Wall clock time and date at job start Sat Apr 11 2020 03:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99929 * 2 1 4 4 H 1.48503 * 109.46710 * 269.99983 * 3 2 1 5 5 H 1.48499 * 109.47384 * 29.99420 * 3 2 1 6 6 H 1.48496 * 109.47345 * 150.00200 * 3 2 1 7 7 C 1.37878 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00246 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99843 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.50015 * 59.92798 * 9 7 2 11 11 C 1.53042 * 109.52420 * 299.84741 * 9 7 2 12 12 C 1.53034 * 109.54186 * 178.66962 * 11 9 7 13 13 C 1.52760 * 109.38519 * 61.24042 * 12 11 9 14 14 N 1.46926 * 109.00553 * 305.59013 * 13 12 11 15 15 C 1.34778 * 120.63059 * 233.57932 * 14 13 12 16 16 O 1.21284 * 120.00136 * 179.72107 * 15 14 13 17 17 C 1.50697 * 120.00136 * 359.72384 * 15 14 13 18 18 C 1.52995 * 109.47233 * 179.97438 * 17 15 14 19 19 C 1.53005 * 109.46987 * 179.97438 * 18 17 15 20 20 C 1.53000 * 109.46935 * 180.02562 * 19 18 17 21 21 C 1.53005 * 109.47256 * 180.02562 * 20 19 18 22 22 S 1.81395 * 109.47148 * 180.02562 * 21 20 19 23 23 N 1.65608 * 104.44636 * 179.97438 * 22 21 20 24 24 O 1.42097 * 110.54421 * 68.37368 * 22 21 20 25 25 O 1.42099 * 110.54113 * 291.62151 * 22 21 20 26 26 C 1.46928 * 118.74129 * 53.30717 * 14 13 12 27 27 H 0.96994 * 120.00253 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.45931 * 298.69376 * 11 9 7 29 29 H 1.09008 * 109.45861 * 58.64987 * 11 9 7 30 30 H 1.09002 * 109.49963 * 181.31984 * 12 11 9 31 31 H 1.09009 * 109.49652 * 301.41273 * 12 11 9 32 32 H 1.09000 * 109.51453 * 185.71162 * 13 12 11 33 33 H 1.08993 * 109.43256 * 65.42234 * 13 12 11 34 34 H 1.09004 * 109.47222 * 59.99909 * 17 15 14 35 35 H 1.09001 * 109.46886 * 299.99953 * 17 15 14 36 36 H 1.09001 * 109.46929 * 60.00526 * 18 17 15 37 37 H 1.09001 * 109.47515 * 300.00019 * 18 17 15 38 38 H 1.08991 * 109.46979 * 60.00528 * 19 18 17 39 39 H 1.08993 * 109.47269 * 300.00098 * 19 18 17 40 40 H 1.09004 * 109.47500 * 59.99740 * 20 19 18 41 41 H 1.09001 * 109.47262 * 299.99915 * 20 19 18 42 42 H 1.09000 * 109.46755 * 59.99426 * 21 20 19 43 43 H 1.09001 * 109.46751 * 300.00026 * 21 20 19 44 44 H 0.97000 * 119.99287 * 239.99854 * 23 22 21 45 45 H 0.96995 * 120.00068 * 59.72375 * 23 22 21 46 46 H 1.09003 * 109.58542 * 66.42905 * 26 14 13 47 47 H 1.08996 * 109.59365 * 186.85146 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 1 0.6236 -2.5570 -0.8889 11 6 0.3732 -2.5829 1.2513 12 6 -0.4172 -3.8932 1.2352 13 6 0.5546 -5.0718 1.2465 14 7 1.5000 -4.9231 0.1316 15 6 1.6755 -5.9206 -0.7576 16 8 2.4552 -5.7836 -1.6765 17 6 0.9030 -7.2060 -0.6102 18 6 1.2849 -8.1631 -1.7410 19 6 0.5010 -9.4685 -1.5909 20 6 0.8834 -10.4258 -2.7215 21 6 0.0990 -11.7310 -2.5718 22 16 0.5530 -12.8663 -3.9117 23 7 -0.3570 -14.2213 -3.6313 24 8 1.8948 -13.3079 -3.7580 25 8 0.0807 -12.3785 -5.1600 26 6 2.2460 -3.6640 0.0010 27 1 -0.4850 0.8400 0.0004 28 1 1.0033 -2.5498 2.1401 29 1 -0.3194 -1.7412 1.2659 30 1 -1.0597 -3.9415 2.1144 31 1 -1.0290 -3.9380 0.3340 32 1 -0.0007 -6.0028 1.1328 33 1 1.1007 -5.0824 2.1897 34 1 -0.1654 -6.9954 -0.6582 35 1 1.1402 -7.6644 0.3499 36 1 2.3533 -8.3739 -1.6934 37 1 1.0474 -7.7046 -2.7010 38 1 -0.5674 -9.2581 -1.6383 39 1 0.7388 -9.9268 -0.6311 40 1 1.9519 -10.6361 -2.6738 41 1 0.6458 -9.9677 -3.6816 42 1 -0.9694 -11.5203 -2.6198 43 1 0.3362 -12.1893 -1.6117 44 1 0.0783 -15.0740 -3.4758 45 1 -1.3250 -14.1613 -3.6187 46 1 2.9329 -3.5575 0.8407 47 1 2.8063 -3.6664 -0.9339 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329367097.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:06:50 Heat of formation + Delta-G solvation = -142.971551 kcal Electronic energy + Delta-G solvation = -26094.160238 eV Core-core repulsion = 22209.688133 eV Total energy + Delta-G solvation = -3884.472105 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.68812 -37.47206 -37.05918 -36.38032 -36.18183 -33.68346 -33.55178 -32.63833 -31.34711 -30.27508 -27.89872 -25.12509 -24.66825 -22.91959 -21.72125 -21.38562 -19.88982 -19.67741 -18.22486 -18.00378 -17.77097 -16.88975 -16.60729 -16.35319 -16.08833 -15.56842 -15.24328 -14.96711 -14.57940 -13.87341 -13.75974 -13.59575 -13.40525 -12.98423 -12.81449 -12.63978 -12.55025 -12.50583 -12.41263 -12.38600 -12.07904 -11.97053 -11.84562 -11.35300 -11.34137 -11.24479 -10.99439 -10.84360 -10.74519 -10.73251 -10.57022 -10.31197 -9.97688 -9.81822 -9.49061 -9.26027 -8.83839 -8.40247 -7.90337 -6.03590 -4.10561 -0.18099 2.43539 3.06323 3.29104 3.32462 3.35687 3.38651 3.54451 3.76892 4.06110 4.33644 4.41344 4.56706 4.77178 4.80450 4.96294 5.16628 5.20640 5.25849 5.31224 5.35691 5.45207 5.54719 5.56361 5.61587 5.64699 5.73145 5.77667 6.09380 6.10827 6.26423 6.30713 6.38749 6.46291 6.55550 6.64755 6.79324 6.96460 7.14595 7.31295 7.67340 7.90093 8.01764 8.05677 8.36002 8.66078 8.93202 9.54391 11.02003 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.030715 B = 0.001730 C = 0.001698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.394426 B =16177.595126 C =16485.075425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.514 4.514 8 H 0.057 0.943 9 C 0.040 3.960 10 H 0.029 0.971 11 C -0.112 4.112 12 C -0.136 4.136 13 C 0.110 3.890 14 N -0.605 5.605 15 C 0.506 3.494 16 O -0.552 6.552 17 C -0.139 4.139 18 C -0.109 4.109 19 C -0.110 4.110 20 C -0.115 4.115 21 C -0.626 4.626 22 S 2.615 3.385 23 N -1.251 6.251 24 O -0.960 6.960 25 O -0.958 6.958 26 C 0.116 3.884 27 H 0.260 0.740 28 H 0.035 0.965 29 H 0.095 0.905 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.132 0.868 43 H 0.134 0.866 44 H 0.420 0.580 45 H 0.415 0.585 46 H 0.054 0.946 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.579 -26.953 0.819 27.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.139 4.139 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.552 4.552 8 H 0.075 0.925 9 C 0.021 3.979 10 H 0.047 0.953 11 C -0.150 4.150 12 C -0.174 4.174 13 C -0.013 4.013 14 N -0.337 5.337 15 C 0.294 3.706 16 O -0.431 6.431 17 C -0.179 4.179 18 C -0.147 4.147 19 C -0.149 4.149 20 C -0.154 4.154 21 C -0.756 4.756 22 S 2.706 3.294 23 N -0.922 5.922 24 O -0.950 6.950 25 O -0.947 6.947 26 C -0.005 4.005 27 H 0.070 0.930 28 H 0.054 0.946 29 H 0.113 0.887 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.108 0.892 35 H 0.106 0.894 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.100 0.900 41 H 0.101 0.899 42 H 0.150 0.850 43 H 0.152 0.848 44 H 0.249 0.751 45 H 0.242 0.758 46 H 0.072 0.928 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.581 -26.485 -0.419 26.882 hybrid contribution -0.424 0.777 0.934 1.287 sum -5.005 -25.709 0.515 26.196 Atomic orbital electron populations 1.69870 1.05896 1.26482 1.50562 1.24943 0.94871 0.99109 0.94939 0.86570 0.79832 0.83288 0.78167 1.20656 1.21255 1.19889 1.21080 0.93004 0.90289 1.50870 0.92477 1.18971 0.92972 0.91232 0.94757 0.95325 1.21626 0.99450 0.95365 0.98592 1.21933 0.97714 0.96807 1.00946 1.21644 0.91344 0.99014 0.89326 1.48339 1.41987 1.16213 1.27187 1.20570 0.83014 0.85176 0.81866 1.90662 1.38109 1.81766 1.32595 1.21678 1.01190 0.94189 1.00832 1.21384 1.00860 0.93564 0.98852 1.21559 1.00672 0.94932 0.97743 1.21368 1.00001 0.92347 1.01725 1.30626 1.11277 1.13308 1.20371 1.04798 0.73904 0.74474 0.76250 1.53413 1.20119 1.26210 1.92443 1.93619 1.34596 1.79506 1.87266 1.93640 1.81431 1.80983 1.38655 1.21987 0.95092 0.81984 1.01431 0.92981 0.94595 0.88656 0.92455 0.92429 0.91140 0.92029 0.89166 0.89375 0.90945 0.90813 0.91389 0.91473 0.89965 0.89925 0.84971 0.84769 0.75121 0.75848 0.92795 0.90327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.87 11.32 55.43 0.63 -24.24 16 2 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 3 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.51 -13.91 8.56 -34.44 -0.29 -14.20 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.04 0.97 2.25 -91.65 -0.21 0.77 16 10 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 11 C -0.11 -2.48 4.96 -26.69 -0.13 -2.61 16 12 C -0.14 -2.33 6.06 -26.84 -0.16 -2.50 16 13 C 0.11 1.63 6.31 -3.93 -0.02 1.60 16 14 N -0.61 -10.98 2.98 -173.03 -0.52 -11.49 16 15 C 0.51 8.82 7.70 -10.99 -0.08 8.73 16 16 O -0.55 -11.74 15.40 5.55 0.09 -11.65 16 17 C -0.14 -1.63 4.05 -27.89 -0.11 -1.74 16 18 C -0.11 -1.18 4.50 -26.73 -0.12 -1.30 16 19 C -0.11 -0.81 5.22 -26.73 -0.14 -0.95 16 20 C -0.12 -0.81 5.22 -26.73 -0.14 -0.95 16 21 C -0.63 -2.61 6.18 37.16 0.23 -2.38 16 22 S 2.62 16.45 5.97 -107.50 -0.64 15.81 16 23 N -1.25 -3.45 9.39 60.35 0.57 -2.89 16 24 O -0.96 -9.79 18.08 -57.54 -1.04 -10.83 16 25 O -0.96 -10.11 18.10 -57.54 -1.04 -11.16 16 26 C 0.12 2.51 5.66 -3.71 -0.02 2.49 16 27 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 28 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.10 2.40 6.05 -51.92 -0.31 2.08 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.06 1.04 8.14 -51.92 -0.42 0.62 16 32 H 0.07 0.80 5.93 -51.93 -0.31 0.49 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.09 0.93 7.68 -51.93 -0.40 0.53 16 35 H 0.09 0.84 7.95 -51.93 -0.41 0.42 16 36 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 37 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.13 0.28 8.14 -51.92 -0.42 -0.14 16 43 H 0.13 0.31 8.14 -51.92 -0.42 -0.11 16 44 H 0.42 0.76 8.92 -34.47 -0.31 0.45 16 45 H 0.41 0.21 8.96 -34.48 -0.31 -0.10 16 46 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 47 H 0.08 1.84 7.00 -51.93 -0.36 1.48 16 LS Contribution 386.54 15.07 5.83 5.83 Total: -1.00 -37.15 386.54 -10.33 -47.48 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -7.87 Total: -1.52 kcal Atomic # 6 Polarization: -10.12 SS G_CDS: -1.30 Total: -11.42 kcal Atomic # 7 Polarization: -39.30 SS G_CDS: 0.68 Total: -38.62 kcal Atomic # 8 Polarization: -31.64 SS G_CDS: -2.00 Total: -33.64 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 16.45 SS G_CDS: -0.64 Total: 15.81 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -37.15 -10.33 -47.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329367097.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.490 kcal (2) G-P(sol) polarization free energy of solvation -37.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds