Wall clock time and date at job start Sat Apr 11 2020 03:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 119.99869 * 2 1 4 4 H 1.48508 * 109.47020 * 240.00065 * 3 2 1 5 5 H 1.48499 * 109.47191 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47102 * 120.00122 * 3 2 1 7 7 C 1.37880 * 119.99990 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99877 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00392 * 359.97438 * 7 2 1 10 10 C 1.52991 * 109.47342 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47301 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.47009 * 305.00255 * 11 10 9 13 13 N 1.46907 * 109.46846 * 64.99645 * 11 10 9 14 14 C 1.50699 * 109.47375 * 184.99886 * 11 10 9 15 15 O 1.21286 * 119.99726 * 260.00375 * 14 11 10 16 16 N 1.34769 * 120.00038 * 79.99948 * 14 11 10 17 17 C 1.39922 * 120.00252 * 175.38906 * 16 14 11 18 18 C 1.38944 * 119.96114 * 35.09889 * 17 16 14 19 19 C 1.38097 * 119.75436 * 179.97438 * 18 17 16 20 20 C 1.38258 * 120.23933 * 359.97438 * 19 18 17 21 21 C 1.38614 * 120.58421 * 0.02562 * 20 19 18 22 22 C 1.38469 * 119.96795 * 214.82693 * 17 16 14 23 23 N 1.39872 * 111.60987 * 179.97438 * 21 20 19 24 24 C 1.34775 * 124.97749 * 179.97438 * 23 21 20 25 25 N 1.34775 * 119.99861 * 179.97438 * 24 23 21 26 26 O 1.21589 * 119.99763 * 359.97438 * 24 23 21 27 27 C 1.46524 * 110.04326 * 0.02562 * 23 21 20 28 28 C 1.51240 * 130.87487 * 180.02562 * 20 19 18 29 29 H 0.97000 * 120.00449 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.46791 * 300.00084 * 9 7 2 31 31 H 1.09003 * 109.47068 * 59.99674 * 9 7 2 32 32 H 1.09003 * 109.47059 * 299.99691 * 10 9 7 33 33 H 1.08994 * 109.47408 * 59.99873 * 10 9 7 34 34 H 1.00893 * 110.99723 * 296.04482 * 13 11 10 35 35 H 1.00894 * 110.99959 * 60.00413 * 13 11 10 36 36 H 0.97008 * 119.99936 * 355.38572 * 16 14 11 37 37 H 1.07993 * 120.12265 * 359.96138 * 18 17 16 38 38 H 1.07996 * 119.87902 * 179.97438 * 19 18 17 39 39 H 1.08001 * 119.88093 * 0.02562 * 22 17 16 40 40 H 0.96996 * 120.00501 * 0.02562 * 25 24 23 41 41 H 0.97001 * 119.99850 * 180.02562 * 25 24 23 42 42 H 1.09002 * 110.29488 * 241.06629 * 27 23 21 43 43 H 1.08999 * 110.37738 * 118.97192 * 27 23 21 44 44 H 1.09001 * 110.41471 * 298.77436 * 28 20 19 45 45 H 1.09001 * 110.41612 * 61.22516 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0027 11 6 1.4804 -4.9871 0.0033 12 1 0.7879 -5.0066 0.8449 13 7 0.7290 -5.1193 -1.2522 14 6 2.4549 -6.1298 0.1281 15 8 2.7871 -6.7538 -0.8574 16 7 2.9574 -6.4581 1.3347 17 6 3.7861 -7.5778 1.4664 18 6 4.6642 -7.9153 0.4439 19 6 5.4806 -9.0210 0.5785 20 6 5.4267 -9.7906 1.7258 21 6 4.5552 -9.4649 2.7534 22 6 3.7344 -8.3451 2.6179 23 7 4.6553 -10.3657 3.8187 24 6 3.9329 -10.3021 4.9547 25 7 4.1109 -11.2266 5.9191 26 8 3.1205 -9.4108 5.1094 27 6 5.6615 -11.3879 3.5192 28 6 6.1970 -11.0300 2.1232 29 1 -0.4851 0.8400 -0.0004 30 1 0.6248 -2.5563 0.8920 31 1 0.6240 -2.5576 -0.8880 32 1 2.8719 -3.6051 -0.8873 33 1 2.8720 -3.6035 0.8926 34 1 0.0242 -4.4013 -1.3290 35 1 1.3490 -5.1040 -2.0479 36 1 2.7446 -5.9181 2.1120 37 1 4.7080 -7.3153 -0.4530 38 1 6.1635 -9.2854 -0.2152 39 1 3.0535 -8.0776 3.4125 40 1 4.7593 -11.9374 5.7959 41 1 3.5907 -11.1810 6.7366 42 1 5.2035 -12.3769 3.5062 43 1 6.4667 -11.3543 4.2532 44 1 6.0006 -11.8409 1.4218 45 1 7.2647 -10.8158 2.1689 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329039025.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:06:42 Heat of formation + Delta-G solvation = -65.326359 kcal Electronic energy + Delta-G solvation = -27649.443469 eV Core-core repulsion = 23665.187112 eV Total energy + Delta-G solvation = -3984.256357 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.32738 -41.40167 -39.79385 -37.90213 -36.97119 -35.50011 -34.86945 -34.57316 -32.91310 -31.71834 -30.66275 -29.70105 -27.99372 -25.85134 -24.88379 -24.00112 -22.95079 -22.15672 -21.67989 -20.85211 -19.38867 -19.02426 -18.39618 -18.14583 -17.79169 -17.33428 -16.73761 -16.50724 -16.33818 -16.12088 -16.05699 -15.65741 -15.44507 -15.21676 -14.84678 -14.72417 -14.53038 -14.29650 -14.05018 -13.75620 -13.52825 -13.40456 -12.98189 -12.88757 -12.81287 -12.61767 -12.54781 -12.27571 -11.82294 -11.78731 -11.71825 -11.40884 -11.33189 -10.87230 -10.84551 -10.63932 -10.56511 -9.70600 -9.36861 -8.66509 -8.22033 -6.32560 0.19610 0.33720 1.39181 1.40940 1.41287 1.48748 1.51303 1.93083 2.00527 2.39420 2.79919 3.11112 3.11600 3.57367 3.60280 3.67085 3.70551 4.06411 4.09189 4.18017 4.23146 4.24334 4.31333 4.42542 4.59359 4.62920 4.63451 4.79709 4.96817 5.06040 5.06614 5.14046 5.24014 5.34929 5.44335 5.45220 5.50742 5.63892 5.79381 5.84717 5.86197 6.02068 6.07054 6.19982 6.35604 6.46073 6.71038 6.82575 7.03353 7.36416 7.41426 8.88597 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017433 B = 0.002240 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.779247 B =12494.879429 C =13024.259618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.004 3.996 3 Si 0.960 3.040 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.546 4.546 8 H 0.055 0.945 9 C 0.030 3.970 10 C -0.121 4.121 11 C 0.084 3.916 12 H 0.109 0.891 13 N -0.828 5.828 14 C 0.530 3.470 15 O -0.540 6.540 16 N -0.667 5.667 17 C 0.159 3.841 18 C -0.159 4.159 19 C -0.057 4.057 20 C -0.151 4.151 21 C 0.162 3.838 22 C -0.177 4.177 23 N -0.568 5.568 24 C 0.705 3.295 25 N -0.832 5.832 26 O -0.624 6.624 27 C 0.091 3.909 28 C -0.075 4.075 29 H 0.264 0.736 30 H 0.001 0.999 31 H 0.005 0.995 32 H 0.050 0.950 33 H 0.065 0.935 34 H 0.355 0.645 35 H 0.346 0.654 36 H 0.421 0.579 37 H 0.126 0.874 38 H 0.157 0.843 39 H 0.125 0.875 40 H 0.417 0.583 41 H 0.426 0.574 42 H 0.108 0.892 43 H 0.110 0.890 44 H 0.112 0.888 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.650 -28.978 9.702 34.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.194 4.194 3 Si 0.785 3.215 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.584 4.584 8 H 0.074 0.926 9 C -0.007 4.007 10 C -0.161 4.161 11 C -0.031 4.031 12 H 0.127 0.873 13 N -0.360 5.360 14 C 0.319 3.681 15 O -0.416 6.416 16 N -0.312 5.312 17 C 0.064 3.936 18 C -0.180 4.180 19 C -0.076 4.076 20 C -0.155 4.155 21 C 0.065 3.935 22 C -0.201 4.201 23 N -0.295 5.295 24 C 0.406 3.594 25 N -0.402 5.402 26 O -0.504 6.504 27 C -0.029 4.029 28 C -0.112 4.112 29 H 0.073 0.927 30 H 0.019 0.981 31 H 0.023 0.977 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.171 0.829 35 H 0.160 0.840 36 H 0.258 0.742 37 H 0.144 0.856 38 H 0.175 0.825 39 H 0.142 0.858 40 H 0.249 0.751 41 H 0.260 0.740 42 H 0.126 0.874 43 H 0.128 0.872 44 H 0.130 0.870 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 14.924 -29.454 9.399 34.331 hybrid contribution 0.031 2.359 0.516 2.415 sum 14.955 -27.095 9.916 32.498 Atomic orbital electron populations 1.70053 1.07506 1.27858 1.51242 1.25881 0.95753 1.03036 0.94737 0.85581 0.78360 0.78562 0.79040 1.19458 1.20807 1.19342 1.21589 0.93377 0.92415 1.51003 0.92636 1.18966 0.94014 0.91941 0.95807 1.22153 0.98852 0.93426 1.01692 1.21375 0.94551 0.90844 0.96341 0.87278 1.58734 1.18387 1.55818 1.03106 1.20914 0.80565 0.84316 0.82348 1.90609 1.59929 1.53442 1.37651 1.43475 1.48289 1.27783 1.11663 1.17543 0.91924 0.88798 0.95290 1.21217 0.96685 1.00555 0.99563 1.20509 0.97823 0.92568 0.96704 1.20333 1.00483 1.00719 0.94004 1.17948 0.96424 0.90830 0.88275 1.20470 1.03893 0.96377 0.99326 1.45033 1.40613 1.29127 1.14686 1.15935 0.80433 0.82794 0.80279 1.42714 1.47015 1.30632 1.19880 1.90956 1.40161 1.38802 1.80476 1.22591 0.90602 0.91244 0.98470 1.21183 1.00792 0.94025 0.95177 0.92712 0.98099 0.97665 0.93087 0.91659 0.82938 0.84016 0.74160 0.85570 0.82520 0.85751 0.75074 0.74010 0.87392 0.87171 0.87029 0.86758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.12 13.29 21.45 0.28 -54.83 16 2 C 0.00 0.25 5.46 84.66 0.46 0.71 16 3 Si 0.96 43.99 29.54 68.60 2.03 46.01 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 6 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 7 C -0.55 -30.38 9.11 25.60 0.23 -30.15 16 8 H 0.06 3.00 7.74 -2.91 -0.02 2.98 16 9 C 0.03 1.49 4.74 29.84 0.14 1.63 16 10 C -0.12 -4.83 4.78 30.59 0.15 -4.69 16 11 C 0.08 2.95 3.21 44.17 0.14 3.09 16 12 H 0.11 3.63 8.14 -2.39 -0.02 3.61 16 13 N -0.83 -29.22 8.94 -171.78 -1.54 -30.76 16 14 C 0.53 18.45 6.92 87.66 0.61 19.06 16 15 O -0.54 -21.13 13.68 -3.05 -0.04 -21.17 16 16 N -0.67 -20.40 5.33 -303.77 -1.62 -22.02 16 17 C 0.16 4.86 6.29 38.07 0.24 5.10 16 18 C -0.16 -4.55 8.70 22.41 0.19 -4.35 16 19 C -0.06 -1.20 10.03 22.24 0.22 -0.97 16 20 C -0.15 -2.78 6.23 -19.60 -0.12 -2.91 16 21 C 0.16 3.88 6.62 38.25 0.25 4.13 16 22 C -0.18 -5.24 9.37 22.63 0.21 -5.03 16 23 N -0.57 -9.97 3.13 -646.37 -2.02 -12.00 16 24 C 0.71 14.37 8.70 179.06 1.56 15.93 16 25 N -0.83 -7.13 8.83 -184.75 -1.63 -8.76 16 26 O -0.62 -19.48 15.34 -4.00 -0.06 -19.54 16 27 C 0.09 0.53 6.32 86.62 0.55 1.08 16 28 C -0.07 -0.54 6.94 30.27 0.21 -0.33 16 29 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 30 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 31 H 0.01 0.26 6.87 -2.39 -0.02 0.25 16 32 H 0.05 2.08 8.14 -2.39 -0.02 2.07 16 33 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 34 H 0.36 12.63 7.55 -89.70 -0.68 11.96 16 35 H 0.35 12.20 8.58 -89.70 -0.77 11.43 16 36 H 0.42 11.24 8.82 -92.70 -0.82 10.42 16 37 H 0.13 4.04 6.22 -2.91 -0.02 4.02 16 38 H 0.16 2.28 8.06 -2.91 -0.02 2.26 16 39 H 0.12 4.11 6.27 -2.91 -0.02 4.10 16 40 H 0.42 0.28 7.77 -92.71 -0.72 -0.44 16 41 H 0.43 2.87 8.93 -92.71 -0.83 2.04 16 42 H 0.11 0.08 8.14 -2.39 -0.02 0.06 16 43 H 0.11 0.04 8.14 -2.39 -0.02 0.02 16 44 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 45 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 Total: -1.00 -80.81 373.04 -2.27 -83.08 By element: Atomic # 1 Polarization: 40.40 SS G_CDS: -2.72 Total: 37.68 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: 5.05 Total: 2.30 kcal Atomic # 7 Polarization: -121.84 SS G_CDS: -6.52 Total: -128.36 kcal Atomic # 8 Polarization: -40.60 SS G_CDS: -0.10 Total: -40.71 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Total: -80.81 -2.27 -83.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329039025.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.749 kcal (2) G-P(sol) polarization free energy of solvation -80.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds