Wall clock time and date at job start Sat Apr 11 2020 03:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99905 * 2 1 4 4 H 1.48495 * 109.47346 * 270.00203 * 3 2 1 5 5 H 1.48507 * 109.47138 * 30.00302 * 3 2 1 6 6 H 1.48503 * 109.47135 * 149.99804 * 3 2 1 7 7 C 1.37878 * 120.00036 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99649 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99817 * 0.02562 * 7 2 1 10 10 H 1.08995 * 109.52608 * 299.92138 * 9 7 2 11 11 C 1.53046 * 109.49623 * 59.99951 * 9 7 2 12 12 C 1.53046 * 109.53579 * 181.31259 * 11 9 7 13 13 C 1.53187 * 109.31363 * 298.63645 * 12 11 9 14 14 N 1.46928 * 108.77625 * 54.63376 * 13 12 11 15 15 C 1.34775 * 120.62932 * 126.41524 * 14 13 12 16 16 O 1.21288 * 120.00275 * 179.97438 * 15 14 13 17 17 C 1.50700 * 120.00217 * 359.97291 * 15 14 13 18 18 C 1.53001 * 109.47497 * 180.02562 * 17 15 14 19 19 C 1.53002 * 109.47351 * 180.02562 * 18 17 15 20 20 C 1.53001 * 109.46821 * 179.97438 * 19 18 17 21 21 C 1.53002 * 109.46821 * 180.02562 * 20 19 18 22 22 S 1.81398 * 109.47053 * 180.02562 * 21 20 19 23 23 N 1.65602 * 104.44866 * 179.97438 * 22 21 20 24 24 O 1.42102 * 110.54104 * 291.62129 * 22 21 20 25 25 O 1.42095 * 110.54479 * 68.37640 * 22 21 20 26 26 C 1.46921 * 118.73936 * 306.39044 * 14 13 12 27 27 H 0.97001 * 119.99878 * 359.97438 * 1 2 3 28 28 H 1.08993 * 109.45866 * 301.33434 * 11 9 7 29 29 H 1.09000 * 109.45949 * 61.29770 * 11 9 7 30 30 H 1.09001 * 109.49519 * 58.58791 * 12 11 9 31 31 H 1.08996 * 109.49601 * 178.68448 * 12 11 9 32 32 H 1.09000 * 109.59097 * 294.84726 * 13 12 11 33 33 H 1.09002 * 109.70548 * 174.49212 * 13 12 11 34 34 H 1.09001 * 109.47154 * 300.00670 * 17 15 14 35 35 H 1.09003 * 109.46788 * 60.00417 * 17 15 14 36 36 H 1.09003 * 109.46707 * 300.00593 * 18 17 15 37 37 H 1.08995 * 109.47297 * 59.99926 * 18 17 15 38 38 H 1.08996 * 109.46786 * 299.99582 * 19 18 17 39 39 H 1.08997 * 109.47032 * 60.00288 * 19 18 17 40 40 H 1.08996 * 109.47107 * 299.99395 * 20 19 18 41 41 H 1.09003 * 109.47353 * 59.99997 * 20 19 18 42 42 H 1.09001 * 109.46930 * 300.00042 * 21 20 19 43 43 H 1.09003 * 109.47159 * 59.99879 * 21 20 19 44 44 H 0.97004 * 120.00103 * 359.97438 * 23 22 21 45 45 H 0.97002 * 119.99933 * 179.97438 * 23 22 21 46 46 H 1.08996 * 109.58905 * 293.82203 * 26 14 13 47 47 H 1.09008 * 109.58585 * 173.39403 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 1 0.6247 -2.5590 0.8884 11 6 0.3714 -2.5799 -1.2515 12 6 -0.4190 -3.8904 -1.2372 13 6 0.5570 -5.0710 -1.2557 14 7 1.4998 -4.9227 -0.1386 15 6 1.6772 -5.9225 0.7476 16 8 2.4588 -5.7880 1.6653 17 6 0.9043 -7.2076 0.5984 18 6 1.2886 -8.1678 1.7259 19 6 0.5044 -9.4728 1.5740 20 6 0.8892 -10.4331 2.7012 21 6 0.1055 -11.7383 2.5490 22 16 0.5611 -12.8766 3.8858 23 7 -0.3492 -14.2308 3.6036 24 8 1.9031 -13.3171 3.7299 25 8 0.0896 -12.3922 5.1357 26 6 2.2459 -3.6640 -0.0063 27 1 -0.4850 0.8401 0.0004 28 1 -0.3211 -1.7383 -1.2632 29 1 1.0003 -2.5449 -2.1411 30 1 -1.0295 -3.9372 -0.3354 31 1 -1.0626 -3.9367 -2.1156 32 1 1.1050 -5.0774 -2.1979 33 1 0.0060 -6.0052 -1.1472 34 1 -0.1640 -6.9971 0.6490 35 1 1.1396 -7.6634 -0.3634 36 1 2.3569 -8.3782 1.6756 37 1 1.0531 -7.7118 2.6875 38 1 -0.5639 -9.2625 1.6242 39 1 0.7404 -9.9286 0.6125 40 1 1.9575 -10.6432 2.6506 41 1 0.6536 -9.9774 3.6630 42 1 -0.9629 -11.5285 2.5992 43 1 0.3415 -12.1937 1.5872 44 1 -0.9530 -14.2600 2.8450 45 1 -0.2787 -14.9950 4.1970 46 1 2.9316 -3.5555 -0.8466 47 1 2.8075 -3.6685 0.9280 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329367096.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:06:47 Heat of formation + Delta-G solvation = -141.051829 kcal Electronic energy + Delta-G solvation = -26094.053404 eV Core-core repulsion = 22209.664544 eV Total energy + Delta-G solvation = -3884.388860 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.68861 -37.38265 -37.06163 -36.34246 -36.19618 -33.66220 -33.55681 -32.67526 -31.33788 -30.27083 -27.94320 -25.13141 -24.68673 -22.96336 -21.72986 -21.40283 -19.87933 -19.68395 -18.23280 -18.03638 -17.69668 -16.82345 -16.75780 -16.16678 -15.93704 -15.72912 -15.25540 -15.07013 -14.59104 -13.89587 -13.80376 -13.59132 -13.40821 -12.99497 -12.81852 -12.56848 -12.54762 -12.47337 -12.40725 -12.33020 -12.08286 -11.98109 -11.85856 -11.37598 -11.34236 -10.99547 -10.91689 -10.87527 -10.85682 -10.74620 -10.70953 -10.31008 -9.97697 -9.82862 -9.48969 -9.26541 -8.84261 -8.40344 -7.90556 -6.03703 -4.10717 -0.21055 2.41828 3.05881 3.19840 3.28479 3.35448 3.39146 3.53627 3.81958 3.99574 4.41219 4.41922 4.53515 4.75334 4.79779 4.90995 5.15262 5.19019 5.25139 5.29647 5.33681 5.47382 5.52922 5.54778 5.61034 5.63596 5.70849 5.76074 6.08556 6.09979 6.25310 6.30517 6.38432 6.46128 6.52412 6.64487 6.79081 6.96091 7.14470 7.31173 7.67227 7.89928 8.01445 8.05703 8.35879 8.65654 8.93021 9.54252 11.01801 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.030773 B = 0.001730 C = 0.001698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.679029 B =16180.040026 C =16489.978547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.514 4.514 8 H 0.057 0.943 9 C 0.040 3.960 10 H 0.029 0.971 11 C -0.113 4.113 12 C -0.135 4.135 13 C 0.110 3.890 14 N -0.605 5.605 15 C 0.506 3.494 16 O -0.553 6.553 17 C -0.139 4.139 18 C -0.109 4.109 19 C -0.110 4.110 20 C -0.115 4.115 21 C -0.617 4.617 22 S 2.610 3.390 23 N -1.254 6.254 24 O -0.963 6.963 25 O -0.963 6.963 26 C 0.116 3.884 27 H 0.260 0.740 28 H 0.095 0.905 29 H 0.035 0.965 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.136 0.864 43 H 0.136 0.864 44 H 0.412 0.588 45 H 0.419 0.581 46 H 0.054 0.946 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.598 -26.752 -0.982 27.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.139 4.139 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.553 4.553 8 H 0.075 0.925 9 C 0.021 3.979 10 H 0.047 0.953 11 C -0.151 4.151 12 C -0.173 4.173 13 C -0.014 4.014 14 N -0.337 5.337 15 C 0.294 3.706 16 O -0.431 6.431 17 C -0.179 4.179 18 C -0.147 4.147 19 C -0.149 4.149 20 C -0.154 4.154 21 C -0.748 4.748 22 S 2.703 3.297 23 N -0.927 5.927 24 O -0.953 6.953 25 O -0.952 6.952 26 C -0.005 4.005 27 H 0.070 0.930 28 H 0.114 0.886 29 H 0.054 0.946 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.109 0.891 35 H 0.106 0.894 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.101 0.899 41 H 0.102 0.898 42 H 0.154 0.846 43 H 0.154 0.846 44 H 0.237 0.763 45 H 0.249 0.751 46 H 0.072 0.928 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.582 -26.272 0.285 26.670 hybrid contribution -0.405 0.737 -0.914 1.242 sum -4.987 -25.535 -0.629 26.025 Atomic orbital electron populations 1.69870 1.05901 1.26479 1.50555 1.24942 0.94872 0.99113 0.94937 0.86570 0.79938 0.83301 0.78058 1.20698 1.21237 1.19848 1.21081 0.93005 0.90292 1.50872 0.92479 1.18971 0.92961 0.91226 0.94762 0.95317 1.21633 0.99468 0.95381 0.98579 1.22003 0.97654 0.96753 1.00925 1.21736 0.91375 0.98999 0.89261 1.48337 1.42081 1.16103 1.27204 1.20570 0.83027 0.85157 0.81889 1.90665 1.38009 1.81819 1.32648 1.21678 1.01202 0.94181 1.00828 1.21382 1.00854 0.93515 0.98916 1.21561 1.00730 0.94917 0.97704 1.21369 1.00007 0.92103 1.01894 1.30399 1.11603 1.13185 1.19575 1.04846 0.74222 0.74692 0.75950 1.53176 1.62169 1.34989 1.42335 1.93624 1.35658 1.79429 1.86541 1.93627 1.81104 1.80680 1.39759 1.21987 0.95088 0.81991 1.01419 0.92981 0.88627 0.94611 0.92400 0.92496 0.92023 0.91129 0.89149 0.89369 0.90924 0.90790 0.91315 0.91411 0.89852 0.89781 0.84570 0.84608 0.76253 0.75127 0.92805 0.90325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.83 11.31 55.43 0.63 -24.20 16 2 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 3 Si 0.89 21.08 29.54 -169.99 -5.02 16.05 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 7 C -0.51 -13.89 8.56 -34.44 -0.29 -14.19 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.04 0.98 2.25 -91.65 -0.21 0.77 16 10 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 11 C -0.11 -2.48 4.96 -26.68 -0.13 -2.62 16 12 C -0.14 -2.31 6.08 -26.61 -0.16 -2.48 16 13 C 0.11 1.61 6.34 -3.71 -0.02 1.59 16 14 N -0.61 -10.93 2.97 -172.77 -0.51 -11.44 16 15 C 0.51 8.76 7.70 -10.99 -0.08 8.68 16 16 O -0.55 -11.69 15.40 5.55 0.09 -11.61 16 17 C -0.14 -1.60 4.05 -27.88 -0.11 -1.72 16 18 C -0.11 -1.16 4.50 -26.73 -0.12 -1.28 16 19 C -0.11 -0.78 5.21 -26.73 -0.14 -0.92 16 20 C -0.11 -0.77 5.22 -26.73 -0.14 -0.91 16 21 C -0.62 -2.36 6.09 37.16 0.23 -2.14 16 22 S 2.61 16.68 5.97 -107.50 -0.64 16.03 16 23 N -1.25 -3.70 9.43 60.35 0.57 -3.13 16 24 O -0.96 -10.18 18.10 -57.54 -1.04 -11.22 16 25 O -0.96 -10.32 18.10 -57.54 -1.04 -11.36 16 26 C 0.12 2.51 5.66 -3.71 -0.02 2.49 16 27 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 28 H 0.10 2.40 6.04 -51.93 -0.31 2.09 16 29 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.79 5.93 -51.93 -0.31 0.48 16 34 H 0.09 0.92 7.70 -51.93 -0.40 0.52 16 35 H 0.09 0.82 7.94 -51.93 -0.41 0.41 16 36 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 37 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 38 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.14 0.24 8.14 -51.92 -0.42 -0.18 16 43 H 0.14 0.22 8.14 -51.92 -0.42 -0.21 16 44 H 0.41 -0.08 8.83 -34.48 -0.30 -0.38 16 45 H 0.42 1.04 8.96 -34.47 -0.31 0.73 16 46 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 47 H 0.08 1.84 7.01 -51.92 -0.36 1.48 16 LS Contribution 386.44 15.07 5.82 5.82 Total: -1.00 -37.61 386.44 -10.33 -47.94 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -7.87 Total: -1.78 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: -1.30 Total: -11.11 kcal Atomic # 7 Polarization: -39.46 SS G_CDS: 0.68 Total: -38.78 kcal Atomic # 8 Polarization: -32.18 SS G_CDS: -2.00 Total: -34.18 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: 16.68 SS G_CDS: -0.64 Total: 16.03 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -37.61 -10.33 -47.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329367096.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.111 kcal (2) G-P(sol) polarization free energy of solvation -37.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds