109.47059 * 299.99691 * 10 9 7 33 33 H 1.08994 * 109.47408 * 59.99873 * 10 9 7 34 34 H 1.00893 * 110.99723 * 296.04482 * 13 11 10 35 35 H 1.00894 * 110.99959 * 60.00413 * 13 11 10 36 36 H 0.97008 * 119.99936 * 355.38572 * 16 14 11 37 37 H 1.07993 * 120.12265 * 359.96138 * 18 17 16 38 38 H 1.07996 * 119.87902 * 179.97438 * 19 18 17 39 39 H 1.08001 * 119.88093 * 0.02562 * 22 17 16 40 40 H 0.96996 * 120.00501 * 0.02562 * 25 24 23 41 41 H 0.97001 * 119.99850 * 180.02562 * 25 24 23 42 42 H 1.09002 * 110.29488 * 241.06629 * 27 23 21 43 43 H 1.08999 * 110.37738 * 118.97192 * 27 23 21 44 44 H 1.09001 * 110.41471 * 298.77436 * 28 20 19 45 45 H 1.09001 * 110.41612 * 61.22516 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0027 11 6 1.4804 -4.9871 0.0033 12 1 0.7879 -5.0066 0.8449 13 7 0.7290 -5.1193 -1.2522 14 6 2.4549 -6.1298 0.1281 15 8 2.7871 -6.7538 -0.8574 16 7 2.9574 -6.4581 1.3347 17 6 3.7861 -7.5778 1.4664 18 6 4.6642 -7.9153 0.4439 19 6 5.4806 -9.0210 0.5785 20 6 5.4267 -9.7906 1.7258 21 6 4.5552 -9.4649 2.7534 22 6 3.7344 -8.3451 2.6179 23 7 4.6553 -10.3657 3.8187 24 6 3.9329 -10.3021 4.9547 25 7 4.1109 -11.2266 5.9191 26 8 3.1205 -9.4108 5.1094 27 6 5.6615 -11.3879 3.5192 28 6 6.1970 -11.0300 2.1232 29 1 -0.4851 0.8400 -0.0004 30 1 0.6248 -2.5563 0.8920 31 1 0.6240 -2.5576 -0.8880 32 1 2.8719 -3.6051 -0.8873 33 1 2.8720 -3.6035 0.8926 34 1 0.0242 -4.4013 -1.3290 35 1 1.3490 -5.1040 -2.0479 36 1 2.7446 -5.9181 2.1120 37 1 4.7080 -7.3153 -0.4530 38 1 6.1635 -9.2854 -0.2152 39 1 3.0535 -8.0776 3.4125 40 1 4.7593 -11.9374 5.7959 41 1 3.5907 -11.1810 6.7366 42 1 5.2035 -12.3769 3.5062 43 1 6.4667 -11.3543 4.2532 44 1 6.0006 -11.8409 1.4218 45 1 7.2647 -10.8158 2.1689 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329039025.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:06:42 Heat of formation + Delta-G solvation = -37.181808 kcal Electronic energy + Delta-G solvation = -27648.223030 eV Core-core repulsion = 23665.187112 eV Total energy + Delta-G solvation = -3983.035918 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.51468 -40.21147 -38.86859 -36.86686 -35.45111 -34.49126 -33.83175 -32.85262 -32.14410 -29.91840 -29.78760 -28.74721 -26.42818 -24.30201 -23.96378 -23.19256 -21.67050 -21.11814 -20.38578 -19.71725 -18.56158 -17.74536 -17.36242 -16.93274 -16.73449 -16.22932 -15.68632 -15.46295 -15.04466 -14.83259 -14.71261 -14.48689 -14.26449 -14.06133 -13.80241 -13.51750 -13.14743 -13.07323 -12.83221 -12.78101 -12.38754 -12.18083 -12.02202 -11.71041 -11.41790 -11.09181 -10.92058 -10.81546 -10.70343 -10.49168 -10.20111 -10.00689 -9.96831 -9.76298 -9.30699 -9.22306 -8.43303 -8.39292 -8.20151 -7.78419 -6.07768 -4.11064 1.16821 1.31720 2.13401 2.69718 2.85985 3.13638 3.29523 3.34308 3.36737 3.63737 3.73898 4.08089 4.28254 4.40063 4.53652 4.80997 4.87527 4.98335 5.10266 5.15444 5.28238 5.28650 5.35524 5.39074 5.44620 5.55970 5.62323 5.71954 5.87717 6.13435 6.25985 6.31536 6.35785 6.45281 6.49106 6.50758 6.58236 6.85875 7.04855 7.30793 7.38257 7.51008 7.58079 7.63944 7.88157 7.89618 8.08651 8.30075 8.33071 8.94571 9.53802 11.03091 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017433 B = 0.002240 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.779247 B =12494.879429 C =13024.259618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.525 4.525 8 H 0.054 0.946 9 C 0.024 3.976 10 C -0.139 4.139 11 C 0.076 3.924 12 H 0.101 0.899 13 N -0.830 5.830 14 C 0.528 3.472 15 O -0.517 6.517 16 N -0.675 5.675 17 C 0.183 3.817 18 C -0.140 4.140 19 C -0.060 4.060 20 C -0.162 4.162 21 C 0.178 3.822 22 C -0.161 4.161 23 N -0.566 5.566 24 C 0.716 3.284 25 N -0.859 5.859 26 O -0.568 6.568 27 C 0.099 3.901 28 C -0.079 4.079 29 H 0.262 0.738 30 H 0.019 0.981 31 H 0.018 0.982 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.356 0.644 35 H 0.346 0.654 36 H 0.414 0.586 37 H 0.145 0.855 38 H 0.128 0.872 39 H 0.144 0.856 40 H 0.398 0.602 41 H 0.419 0.581 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.089 0.911 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.967 -26.578 8.955 30.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.563 4.563 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.178 4.178 11 C -0.039 4.039 12 H 0.118 0.882 13 N -0.362 5.362 14 C 0.316 3.684 15 O -0.390 6.390 16 N -0.321 5.321 17 C 0.088 3.912 18 C -0.161 4.161 19 C -0.079 4.079 20 C -0.167 4.167 21 C 0.082 3.918 22 C -0.184 4.184 23 N -0.294 5.294 24 C 0.416 3.584 25 N -0.428 5.428 26 O -0.444 6.444 27 C -0.023 4.023 28 C -0.116 4.116 29 H 0.072 0.928 30 H 0.038 0.962 31 H 0.037 0.963 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.172 0.828 35 H 0.159 0.841 36 H 0.251 0.749 37 H 0.162 0.838 38 H 0.146 0.854 39 H 0.162 0.838 40 H 0.226 0.774 41 H 0.252 0.748 42 H 0.098 0.902 43 H 0.099 0.901 44 H 0.108 0.892 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 12.183 -26.973 8.606 30.823 hybrid contribution 0.816 1.749 0.685 2.048 sum 13.000 -25.224 9.292 29.859 Atomic orbital electron populations 1.69935 1.06017 1.26922 1.50298 1.25012 0.94877 0.99311 0.95109 0.86636 0.79585 0.83002 0.78666 1.20221 1.21224 1.20206 1.21136 0.92990 0.90876 1.51301 0.92743 1.19100 0.93690 0.91029 0.97446 1.22412 0.99949 0.93814 1.01661 1.21484 0.94580 0.91824 0.96002 0.88151 1.58728 1.18433 1.56035 1.03022 1.21118 0.80753 0.84547 0.81979 1.90624 1.59115 1.52532 1.36777 1.43623 1.48701 1.27586 1.12178 1.17413 0.90968 0.88366 0.94481 1.21230 0.95405 0.99204 1.00285 1.20207 0.98397 0.93742 0.95570 1.19841 1.01439 0.99832 0.95541 1.17641 0.96561 0.90966 0.86648 1.20541 1.02998 0.94943 0.99933 1.44871 1.40046 1.28826 1.15636 1.15606 0.80742 0.82596 0.79417 1.42952 1.47209 1.31613 1.21028 1.90989 1.37748 1.36400 1.79289 1.22139 0.90709 0.91415 0.98080 1.20984 1.00124 0.95931 0.94548 0.92804 0.96244 0.96332 0.92487 0.92407 0.82801 0.84076 0.74947 0.83764 0.85409 0.83827 0.77390 0.74824 0.90155 0.90118 0.89212 0.89200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.13 13.29 55.43 0.74 -25.39 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.52 -14.41 9.11 -34.44 -0.31 -14.73 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.02 0.59 4.74 -27.89 -0.13 0.46 16 10 C -0.14 -2.70 4.78 -26.73 -0.13 -2.82 16 11 C 0.08 1.30 3.21 -68.86 -0.22 1.08 16 12 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 13 N -0.83 -14.27 8.94 -5.65 -0.05 -14.32 16 14 C 0.53 8.89 6.92 -10.99 -0.08 8.82 16 15 O -0.52 -9.81 13.68 5.55 0.08 -9.73 16 16 N -0.68 -9.85 5.33 -9.94 -0.05 -9.91 16 17 C 0.18 2.68 6.29 -83.82 -0.53 2.16 16 18 C -0.14 -1.97 8.70 -39.37 -0.34 -2.31 16 19 C -0.06 -0.67 10.03 -39.63 -0.40 -1.07 16 20 C -0.16 -1.69 6.23 -104.21 -0.65 -2.34 16 21 C 0.18 2.20 6.62 -83.58 -0.55 1.64 16 22 C -0.16 -2.28 9.37 -39.02 -0.37 -2.65 16 23 N -0.57 -5.55 3.13 -118.27 -0.37 -5.92 16 24 C 0.72 7.67 8.70 -86.92 -0.76 6.92 16 25 N -0.86 -4.69 8.83 27.63 0.24 -4.45 16 26 O -0.57 -8.61 15.34 5.29 0.08 -8.53 16 27 C 0.10 0.51 6.32 -3.65 -0.02 0.49 16 28 C -0.08 -0.47 6.94 -27.24 -0.19 -0.65 16 29 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 30 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.02 0.46 6.87 -51.93 -0.36 0.11 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.36 6.14 7.55 -39.30 -0.30 5.84 16 35 H 0.35 5.94 8.58 -39.30 -0.34 5.60 16 36 H 0.41 5.20 8.82 -40.82 -0.36 4.84 16 37 H 0.14 2.22 6.22 -52.49 -0.33 1.89 16 38 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 39 H 0.14 2.19 6.27 -52.49 -0.33 1.86 16 40 H 0.40 0.88 7.77 -40.82 -0.32 0.56 16 41 H 0.42 1.81 8.93 -40.82 -0.36 1.44 16 42 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 43 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 44 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 373.04 15.07 5.62 5.62 Total: -1.00 -35.75 373.04 -9.54 -45.29 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: -6.03 Total: 14.44 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: -4.77 Total: -3.47 kcal Atomic # 7 Polarization: -60.49 SS G_CDS: 0.51 Total: -59.99 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: 0.16 Total: -18.27 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.75 -9.54 -45.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329039025.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.106 kcal (2) G-P(sol) polarization free energy of solvation -35.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds