Wall clock time and date at job start Sat Apr 11 2020 03:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99929 * 2 1 4 4 H 1.48503 * 109.46710 * 269.99983 * 3 2 1 5 5 H 1.48499 * 109.47384 * 29.99420 * 3 2 1 6 6 H 1.48496 * 109.47345 * 150.00200 * 3 2 1 7 7 C 1.37878 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00246 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99843 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.50015 * 59.92798 * 9 7 2 11 11 C 1.53042 * 109.52420 * 299.84741 * 9 7 2 12 12 C 1.53034 * 109.54186 * 178.66962 * 11 9 7 13 13 C 1.52760 * 109.38519 * 61.24042 * 12 11 9 14 14 N 1.46926 * 109.00553 * 305.59013 * 13 12 11 15 15 C 1.34778 * 120.63059 * 233.57932 * 14 13 12 16 16 O 1.21284 * 120.00136 * 179.72107 * 15 14 13 17 17 C 1.50697 * 120.00136 * 359.72384 * 15 14 13 18 18 C 1.52995 * 109.47233 * 179.97438 * 17 15 14 19 19 C 1.53005 * 109.46987 * 179.97438 * 18 17 15 20 20 C 1.53000 * 109.46935 * 180.02562 * 19 18 17 21 21 C 1.53005 * 109.47256 * 180.02562 * 20 19 18 22 22 S 1.81395 * 109.47148 * 180.02562 * 21 20 19 23 23 N 1.65608 * 104.44636 * 179.97438 * 22 21 20 24 24 O 1.42097 * 110.54421 * 68.37368 * 22 21 20 25 25 O 1.42099 * 110.54113 * 291.62151 * 22 21 20 26 26 C 1.46928 * 118.74129 * 53.30717 * 14 13 12 27 27 H 0.96994 * 120.00253 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.45931 * 298.69376 * 11 9 7 29 29 H 1.09008 * 109.45861 * 58.64987 * 11 9 7 30 30 H 1.09002 * 109.49963 * 181.31984 * 12 11 9 31 31 H 1.09009 * 109.49652 * 301.41273 * 12 11 9 32 32 H 1.09000 * 109.51453 * 185.71162 * 13 12 11 33 33 H 1.08993 * 109.43256 * 65.42234 * 13 12 11 34 34 H 1.09004 * 109.47222 * 59.99909 * 17 15 14 35 35 H 1.09001 * 109.46886 * 299.99953 * 17 15 14 36 36 H 1.09001 * 109.46929 * 60.00526 * 18 17 15 37 37 H 1.09001 * 109.47515 * 300.00019 * 18 17 15 38 38 H 1.08991 * 109.46979 * 60.00528 * 19 18 17 39 39 H 1.08993 * 109.47269 * 300.00098 * 19 18 17 40 40 H 1.09004 * 109.47500 * 59.99740 * 20 19 18 41 41 H 1.09001 * 109.47262 * 299.99915 * 20 19 18 42 42 H 1.09000 * 109.46755 * 59.99426 * 21 20 19 43 43 H 1.09001 * 109.46751 * 300.00026 * 21 20 19 44 44 H 0.97000 * 119.99287 * 239.99854 * 23 22 21 45 45 H 0.96995 * 120.00068 * 59.72375 * 23 22 21 46 46 H 1.09003 * 109.58542 * 66.42905 * 26 14 13 47 47 H 1.08996 * 109.59365 * 186.85146 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 1 0.6236 -2.5570 -0.8889 11 6 0.3732 -2.5829 1.2513 12 6 -0.4172 -3.8932 1.2352 13 6 0.5546 -5.0718 1.2465 14 7 1.5000 -4.9231 0.1316 15 6 1.6755 -5.9206 -0.7576 16 8 2.4552 -5.7836 -1.6765 17 6 0.9030 -7.2060 -0.6102 18 6 1.2849 -8.1631 -1.7410 19 6 0.5010 -9.4685 -1.5909 20 6 0.8834 -10.4258 -2.7215 21 6 0.0990 -11.7310 -2.5718 22 16 0.5530 -12.8663 -3.9117 23 7 -0.3570 -14.2213 -3.6313 24 8 1.8948 -13.3079 -3.7580 25 8 0.0807 -12.3785 -5.1600 26 6 2.2460 -3.6640 0.0010 27 1 -0.4850 0.8400 0.0004 28 1 1.0033 -2.5498 2.1401 29 1 -0.3194 -1.7412 1.2659 30 1 -1.0597 -3.9415 2.1144 31 1 -1.0290 -3.9380 0.3340 32 1 -0.0007 -6.0028 1.1328 33 1 1.1007 -5.0824 2.1897 34 1 -0.1654 -6.9954 -0.6582 35 1 1.1402 -7.6644 0.3499 36 1 2.3533 -8.3739 -1.6934 37 1 1.0474 -7.7046 -2.7010 38 1 -0.5674 -9.2581 -1.6383 39 1 0.7388 -9.9268 -0.6311 40 1 1.9519 -10.6361 -2.6738 41 1 0.6458 -9.9677 -3.6816 42 1 -0.9694 -11.5203 -2.6198 43 1 0.3362 -12.1893 -1.6117 44 1 0.0783 -15.0740 -3.4758 45 1 -1.3250 -14.1613 -3.6187 46 1 2.9329 -3.5575 0.8407 47 1 2.8063 -3.6664 -0.9339 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329367097.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:06:49 Heat of formation + Delta-G solvation = -172.043852 kcal Electronic energy + Delta-G solvation = -26095.420908 eV Core-core repulsion = 22209.688133 eV Total energy + Delta-G solvation = -3885.732775 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.09447 -38.50322 -38.11261 -37.05868 -36.91679 -35.37364 -33.97900 -33.56693 -32.93064 -31.91800 -28.77333 -26.98018 -26.00842 -23.87666 -23.25645 -22.09573 -21.29423 -20.31421 -19.65355 -18.57151 -18.36966 -18.21182 -17.79170 -17.21052 -17.00199 -16.74004 -16.49271 -16.28747 -15.73499 -15.10581 -14.94372 -14.85681 -14.51394 -14.40523 -14.13700 -13.73581 -13.58837 -13.37860 -13.22176 -13.18821 -13.08460 -12.96303 -12.90356 -12.75433 -12.64881 -12.48516 -12.04785 -12.01023 -11.90418 -11.84191 -11.67494 -11.59018 -11.41227 -11.26241 -10.98439 -10.84957 -10.61898 -10.43340 -9.45884 -8.12296 -6.27412 -0.64704 1.39172 1.40514 1.50384 1.72859 2.04320 2.18478 2.42943 2.88334 3.14004 3.35015 3.52973 3.74367 3.90733 3.91159 4.13057 4.18812 4.28929 4.36804 4.41458 4.52843 4.56297 4.57596 4.67212 4.73638 4.81407 4.88750 4.91170 4.91826 4.98189 5.02029 5.13518 5.15723 5.30499 5.31361 5.38399 5.47959 5.51201 5.59525 5.60864 5.92666 6.13560 6.33876 6.43624 6.63445 6.82215 7.29485 7.40635 8.91280 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.030715 B = 0.001730 C = 0.001698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.394426 B =16177.595126 C =16485.075425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.016 3.984 3 Si 0.955 3.045 4 H -0.281 1.281 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.539 4.539 8 H 0.050 0.950 9 C 0.041 3.959 10 H -0.016 1.016 11 C -0.106 4.106 12 C -0.129 4.129 13 C 0.110 3.890 14 N -0.611 5.611 15 C 0.495 3.505 16 O -0.603 6.603 17 C -0.127 4.127 18 C -0.110 4.110 19 C -0.101 4.101 20 C -0.132 4.132 21 C -0.603 4.603 22 S 2.624 3.376 23 N -1.237 6.237 24 O -1.005 7.005 25 O -1.009 7.009 26 C 0.128 3.872 27 H 0.262 0.738 28 H 0.036 0.964 29 H 0.061 0.939 30 H 0.091 0.909 31 H 0.044 0.956 32 H 0.121 0.879 33 H 0.080 0.920 34 H 0.116 0.884 35 H 0.126 0.874 36 H 0.055 0.945 37 H 0.047 0.953 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.163 0.837 43 H 0.165 0.835 44 H 0.426 0.574 45 H 0.428 0.572 46 H 0.058 0.942 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.231 -29.084 3.435 30.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.183 4.183 3 Si 0.780 3.220 4 H -0.207 1.207 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.578 4.578 8 H 0.069 0.931 9 C 0.022 3.978 10 H 0.002 0.998 11 C -0.145 4.145 12 C -0.167 4.167 13 C -0.012 4.012 14 N -0.343 5.343 15 C 0.285 3.715 16 O -0.485 6.485 17 C -0.167 4.167 18 C -0.149 4.149 19 C -0.140 4.140 20 C -0.171 4.171 21 C -0.736 4.736 22 S 2.718 3.282 23 N -0.912 5.912 24 O -0.996 6.996 25 O -0.999 6.999 26 C 0.005 3.995 27 H 0.071 0.929 28 H 0.055 0.945 29 H 0.079 0.921 30 H 0.110 0.890 31 H 0.063 0.937 32 H 0.139 0.861 33 H 0.098 0.902 34 H 0.134 0.866 35 H 0.144 0.856 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.105 0.895 39 H 0.110 0.890 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.181 0.819 43 H 0.182 0.818 44 H 0.257 0.743 45 H 0.257 0.743 46 H 0.077 0.923 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.256 -28.669 2.194 29.426 hybrid contribution 0.080 1.477 0.111 1.483 sum -6.176 -27.192 2.305 27.979 Atomic orbital electron populations 1.70003 1.07026 1.27217 1.50881 1.25692 0.95739 1.02260 0.94587 0.85606 0.78866 0.79408 0.78070 1.20660 1.20375 1.19227 1.21453 0.93026 0.92050 1.51253 0.93145 1.18875 0.93173 0.91627 0.94162 0.99773 1.21421 0.98740 0.97349 0.96949 1.21849 0.97920 0.94954 1.01943 1.21924 0.90565 0.99910 0.88764 1.48453 1.42338 1.14908 1.28581 1.21763 0.82591 0.86627 0.80489 1.90641 1.40424 1.82870 1.34555 1.21764 1.01348 0.90714 1.02833 1.21389 1.00621 0.95336 0.97526 1.21516 1.01016 0.92714 0.98737 1.21469 1.00292 0.93819 1.01497 1.30422 1.12638 1.10715 1.19802 1.04181 0.72936 0.74932 0.76149 1.52974 1.20670 1.25439 1.92127 1.93555 1.37488 1.80591 1.87922 1.93579 1.81891 1.82026 1.42354 1.21501 0.94571 0.83351 1.00041 0.92908 0.94499 0.92058 0.89026 0.93704 0.86098 0.90150 0.86626 0.85597 0.92640 0.93364 0.89511 0.89026 0.90687 0.91032 0.81938 0.81756 0.74303 0.74256 0.92323 0.93368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.38 11.32 21.45 0.24 -52.14 16 2 C 0.02 0.91 5.30 84.65 0.45 1.36 16 3 Si 0.95 44.01 29.54 68.60 2.03 46.04 16 4 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 5 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 6 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 7 C -0.54 -30.30 8.56 25.60 0.22 -30.09 16 8 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 9 C 0.04 2.08 2.25 -11.46 -0.03 2.05 16 10 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 11 C -0.11 -4.73 4.96 30.62 0.15 -4.58 16 12 C -0.13 -4.12 6.06 30.53 0.19 -3.94 16 13 C 0.11 2.82 6.31 86.22 0.54 3.36 16 14 N -0.61 -21.49 2.98 -819.75 -2.44 -23.93 16 15 C 0.49 16.77 7.70 87.66 0.67 17.45 16 16 O -0.60 -26.47 15.40 -3.04 -0.05 -26.51 16 17 C -0.13 -2.51 4.05 29.85 0.12 -2.39 16 18 C -0.11 -2.19 4.50 30.59 0.14 -2.06 16 19 C -0.10 -1.09 5.22 30.60 0.16 -0.93 16 20 C -0.13 -1.57 5.22 30.60 0.16 -1.41 16 21 C -0.60 -2.94 6.18 71.98 0.44 -2.49 16 22 S 2.62 30.67 5.97 -56.49 -0.34 30.33 16 23 N -1.24 -4.53 9.39 37.02 0.35 -4.18 16 24 O -1.01 -20.54 18.08 -127.65 -2.31 -22.85 16 25 O -1.01 -21.56 18.10 -127.65 -2.31 -23.87 16 26 C 0.13 5.72 5.66 86.36 0.49 6.21 16 27 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 28 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.06 3.15 6.05 -2.38 -0.01 3.13 16 30 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 32 H 0.12 1.96 5.93 -2.39 -0.01 1.94 16 33 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.12 1.78 7.68 -2.38 -0.02 1.76 16 35 H 0.13 1.62 7.95 -2.39 -0.02 1.60 16 36 H 0.05 1.27 8.10 -2.39 -0.02 1.25 16 37 H 0.05 1.18 8.10 -2.39 -0.02 1.16 16 38 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.16 -0.10 8.14 -2.39 -0.02 -0.12 16 43 H 0.16 -0.08 8.14 -2.39 -0.02 -0.10 16 44 H 0.43 0.83 8.92 -96.75 -0.86 -0.03 16 45 H 0.43 -0.61 8.96 -96.75 -0.87 -1.48 16 46 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 47 H 0.05 2.40 7.00 -2.39 -0.02 2.38 16 Total: -1.00 -88.04 386.54 -1.88 -89.91 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -0.76 Total: 4.63 kcal Atomic # 6 Polarization: -21.15 SS G_CDS: 3.71 Total: -17.44 kcal Atomic # 7 Polarization: -78.40 SS G_CDS: -1.85 Total: -80.25 kcal Atomic # 8 Polarization: -68.57 SS G_CDS: -4.67 Total: -73.24 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Atomic # 16 Polarization: 30.67 SS G_CDS: -0.34 Total: 30.33 kcal Total: -88.04 -1.88 -89.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329367097.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.129 kcal (2) G-P(sol) polarization free energy of solvation -88.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds