Wall clock time and date at job start Sat Apr 11 2020 03:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00194 * 2 1 4 4 H 1.48509 * 109.47272 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46997 * 299.99614 * 3 2 1 6 6 H 1.48498 * 109.47607 * 59.99893 * 3 2 1 7 7 C 1.37881 * 119.99929 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99908 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99920 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47447 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47489 * 179.97438 * 10 9 7 12 12 H 1.08995 * 109.47378 * 54.99640 * 11 10 9 13 13 N 1.46905 * 109.46778 * 294.99732 * 11 10 9 14 14 C 1.50702 * 109.47056 * 175.00081 * 11 10 9 15 15 O 1.21286 * 119.99804 * 100.00226 * 14 11 10 16 16 N 1.34773 * 119.99890 * 280.00022 * 14 11 10 17 17 C 1.39928 * 119.99850 * 185.27707 * 16 14 11 18 18 C 1.38934 * 119.96491 * 33.35442 * 17 16 14 19 19 C 1.38093 * 119.75595 * 179.97438 * 18 17 16 20 20 C 1.38263 * 120.24285 * 0.02562 * 19 18 17 21 21 C 1.38615 * 120.57631 * 359.97438 * 20 19 18 22 22 C 1.38472 * 119.96169 * 213.37573 * 17 16 14 23 23 N 1.39865 * 111.60966 * 179.97438 * 21 20 19 24 24 C 1.34776 * 124.98103 * 180.02562 * 23 21 20 25 25 N 1.34780 * 120.00161 * 180.02562 * 24 23 21 26 26 O 1.21590 * 119.99905 * 359.97438 * 24 23 21 27 27 C 1.46530 * 110.04032 * 359.97438 * 23 21 20 28 28 C 1.51235 * 130.88176 * 179.66258 * 20 19 18 29 29 H 0.97003 * 119.99647 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.47431 * 59.99875 * 9 7 2 31 31 H 1.09006 * 109.47415 * 299.99858 * 9 7 2 32 32 H 1.09002 * 109.46921 * 59.99546 * 10 9 7 33 33 H 1.08996 * 109.47144 * 300.00577 * 10 9 7 34 34 H 1.00890 * 111.00328 * 299.99578 * 13 11 10 35 35 H 1.00906 * 110.99838 * 63.95910 * 13 11 10 36 36 H 0.97002 * 119.99830 * 5.27332 * 16 14 11 37 37 H 1.07999 * 120.12304 * 359.97438 * 18 17 16 38 38 H 1.07999 * 119.87903 * 180.02562 * 19 18 17 39 39 H 1.07997 * 119.88391 * 0.02562 * 22 17 16 40 40 H 0.96998 * 119.99954 * 359.97438 * 25 24 23 41 41 H 0.96997 * 119.99930 * 180.02562 * 25 24 23 42 42 H 1.09001 * 110.29844 * 118.93824 * 27 23 21 43 43 H 1.09004 * 110.29422 * 240.96794 * 27 23 21 44 44 H 1.08993 * 110.41369 * 298.82654 * 28 20 19 45 45 H 1.09005 * 110.40752 * 61.26561 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0018 11 6 1.4801 -4.9871 0.0025 12 1 0.7883 -5.0077 -0.8395 13 7 0.7279 -5.1175 1.2576 14 6 2.4548 -6.1299 -0.1201 15 8 2.7861 -6.7528 0.8665 16 7 2.9582 -6.4599 -1.3259 17 6 3.7757 -7.5878 -1.4580 18 6 3.5531 -8.7034 -0.6603 19 6 4.3622 -9.8144 -0.7946 20 6 5.3910 -9.8191 -1.7182 21 6 5.6237 -8.7127 -2.5202 22 6 4.8059 -7.5908 -2.3832 23 7 6.7054 -8.9197 -3.3823 24 6 7.1644 -8.0211 -4.2757 25 7 8.2172 -8.3274 -5.0595 26 8 6.6281 -6.9344 -4.3753 27 6 7.2673 -10.2564 -3.1709 28 6 6.4111 -10.8826 -2.0582 29 1 -0.4850 0.8401 -0.0004 30 1 0.6246 -2.5571 -0.8897 31 1 0.6239 -2.5567 0.8903 32 1 2.8711 -3.6039 0.8922 33 1 2.8725 -3.6048 -0.8876 34 1 1.3473 -5.1013 2.0537 35 1 0.0230 -4.3994 1.3330 36 1 2.7537 -5.9155 -2.1023 37 1 2.7503 -8.7017 0.0621 38 1 4.1907 -10.6828 -0.1758 39 1 4.9766 -6.7217 -3.0012 40 1 8.6448 -9.1944 -4.9804 41 1 8.5478 -7.6805 -5.7023 42 1 7.1945 -10.8460 -4.0848 43 1 8.3067 -10.1833 -2.8507 44 1 7.0255 -11.1121 -1.1877 45 1 5.9152 -11.7823 -2.4225 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329039026.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:06:45 Heat of formation + Delta-G solvation = -37.750010 kcal Electronic energy + Delta-G solvation = -27723.274495 eV Core-core repulsion = 23740.213939 eV Total energy + Delta-G solvation = -3983.060557 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.50590 -40.20464 -38.85884 -36.86603 -35.44661 -34.48165 -33.81775 -32.84550 -32.13785 -29.90211 -29.79929 -28.74124 -26.42389 -24.31292 -23.92637 -23.22112 -21.67241 -21.11741 -20.32397 -19.73315 -18.55986 -17.74327 -17.33188 -16.93796 -16.72283 -16.24129 -15.66615 -15.43350 -14.96053 -14.86733 -14.79800 -14.43669 -14.21097 -14.06510 -13.75876 -13.51825 -13.21875 -13.07064 -12.85851 -12.74552 -12.37926 -12.20448 -11.94563 -11.72671 -11.41592 -11.09290 -10.93691 -10.84620 -10.64553 -10.47618 -10.17805 -10.00439 -9.96937 -9.77727 -9.29805 -9.20267 -8.43059 -8.36762 -8.23187 -7.77031 -6.07354 -4.10141 1.16339 1.31804 2.14876 2.70002 2.88223 3.13047 3.28096 3.36003 3.40660 3.65391 3.74856 4.08811 4.28578 4.41326 4.54316 4.80283 4.87015 4.98655 5.11406 5.14742 5.28320 5.29093 5.34967 5.39479 5.44705 5.54802 5.63174 5.72720 5.87531 6.13705 6.27456 6.31021 6.35920 6.45962 6.49152 6.52270 6.58759 6.87198 7.04121 7.32455 7.38164 7.52044 7.57627 7.64251 7.87653 7.90327 8.10828 8.30536 8.33625 8.96032 9.54913 11.03623 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013919 B = 0.002530 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.214500 B =11063.039652 C =12779.429460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.140 4.140 11 C 0.076 3.924 12 H 0.101 0.899 13 N -0.830 5.830 14 C 0.527 3.473 15 O -0.516 6.516 16 N -0.676 5.676 17 C 0.186 3.814 18 C -0.141 4.141 19 C -0.058 4.058 20 C -0.164 4.164 21 C 0.179 3.821 22 C -0.162 4.162 23 N -0.567 5.567 24 C 0.715 3.285 25 N -0.859 5.859 26 O -0.567 6.567 27 C 0.099 3.901 28 C -0.078 4.078 29 H 0.261 0.739 30 H 0.019 0.981 31 H 0.018 0.982 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.346 0.654 35 H 0.356 0.644 36 H 0.414 0.586 37 H 0.141 0.859 38 H 0.128 0.872 39 H 0.145 0.855 40 H 0.398 0.602 41 H 0.419 0.581 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.090 0.910 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.464 -25.595 -8.656 30.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.179 4.179 11 C -0.039 4.039 12 H 0.119 0.881 13 N -0.362 5.362 14 C 0.316 3.684 15 O -0.389 6.389 16 N -0.321 5.321 17 C 0.090 3.910 18 C -0.162 4.162 19 C -0.078 4.078 20 C -0.168 4.168 21 C 0.084 3.916 22 C -0.185 4.185 23 N -0.294 5.294 24 C 0.416 3.584 25 N -0.428 5.428 26 O -0.443 6.443 27 C -0.023 4.023 28 C -0.115 4.115 29 H 0.071 0.929 30 H 0.038 0.962 31 H 0.037 0.963 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.159 0.841 35 H 0.172 0.828 36 H 0.250 0.750 37 H 0.159 0.841 38 H 0.146 0.854 39 H 0.162 0.838 40 H 0.226 0.774 41 H 0.252 0.748 42 H 0.099 0.901 43 H 0.098 0.902 44 H 0.108 0.892 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 13.900 -25.843 -8.263 30.485 hybrid contribution 1.275 2.104 -0.576 2.527 sum 15.175 -23.739 -8.839 29.529 Atomic orbital electron populations 1.69958 1.06012 1.26671 1.50588 1.25011 0.94874 0.99327 0.95124 0.86527 0.80158 0.83661 0.77634 1.19730 1.20931 1.20956 1.21221 0.93101 0.90863 1.50929 0.92631 1.19107 0.93679 0.91072 0.97420 1.22416 0.99948 0.93839 1.01731 1.21480 0.94490 0.91916 0.95984 0.88103 1.58747 1.18428 1.56001 1.03051 1.21121 0.80738 0.84689 0.81898 1.90645 1.58575 1.53072 1.36634 1.43671 1.49244 1.27240 1.11989 1.17399 0.90662 0.86882 0.96037 1.21075 1.02051 0.91369 1.01724 1.20170 0.93239 0.98047 0.96310 1.19830 1.00528 0.95667 1.00761 1.17653 0.88363 0.94748 0.90885 1.20557 0.95275 0.99107 1.03590 1.44880 1.31677 1.15812 1.37041 1.15616 0.80818 0.83127 0.78849 1.42954 1.34714 1.21822 1.43314 1.91001 1.60162 1.21941 1.71154 1.22142 0.98409 0.81993 0.99802 1.20973 0.95374 0.97343 0.97846 0.92941 0.96229 0.96341 0.92515 0.92391 0.84059 0.82804 0.74951 0.84139 0.85405 0.83771 0.77410 0.74801 0.90114 0.90166 0.89205 0.89228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.26 13.29 55.43 0.74 -25.52 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.59 4.74 -27.89 -0.13 0.46 16 10 C -0.14 -2.78 4.78 -26.73 -0.13 -2.90 16 11 C 0.08 1.30 3.21 -68.86 -0.22 1.08 16 12 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16 13 N -0.83 -14.10 8.94 -5.65 -0.05 -14.15 16 14 C 0.53 8.88 6.81 -10.99 -0.07 8.81 16 15 O -0.52 -9.85 13.93 5.55 0.08 -9.78 16 16 N -0.68 -9.87 5.34 -9.94 -0.05 -9.92 16 17 C 0.19 2.72 6.26 -83.82 -0.53 2.20 16 18 C -0.14 -1.95 8.66 -39.38 -0.34 -2.29 16 19 C -0.06 -0.65 10.03 -39.63 -0.40 -1.05 16 20 C -0.16 -1.70 6.23 -104.21 -0.65 -2.35 16 21 C 0.18 2.25 6.62 -83.58 -0.55 1.69 16 22 C -0.16 -2.34 9.36 -39.02 -0.37 -2.70 16 23 N -0.57 -5.69 3.13 -118.27 -0.37 -6.06 16 24 C 0.72 7.95 8.70 -86.92 -0.76 7.19 16 25 N -0.86 -5.02 8.83 27.64 0.24 -4.78 16 26 O -0.57 -8.91 15.34 5.29 0.08 -8.83 16 27 C 0.10 0.52 6.32 -3.65 -0.02 0.50 16 28 C -0.08 -0.46 6.93 -27.24 -0.19 -0.65 16 29 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 30 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.02 0.46 6.87 -51.93 -0.36 0.11 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.35 5.95 8.58 -39.30 -0.34 5.61 16 35 H 0.36 6.07 7.55 -39.29 -0.30 5.78 16 36 H 0.41 5.20 8.82 -40.82 -0.36 4.84 16 37 H 0.14 2.11 6.42 -52.49 -0.34 1.77 16 38 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 39 H 0.14 2.27 6.27 -52.49 -0.33 1.95 16 40 H 0.40 1.00 7.77 -40.82 -0.32 0.68 16 41 H 0.42 2.00 8.93 -40.82 -0.36 1.63 16 42 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 43 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 44 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 373.31 15.07 5.63 5.63 Total: -1.00 -36.12 373.31 -9.54 -45.66 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: -6.04 Total: 14.46 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: -4.77 Total: -3.33 kcal Atomic # 7 Polarization: -60.93 SS G_CDS: 0.51 Total: -60.43 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: 0.16 Total: -18.61 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.12 -9.54 -45.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329039026.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.913 kcal (2) G-P(sol) polarization free energy of solvation -36.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds