Wall clock time and date at job start Sat Apr 11 2020 03:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99905 * 2 1 4 4 H 1.48495 * 109.47346 * 270.00203 * 3 2 1 5 5 H 1.48507 * 109.47138 * 30.00302 * 3 2 1 6 6 H 1.48503 * 109.47135 * 149.99804 * 3 2 1 7 7 C 1.37878 * 120.00036 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99649 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99817 * 0.02562 * 7 2 1 10 10 H 1.08995 * 109.52608 * 299.92138 * 9 7 2 11 11 C 1.53046 * 109.49623 * 59.99951 * 9 7 2 12 12 C 1.53046 * 109.53579 * 181.31259 * 11 9 7 13 13 C 1.53187 * 109.31363 * 298.63645 * 12 11 9 14 14 N 1.46928 * 108.77625 * 54.63376 * 13 12 11 15 15 C 1.34775 * 120.62932 * 126.41524 * 14 13 12 16 16 O 1.21288 * 120.00275 * 179.97438 * 15 14 13 17 17 C 1.50700 * 120.00217 * 359.97291 * 15 14 13 18 18 C 1.53001 * 109.47497 * 180.02562 * 17 15 14 19 19 C 1.53002 * 109.47351 * 180.02562 * 18 17 15 20 20 C 1.53001 * 109.46821 * 179.97438 * 19 18 17 21 21 C 1.53002 * 109.46821 * 180.02562 * 20 19 18 22 22 S 1.81398 * 109.47053 * 180.02562 * 21 20 19 23 23 N 1.65602 * 104.44866 * 179.97438 * 22 21 20 24 24 O 1.42102 * 110.54104 * 291.62129 * 22 21 20 25 25 O 1.42095 * 110.54479 * 68.37640 * 22 21 20 26 26 C 1.46921 * 118.73936 * 306.39044 * 14 13 12 27 27 H 0.97001 * 119.99878 * 359.97438 * 1 2 3 28 28 H 1.08993 * 109.45866 * 301.33434 * 11 9 7 29 29 H 1.09000 * 109.45949 * 61.29770 * 11 9 7 30 30 H 1.09001 * 109.49519 * 58.58791 * 12 11 9 31 31 H 1.08996 * 109.49601 * 178.68448 * 12 11 9 32 32 H 1.09000 * 109.59097 * 294.84726 * 13 12 11 33 33 H 1.09002 * 109.70548 * 174.49212 * 13 12 11 34 34 H 1.09001 * 109.47154 * 300.00670 * 17 15 14 35 35 H 1.09003 * 109.46788 * 60.00417 * 17 15 14 36 36 H 1.09003 * 109.46707 * 300.00593 * 18 17 15 37 37 H 1.08995 * 109.47297 * 59.99926 * 18 17 15 38 38 H 1.08996 * 109.46786 * 299.99582 * 19 18 17 39 39 H 1.08997 * 109.47032 * 60.00288 * 19 18 17 40 40 H 1.08996 * 109.47107 * 299.99395 * 20 19 18 41 41 H 1.09003 * 109.47353 * 59.99997 * 20 19 18 42 42 H 1.09001 * 109.46930 * 300.00042 * 21 20 19 43 43 H 1.09003 * 109.47159 * 59.99879 * 21 20 19 44 44 H 0.97004 * 120.00103 * 359.97438 * 23 22 21 45 45 H 0.97002 * 119.99933 * 179.97438 * 23 22 21 46 46 H 1.08996 * 109.58905 * 293.82203 * 26 14 13 47 47 H 1.09008 * 109.58585 * 173.39403 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 1 0.6247 -2.5590 0.8884 11 6 0.3714 -2.5799 -1.2515 12 6 -0.4190 -3.8904 -1.2372 13 6 0.5570 -5.0710 -1.2557 14 7 1.4998 -4.9227 -0.1386 15 6 1.6772 -5.9225 0.7476 16 8 2.4588 -5.7880 1.6653 17 6 0.9043 -7.2076 0.5984 18 6 1.2886 -8.1678 1.7259 19 6 0.5044 -9.4728 1.5740 20 6 0.8892 -10.4331 2.7012 21 6 0.1055 -11.7383 2.5490 22 16 0.5611 -12.8766 3.8858 23 7 -0.3492 -14.2308 3.6036 24 8 1.9031 -13.3171 3.7299 25 8 0.0896 -12.3922 5.1357 26 6 2.2459 -3.6640 -0.0063 27 1 -0.4850 0.8401 0.0004 28 1 -0.3211 -1.7383 -1.2632 29 1 1.0003 -2.5449 -2.1411 30 1 -1.0295 -3.9372 -0.3354 31 1 -1.0626 -3.9367 -2.1156 32 1 1.1050 -5.0774 -2.1979 33 1 0.0060 -6.0052 -1.1472 34 1 -0.1640 -6.9971 0.6490 35 1 1.1396 -7.6634 -0.3634 36 1 2.3569 -8.3782 1.6756 37 1 1.0531 -7.7118 2.6875 38 1 -0.5639 -9.2625 1.6242 39 1 0.7404 -9.9286 0.6125 40 1 1.9575 -10.6432 2.6506 41 1 0.6536 -9.9774 3.6630 42 1 -0.9629 -11.5285 2.5992 43 1 0.3415 -12.1937 1.5872 44 1 -0.9530 -14.2600 2.8450 45 1 -0.2787 -14.9950 4.1970 46 1 2.9316 -3.5555 -0.8466 47 1 2.8075 -3.6685 0.9280 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329367096.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:06:46 Heat of formation + Delta-G solvation = -170.716348 kcal Electronic energy + Delta-G solvation = -26095.339754 eV Core-core repulsion = 22209.664544 eV Total energy + Delta-G solvation = -3885.675210 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.08598 -38.49152 -38.02457 -37.04310 -36.89651 -35.37193 -33.97454 -33.58343 -32.92363 -31.90468 -28.79919 -26.98083 -26.01370 -23.90889 -23.25998 -22.09881 -21.29012 -20.31270 -19.65634 -18.58733 -18.40348 -18.13394 -17.76773 -17.30041 -16.83481 -16.68962 -16.49054 -16.19941 -15.93529 -15.10608 -14.93479 -14.86241 -14.52820 -14.40192 -14.14080 -13.73591 -13.57926 -13.37855 -13.18534 -13.11384 -13.02864 -12.96005 -12.88002 -12.75832 -12.67248 -12.48874 -12.04612 -12.01568 -11.88203 -11.84265 -11.59658 -11.40753 -11.37764 -11.25171 -11.22030 -10.86244 -10.62819 -10.42361 -9.45433 -8.12130 -6.27314 -0.67150 1.39174 1.40593 1.50606 1.73388 2.03067 2.18800 2.43092 2.76055 3.14045 3.47725 3.50127 3.72996 3.90760 3.94255 4.13539 4.20043 4.29026 4.36936 4.39885 4.53205 4.56475 4.57460 4.66654 4.72998 4.80499 4.88898 4.90185 4.91975 4.98029 5.02298 5.13782 5.15454 5.30950 5.33156 5.38873 5.48306 5.51697 5.59815 5.61099 5.92881 6.13972 6.34118 6.42316 6.63916 6.82313 7.29973 7.40769 8.91296 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.030773 B = 0.001730 C = 0.001698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.679029 B =16180.040026 C =16489.978547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.016 3.984 3 Si 0.955 3.045 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.540 4.540 8 H 0.050 0.950 9 C 0.041 3.959 10 H -0.016 1.016 11 C -0.107 4.107 12 C -0.128 4.128 13 C 0.110 3.890 14 N -0.611 5.611 15 C 0.494 3.506 16 O -0.603 6.603 17 C -0.127 4.127 18 C -0.111 4.111 19 C -0.101 4.101 20 C -0.131 4.131 21 C -0.591 4.591 22 S 2.614 3.386 23 N -1.239 6.239 24 O -1.014 7.014 25 O -1.015 7.015 26 C 0.128 3.872 27 H 0.262 0.738 28 H 0.061 0.939 29 H 0.036 0.964 30 H 0.044 0.956 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.122 0.878 34 H 0.116 0.884 35 H 0.127 0.873 36 H 0.055 0.945 37 H 0.047 0.953 38 H 0.088 0.912 39 H 0.093 0.907 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.168 0.832 43 H 0.171 0.829 44 H 0.429 0.571 45 H 0.423 0.577 46 H 0.058 0.942 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.347 -28.862 -3.779 30.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.183 4.183 3 Si 0.781 3.219 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.578 4.578 8 H 0.068 0.932 9 C 0.022 3.978 10 H 0.002 0.998 11 C -0.145 4.145 12 C -0.166 4.166 13 C -0.012 4.012 14 N -0.343 5.343 15 C 0.285 3.715 16 O -0.485 6.485 17 C -0.166 4.166 18 C -0.149 4.149 19 C -0.139 4.139 20 C -0.170 4.170 21 C -0.724 4.724 22 S 2.711 3.289 23 N -0.917 5.917 24 O -1.003 7.003 25 O -1.005 7.005 26 C 0.005 3.995 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.109 0.891 32 H 0.098 0.902 33 H 0.140 0.860 34 H 0.134 0.866 35 H 0.145 0.855 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.106 0.894 39 H 0.112 0.888 40 H 0.094 0.906 41 H 0.090 0.910 42 H 0.186 0.814 43 H 0.189 0.811 44 H 0.258 0.742 45 H 0.253 0.747 46 H 0.077 0.923 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.353 -28.433 -2.519 29.243 hybrid contribution 0.126 1.435 -0.043 1.442 sum -6.227 -26.998 -2.562 27.825 Atomic orbital electron populations 1.70004 1.07023 1.27205 1.50878 1.25690 0.95738 1.02260 0.94582 0.85605 0.78546 0.79331 0.78457 1.19541 1.20850 1.19869 1.21451 0.93014 0.92067 1.51273 0.93177 1.18874 0.93171 0.91615 0.94165 0.99761 1.21427 0.98750 0.97381 0.96926 1.21917 0.97875 0.94913 1.01914 1.22016 0.90569 0.99917 0.88674 1.48451 1.42426 1.14797 1.28615 1.21779 0.82606 0.86625 0.80496 1.90643 1.40344 1.82930 1.34620 1.21767 1.01352 0.90665 1.02865 1.21390 1.00626 0.95353 0.97550 1.21517 1.01094 0.92607 0.98727 1.21468 1.00292 0.93623 1.01658 1.30164 1.13004 1.10332 1.18923 1.04333 0.73364 0.75257 0.75991 1.52766 1.61909 1.33932 1.43057 1.93567 1.38771 1.80622 1.87322 1.93568 1.81560 1.81734 1.43588 1.21498 0.94564 0.83378 1.00017 0.92914 0.92037 0.94534 0.93669 0.89081 0.90163 0.86030 0.86587 0.85537 0.92655 0.93405 0.89352 0.88798 0.90625 0.91005 0.81374 0.81107 0.74160 0.74703 0.92328 0.93406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.30 11.31 21.45 0.24 -52.06 16 2 C 0.02 0.92 5.30 84.65 0.45 1.37 16 3 Si 0.96 43.97 29.54 68.60 2.03 46.00 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 6 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 7 C -0.54 -30.29 8.56 25.60 0.22 -30.08 16 8 H 0.05 2.79 7.74 -2.91 -0.02 2.77 16 9 C 0.04 2.08 2.25 -11.46 -0.03 2.06 16 10 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 11 C -0.11 -4.73 4.96 30.63 0.15 -4.58 16 12 C -0.13 -4.09 6.08 30.67 0.19 -3.90 16 13 C 0.11 2.79 6.34 86.36 0.55 3.34 16 14 N -0.61 -21.37 2.97 -818.91 -2.43 -23.81 16 15 C 0.49 16.64 7.70 87.66 0.67 17.32 16 16 O -0.60 -26.40 15.40 -3.06 -0.05 -26.44 16 17 C -0.13 -2.45 4.05 29.85 0.12 -2.33 16 18 C -0.11 -2.15 4.50 30.60 0.14 -2.02 16 19 C -0.10 -1.01 5.21 30.60 0.16 -0.85 16 20 C -0.13 -1.48 5.22 30.60 0.16 -1.32 16 21 C -0.59 -2.33 6.09 71.98 0.44 -1.89 16 22 S 2.61 31.22 5.97 -56.49 -0.34 30.89 16 23 N -1.24 -5.01 9.43 37.02 0.35 -4.66 16 24 O -1.01 -21.63 18.10 -127.65 -2.31 -23.94 16 25 O -1.02 -22.20 18.10 -127.65 -2.31 -24.51 16 26 C 0.13 5.71 5.66 86.36 0.49 6.20 16 27 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 28 H 0.06 3.15 6.04 -2.39 -0.01 3.14 16 29 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.12 1.93 5.93 -2.39 -0.01 1.91 16 34 H 0.12 1.73 7.70 -2.39 -0.02 1.71 16 35 H 0.13 1.56 7.94 -2.39 -0.02 1.54 16 36 H 0.05 1.25 8.10 -2.39 -0.02 1.23 16 37 H 0.05 1.16 8.10 -2.39 -0.02 1.14 16 38 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 40 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.07 0.97 8.14 -2.39 -0.02 0.96 16 42 H 0.17 -0.29 8.14 -2.39 -0.02 -0.31 16 43 H 0.17 -0.41 8.14 -2.39 -0.02 -0.43 16 44 H 0.43 -1.50 8.83 -96.74 -0.85 -2.35 16 45 H 0.42 1.58 8.96 -96.74 -0.87 0.71 16 46 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 47 H 0.05 2.38 7.01 -2.38 -0.02 2.36 16 Total: -1.00 -89.85 386.44 -1.86 -91.72 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -0.75 Total: 3.51 kcal Atomic # 6 Polarization: -20.39 SS G_CDS: 3.71 Total: -16.68 kcal Atomic # 7 Polarization: -78.69 SS G_CDS: -1.84 Total: -80.53 kcal Atomic # 8 Polarization: -70.22 SS G_CDS: -4.67 Total: -74.89 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Atomic # 16 Polarization: 31.22 SS G_CDS: -0.34 Total: 30.89 kcal Total: -89.85 -1.86 -91.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329367096.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.000 kcal (2) G-P(sol) polarization free energy of solvation -89.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds