Wall clock time and date at job start Sat Apr 11 2020 03:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00194 * 2 1 4 4 H 1.48509 * 109.47272 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46997 * 299.99614 * 3 2 1 6 6 H 1.48498 * 109.47607 * 59.99893 * 3 2 1 7 7 C 1.37881 * 119.99929 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99908 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99920 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47447 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47489 * 179.97438 * 10 9 7 12 12 H 1.08995 * 109.47378 * 54.99640 * 11 10 9 13 13 N 1.46905 * 109.46778 * 294.99732 * 11 10 9 14 14 C 1.50702 * 109.47056 * 175.00081 * 11 10 9 15 15 O 1.21286 * 119.99804 * 100.00226 * 14 11 10 16 16 N 1.34773 * 119.99890 * 280.00022 * 14 11 10 17 17 C 1.39928 * 119.99850 * 185.27707 * 16 14 11 18 18 C 1.38934 * 119.96491 * 33.35442 * 17 16 14 19 19 C 1.38093 * 119.75595 * 179.97438 * 18 17 16 20 20 C 1.38263 * 120.24285 * 0.02562 * 19 18 17 21 21 C 1.38615 * 120.57631 * 359.97438 * 20 19 18 22 22 C 1.38472 * 119.96169 * 213.37573 * 17 16 14 23 23 N 1.39865 * 111.60966 * 179.97438 * 21 20 19 24 24 C 1.34776 * 124.98103 * 180.02562 * 23 21 20 25 25 N 1.34780 * 120.00161 * 180.02562 * 24 23 21 26 26 O 1.21590 * 119.99905 * 359.97438 * 24 23 21 27 27 C 1.46530 * 110.04032 * 359.97438 * 23 21 20 28 28 C 1.51235 * 130.88176 * 179.66258 * 20 19 18 29 29 H 0.97003 * 119.99647 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.47431 * 59.99875 * 9 7 2 31 31 H 1.09006 * 109.47415 * 299.99858 * 9 7 2 32 32 H 1.09002 * 109.46921 * 59.99546 * 10 9 7 33 33 H 1.08996 * 109.47144 * 300.00577 * 10 9 7 34 34 H 1.00890 * 111.00328 * 299.99578 * 13 11 10 35 35 H 1.00906 * 110.99838 * 63.95910 * 13 11 10 36 36 H 0.97002 * 119.99830 * 5.27332 * 16 14 11 37 37 H 1.07999 * 120.12304 * 359.97438 * 18 17 16 38 38 H 1.07999 * 119.87903 * 180.02562 * 19 18 17 39 39 H 1.07997 * 119.88391 * 0.02562 * 22 17 16 40 40 H 0.96998 * 119.99954 * 359.97438 * 25 24 23 41 41 H 0.96997 * 119.99930 * 180.02562 * 25 24 23 42 42 H 1.09001 * 110.29844 * 118.93824 * 27 23 21 43 43 H 1.09004 * 110.29422 * 240.96794 * 27 23 21 44 44 H 1.08993 * 110.41369 * 298.82654 * 28 20 19 45 45 H 1.09005 * 110.40752 * 61.26561 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0018 11 6 1.4801 -4.9871 0.0025 12 1 0.7883 -5.0077 -0.8395 13 7 0.7279 -5.1175 1.2576 14 6 2.4548 -6.1299 -0.1201 15 8 2.7861 -6.7528 0.8665 16 7 2.9582 -6.4599 -1.3259 17 6 3.7757 -7.5878 -1.4580 18 6 3.5531 -8.7034 -0.6603 19 6 4.3622 -9.8144 -0.7946 20 6 5.3910 -9.8191 -1.7182 21 6 5.6237 -8.7127 -2.5202 22 6 4.8059 -7.5908 -2.3832 23 7 6.7054 -8.9197 -3.3823 24 6 7.1644 -8.0211 -4.2757 25 7 8.2172 -8.3274 -5.0595 26 8 6.6281 -6.9344 -4.3753 27 6 7.2673 -10.2564 -3.1709 28 6 6.4111 -10.8826 -2.0582 29 1 -0.4850 0.8401 -0.0004 30 1 0.6246 -2.5571 -0.8897 31 1 0.6239 -2.5567 0.8903 32 1 2.8711 -3.6039 0.8922 33 1 2.8725 -3.6048 -0.8876 34 1 1.3473 -5.1013 2.0537 35 1 0.0230 -4.3994 1.3330 36 1 2.7537 -5.9155 -2.1023 37 1 2.7503 -8.7017 0.0621 38 1 4.1907 -10.6828 -0.1758 39 1 4.9766 -6.7217 -3.0012 40 1 8.6448 -9.1944 -4.9804 41 1 8.5478 -7.6805 -5.7023 42 1 7.1945 -10.8460 -4.0848 43 1 8.3067 -10.1833 -2.8507 44 1 7.0255 -11.1121 -1.1877 45 1 5.9152 -11.7823 -2.4225 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329039026.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:06:44 Heat of formation + Delta-G solvation = -66.310100 kcal Electronic energy + Delta-G solvation = -27724.512954 eV Core-core repulsion = 23740.213939 eV Total energy + Delta-G solvation = -3984.299015 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.33177 -41.40320 -39.80262 -37.91054 -36.98101 -35.50448 -34.88077 -34.58133 -32.91555 -31.72279 -30.67255 -29.69957 -27.99923 -25.86648 -24.89009 -24.01103 -22.97881 -22.14460 -21.66529 -20.86832 -19.40491 -19.02015 -18.42136 -18.13270 -17.81203 -17.34102 -16.64022 -16.60155 -16.34952 -16.12094 -16.09142 -15.59307 -15.45390 -15.21382 -14.80458 -14.77351 -14.60518 -14.29545 -14.05043 -13.78814 -13.49342 -13.41366 -12.99047 -12.89201 -12.79435 -12.69875 -12.51618 -12.28276 -11.87624 -11.79715 -11.72900 -11.42070 -11.31449 -10.90822 -10.86040 -10.64846 -10.58401 -9.70419 -9.37636 -8.65977 -8.24010 -6.34070 0.18726 0.33431 1.36505 1.37736 1.42323 1.48990 1.50879 1.92806 1.99643 2.37929 2.80374 3.09574 3.10605 3.57101 3.59847 3.66435 3.70352 4.06246 4.08502 4.17783 4.22087 4.23651 4.30959 4.41301 4.59015 4.60819 4.63565 4.78363 4.97048 5.04128 5.06760 5.13468 5.23714 5.33986 5.43606 5.43929 5.50234 5.62633 5.78105 5.83673 5.85375 6.01652 6.06345 6.19093 6.35011 6.45562 6.70347 6.81014 7.02781 7.34943 7.40618 8.86989 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013919 B = 0.002530 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.214500 B =11063.039652 C =12779.429460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.006 3.994 3 Si 0.959 3.041 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.546 4.546 8 H 0.052 0.948 9 C 0.031 3.969 10 C -0.124 4.124 11 C 0.085 3.915 12 H 0.114 0.886 13 N -0.826 5.826 14 C 0.530 3.470 15 O -0.541 6.541 16 N -0.667 5.667 17 C 0.162 3.838 18 C -0.157 4.157 19 C -0.055 4.055 20 C -0.152 4.152 21 C 0.162 3.838 22 C -0.180 4.180 23 N -0.568 5.568 24 C 0.705 3.295 25 N -0.832 5.832 26 O -0.625 6.625 27 C 0.091 3.909 28 C -0.074 4.074 29 H 0.265 0.735 30 H 0.003 0.997 31 H 0.007 0.993 32 H 0.046 0.954 33 H 0.061 0.939 34 H 0.345 0.655 35 H 0.355 0.645 36 H 0.421 0.579 37 H 0.125 0.875 38 H 0.159 0.841 39 H 0.122 0.878 40 H 0.417 0.583 41 H 0.426 0.574 42 H 0.111 0.889 43 H 0.107 0.893 44 H 0.111 0.889 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.827 -28.120 -9.299 34.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.192 4.192 3 Si 0.784 3.216 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.584 4.584 8 H 0.070 0.930 9 C -0.006 4.006 10 C -0.164 4.164 11 C -0.030 4.030 12 H 0.132 0.868 13 N -0.358 5.358 14 C 0.319 3.681 15 O -0.416 6.416 16 N -0.313 5.313 17 C 0.067 3.933 18 C -0.179 4.179 19 C -0.073 4.073 20 C -0.156 4.156 21 C 0.065 3.935 22 C -0.204 4.204 23 N -0.295 5.295 24 C 0.405 3.595 25 N -0.402 5.402 26 O -0.505 6.505 27 C -0.029 4.029 28 C -0.111 4.111 29 H 0.073 0.927 30 H 0.022 0.978 31 H 0.025 0.975 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.159 0.841 35 H 0.171 0.829 36 H 0.258 0.742 37 H 0.143 0.857 38 H 0.177 0.823 39 H 0.140 0.860 40 H 0.249 0.751 41 H 0.260 0.740 42 H 0.129 0.871 43 H 0.125 0.875 44 H 0.129 0.871 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 16.326 -28.441 -8.948 33.992 hybrid contribution 0.613 2.775 -0.434 2.875 sum 16.939 -25.666 -9.382 32.151 Atomic orbital electron populations 1.70058 1.07393 1.27745 1.51310 1.25850 0.95767 1.02922 0.94710 0.85494 0.78905 0.79312 0.77920 1.19277 1.20205 1.20257 1.21635 0.93263 0.92576 1.50917 0.93013 1.18965 0.93945 0.91755 0.95965 1.22169 0.98907 0.93908 1.01373 1.21370 0.94477 0.90583 0.96564 0.86787 1.58754 1.18274 1.55735 1.03006 1.20924 0.80580 0.84410 0.82219 1.90626 1.59508 1.53977 1.37527 1.43527 1.48791 1.27461 1.11506 1.17534 0.91405 0.87147 0.97226 1.21086 1.02711 0.92379 1.01680 1.20496 0.92492 0.97923 0.96426 1.20331 1.00294 0.96235 0.98726 1.17967 0.88893 0.94751 0.91850 1.20471 0.96430 0.99644 1.03842 1.45042 1.30987 1.17323 1.36133 1.15951 0.81500 0.82642 0.79405 1.42715 1.32854 1.22852 1.41826 1.90967 1.62134 1.24502 1.72873 1.22602 0.99428 0.79653 1.01265 1.21174 0.94373 0.96619 0.98927 0.92653 0.97827 0.97483 0.93510 0.92053 0.84132 0.82905 0.74181 0.85716 0.82319 0.86042 0.75057 0.74036 0.87078 0.87537 0.87079 0.86583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.11 13.29 21.45 0.28 -54.83 16 2 C 0.01 0.35 5.46 84.66 0.46 0.81 16 3 Si 0.96 44.65 29.54 68.60 2.03 46.68 16 4 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 5 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 6 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 7 C -0.55 -30.93 9.11 25.60 0.23 -30.69 16 8 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 9 C 0.03 1.55 4.74 29.85 0.14 1.69 16 10 C -0.12 -5.06 4.78 30.59 0.15 -4.92 16 11 C 0.09 2.98 3.21 44.17 0.14 3.12 16 12 H 0.11 3.68 8.14 -2.39 -0.02 3.66 16 13 N -0.83 -28.66 8.94 -171.80 -1.54 -30.19 16 14 C 0.53 18.45 6.81 87.66 0.60 19.05 16 15 O -0.54 -21.24 13.93 -3.05 -0.04 -21.28 16 16 N -0.67 -20.47 5.34 -303.76 -1.62 -22.09 16 17 C 0.16 4.94 6.26 38.07 0.24 5.18 16 18 C -0.16 -4.41 8.66 22.40 0.19 -4.21 16 19 C -0.05 -1.11 10.03 22.24 0.22 -0.89 16 20 C -0.15 -2.78 6.23 -19.60 -0.12 -2.90 16 21 C 0.16 3.95 6.62 38.26 0.25 4.20 16 22 C -0.18 -5.46 9.36 22.63 0.21 -5.24 16 23 N -0.57 -10.33 3.13 -646.36 -2.02 -12.35 16 24 C 0.70 15.06 8.70 179.05 1.56 16.61 16 25 N -0.83 -7.90 8.83 -184.74 -1.63 -9.53 16 26 O -0.62 -20.38 15.34 -4.00 -0.06 -20.44 16 27 C 0.09 0.56 6.32 86.62 0.55 1.10 16 28 C -0.07 -0.53 6.93 30.26 0.21 -0.32 16 29 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 30 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 31 H 0.01 0.36 6.87 -2.38 -0.02 0.34 16 32 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.35 12.15 8.58 -89.70 -0.77 11.38 16 35 H 0.36 12.43 7.55 -89.69 -0.68 11.76 16 36 H 0.42 11.30 8.82 -92.71 -0.82 10.48 16 37 H 0.12 3.86 6.42 -2.91 -0.02 3.84 16 38 H 0.16 2.18 8.06 -2.91 -0.02 2.16 16 39 H 0.12 4.19 6.27 -2.91 -0.02 4.17 16 40 H 0.42 0.59 7.77 -92.71 -0.72 -0.13 16 41 H 0.43 3.32 8.93 -92.71 -0.83 2.50 16 42 H 0.11 0.06 8.14 -2.39 -0.02 0.04 16 43 H 0.11 0.14 8.14 -2.38 -0.02 0.12 16 44 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 45 H 0.12 0.32 8.14 -2.38 -0.02 0.30 16 Total: -1.00 -81.80 373.31 -2.28 -84.08 By element: Atomic # 1 Polarization: 40.08 SS G_CDS: -2.72 Total: 37.36 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: 5.04 Total: 2.59 kcal Atomic # 7 Polarization: -122.47 SS G_CDS: -6.52 Total: -129.00 kcal Atomic # 8 Polarization: -41.62 SS G_CDS: -0.10 Total: -41.72 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -81.80 -2.28 -84.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329039026.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.775 kcal (2) G-P(sol) polarization free energy of solvation -81.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds