Wall clock time and date at job start Sat Apr 11 2020 03:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 N 1.41602 * 113.99946 * 2 1 4 4 C 1.46496 * 120.00279 * 269.99799 * 3 2 1 5 5 C 1.50699 * 109.47307 * 255.00099 * 4 3 2 6 6 C 1.38234 * 119.99651 * 269.72778 * 5 4 3 7 7 C 1.38231 * 119.99903 * 179.76428 * 6 5 4 8 8 C 1.38238 * 120.00091 * 0.50168 * 7 6 5 9 9 C 1.38239 * 119.99655 * 359.75322 * 8 7 6 10 10 C 1.38230 * 120.00346 * 89.99514 * 5 4 3 11 11 C 1.34783 * 119.99875 * 89.99309 * 3 2 1 12 12 O 1.21346 * 119.99849 * 179.97438 * 11 3 2 13 13 C 1.49451 * 119.99856 * 0.02562 * 11 3 2 14 14 O 1.21346 * 120.00042 * 5.27236 * 13 11 3 15 15 N 1.34784 * 119.99647 * 185.26417 * 13 11 3 16 16 C 1.46500 * 119.99663 * 185.07614 * 15 13 11 17 17 C 1.52999 * 109.46852 * 184.48030 * 16 15 13 18 18 C 1.50702 * 115.55083 * 294.91667 * 17 16 15 19 19 H 1.08001 * 120.00056 * 117.06026 * 18 17 16 20 20 C 1.37874 * 119.99705 * 296.79071 * 18 17 16 21 21 N 1.31510 * 120.00011 * 172.23291 * 20 18 17 22 22 Si 1.86806 * 120.00042 * 352.22459 * 20 18 17 23 23 H 1.48499 * 109.46872 * 94.19217 * 22 20 18 24 24 H 1.48506 * 109.46898 * 214.18815 * 22 20 18 25 25 H 1.48493 * 109.47303 * 334.18981 * 22 20 18 26 26 C 1.53004 * 117.50063 * 80.58811 * 17 16 15 27 27 C 1.53002 * 117.49860 * 149.24837 * 17 16 15 28 28 H 1.09006 * 109.47128 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47422 * 299.99762 * 1 2 3 30 30 H 1.08998 * 109.47140 * 60.00347 * 1 2 3 31 31 H 1.09001 * 109.46645 * 14.99526 * 4 3 2 32 32 H 1.09002 * 109.47389 * 134.99645 * 4 3 2 33 33 H 1.08001 * 120.00466 * 359.97438 * 6 5 4 34 34 H 1.08002 * 120.00428 * 180.22719 * 7 6 5 35 35 H 1.07995 * 120.00251 * 179.72245 * 8 7 6 36 36 H 1.07999 * 119.99775 * 179.97438 * 9 8 7 37 37 H 1.08002 * 120.00186 * 0.02562 * 10 5 4 38 38 H 0.96990 * 120.00026 * 5.07604 * 15 13 11 39 39 H 1.09000 * 109.47558 * 64.47575 * 16 15 13 40 40 H 1.09009 * 109.46787 * 304.47480 * 16 15 13 41 41 H 0.97005 * 120.00050 * 179.97438 * 21 20 18 42 42 H 1.09000 * 117.49795 * 215.00626 * 26 17 16 43 43 H 1.09005 * 117.49803 * 0.02562 * 26 17 16 44 44 H 1.08999 * 117.49642 * 359.97204 * 27 17 16 45 45 H 1.08998 * 117.50049 * 144.97319 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0049 1.2936 0.0000 4 6 2.3029 1.9628 -1.2687 5 6 3.7883 1.9250 -1.5198 6 6 4.5930 2.9514 -1.0616 7 6 5.9562 2.9143 -1.2877 8 6 6.5134 1.8561 -1.9810 9 6 5.7079 0.8323 -2.4438 10 6 4.3454 0.8668 -2.2131 11 6 2.2789 1.9093 1.1673 12 8 2.7728 3.0177 1.1673 13 6 1.9753 1.2264 2.4615 14 8 1.5720 0.0819 2.4637 15 7 2.1497 1.8818 3.6263 16 6 1.9594 1.1791 4.8977 17 6 2.1070 2.1693 6.0546 18 6 3.4771 2.7745 6.2215 19 1 3.6144 3.8397 6.1079 20 6 4.5542 1.9690 6.5245 21 7 5.7708 2.4685 6.5199 22 14 4.2856 0.1681 6.9418 23 1 4.4465 -0.6535 5.7153 24 1 5.2815 -0.2585 7.9575 25 1 2.9155 -0.0153 7.4843 26 6 0.9007 3.0486 6.3903 27 6 1.2944 1.9003 7.3228 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.7842 1.4515 -2.0796 32 1 1.9688 2.9992 -1.2200 33 1 4.1572 3.7805 -0.5241 34 1 6.5855 3.7144 -0.9266 35 1 7.5778 1.8294 -2.1616 36 1 6.1431 0.0058 -2.9858 37 1 3.7161 0.0673 -2.5752 38 1 2.4011 2.8185 3.6228 39 1 2.7085 0.3932 4.9942 40 1 0.9634 0.7368 4.9228 41 1 6.5286 1.9019 6.7335 42 1 1.0981 4.0648 6.7317 43 1 0.0017 2.9213 5.7871 44 1 0.6543 1.0181 7.3326 45 1 1.7509 2.1606 8.2777 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330222422.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:06:52 Heat of formation + Delta-G solvation = 2.429665 kcal Electronic energy + Delta-G solvation = -28913.192268 eV Core-core repulsion = 24899.581282 eV Total energy + Delta-G solvation = -4013.610986 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.51987 -39.23045 -38.26328 -37.42770 -36.96216 -34.00268 -33.40802 -32.19274 -31.02443 -30.89062 -27.71035 -26.97025 -26.38707 -25.29773 -23.04228 -22.60675 -21.67969 -21.20190 -19.96151 -19.45005 -18.30957 -17.36187 -16.78364 -16.51023 -16.12340 -15.85877 -15.29097 -15.12909 -15.08832 -14.95981 -14.66773 -14.35287 -13.99210 -13.74377 -13.42607 -13.30672 -13.07874 -12.87672 -12.72909 -12.51585 -12.33286 -12.18784 -11.99561 -11.47225 -11.20223 -11.07360 -10.99202 -10.74605 -10.62937 -10.52155 -10.30464 -9.63216 -9.35511 -9.24406 -9.18668 -8.89998 -8.87479 -8.76025 -8.49706 -8.43136 -6.17541 -4.19930 1.07166 1.41918 1.63988 1.92411 3.09621 3.27852 3.37950 3.42242 3.53328 3.79688 4.37166 4.41420 4.65687 4.70919 4.84626 4.97088 5.00985 5.05829 5.11483 5.18281 5.20160 5.25347 5.28770 5.51595 5.54355 5.60964 5.61953 5.90817 5.93164 6.05059 6.07991 6.11703 6.14798 6.37411 6.42024 6.44004 6.52326 6.55602 6.66041 6.81989 6.91314 6.97868 7.06453 7.14500 7.63941 7.65941 8.03123 8.40210 8.46954 8.85074 9.45516 10.93440 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012122 B = 0.003856 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.232416 B = 7259.416929 C = 8418.786947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.002 3.998 2 O -0.117 6.117 3 N -0.458 5.458 4 C 0.161 3.839 5 C -0.117 4.117 6 C -0.084 4.084 7 C -0.125 4.125 8 C -0.112 4.112 9 C -0.130 4.130 10 C -0.096 4.096 11 C 0.519 3.481 12 O -0.494 6.494 13 C 0.495 3.505 14 O -0.518 6.518 15 N -0.668 5.668 16 C 0.152 3.848 17 C -0.019 4.019 18 C -0.492 4.492 19 H 0.080 0.920 20 C 0.084 3.916 21 N -0.888 5.888 22 Si 0.863 3.137 23 H -0.278 1.278 24 H -0.290 1.290 25 H -0.248 1.248 26 C -0.179 4.179 27 C -0.183 4.183 28 H 0.106 0.894 29 H 0.054 0.946 30 H 0.046 0.954 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.135 0.865 34 H 0.124 0.876 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.418 0.582 39 H 0.062 0.938 40 H 0.056 0.944 41 H 0.266 0.734 42 H 0.087 0.913 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.668 -2.056 -18.020 19.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 O -0.121 6.121 3 N -0.238 5.238 4 C 0.042 3.958 5 C -0.119 4.119 6 C -0.102 4.102 7 C -0.143 4.143 8 C -0.130 4.130 9 C -0.148 4.148 10 C -0.115 4.115 11 C 0.303 3.697 12 O -0.367 6.367 13 C 0.274 3.726 14 O -0.395 6.395 15 N -0.319 5.319 16 C 0.029 3.971 17 C -0.020 4.020 18 C -0.529 4.529 19 H 0.098 0.902 20 C -0.120 4.120 21 N -0.524 5.524 22 Si 0.690 3.310 23 H -0.204 1.204 24 H -0.217 1.217 25 H -0.172 1.172 26 C -0.217 4.217 27 C -0.222 4.222 28 H 0.124 0.876 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.117 0.883 32 H 0.113 0.887 33 H 0.153 0.847 34 H 0.142 0.858 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.255 0.745 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.105 0.895 43 H 0.091 0.909 44 H 0.089 0.911 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.367 -2.476 -17.946 19.557 hybrid contribution 0.004 -0.738 0.298 0.796 sum -7.363 -3.213 -17.648 19.391 Atomic orbital electron populations 1.23295 0.81668 1.03918 1.00672 1.90782 1.20010 1.04670 1.96622 1.49978 1.57721 1.10840 1.05237 1.20651 0.92537 0.98176 0.84432 1.20003 0.95386 0.96032 1.00434 1.21346 0.93625 0.98571 0.96708 1.21226 0.95240 0.98852 0.98976 1.21220 0.99747 0.94323 0.97755 1.21096 0.93745 0.98881 1.01126 1.21024 0.95249 0.97113 0.98096 1.20722 0.78982 0.85209 0.84809 1.90771 1.41748 1.18234 1.85985 1.19785 0.80885 0.86947 0.84948 1.90735 1.44637 1.17046 1.87079 1.45721 1.65923 1.15888 1.04386 1.21245 0.99454 0.94675 0.81688 1.19590 0.93506 0.97119 0.91796 1.20231 0.87830 0.95615 1.49213 0.90247 1.24914 0.94760 0.98333 0.93955 1.69899 0.98389 1.36793 1.47302 0.87084 0.79504 0.85772 0.78665 1.20395 1.21664 1.17169 1.22808 0.98442 0.96090 1.04321 1.23049 1.04349 0.98439 0.96342 0.87556 0.92708 0.93526 0.88319 0.88651 0.84716 0.85822 0.86169 0.86155 0.86114 0.74508 0.92029 0.92617 0.92427 0.89468 0.90891 0.91084 0.89168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.03 10.85 101.05 1.10 1.12 16 2 O -0.12 -1.68 9.71 -33.84 -0.33 -2.01 16 3 N -0.46 -6.60 3.01 -61.91 -0.19 -6.79 16 4 C 0.16 1.80 5.85 -5.20 -0.03 1.77 16 5 C -0.12 -1.47 5.25 -104.63 -0.55 -2.02 16 6 C -0.08 -1.13 8.78 -39.59 -0.35 -1.48 16 7 C -0.12 -1.57 10.05 -39.58 -0.40 -1.97 16 8 C -0.11 -1.28 10.05 -39.58 -0.40 -1.68 16 9 C -0.13 -1.45 10.05 -39.58 -0.40 -1.85 16 10 C -0.10 -1.12 9.70 -39.59 -0.38 -1.50 16 11 C 0.52 8.94 7.64 -11.58 -0.09 8.85 16 12 O -0.49 -8.87 14.06 5.50 0.08 -8.80 16 13 C 0.50 9.60 7.85 -11.58 -0.09 9.51 16 14 O -0.52 -10.69 14.04 -16.87 -0.24 -10.92 16 15 N -0.67 -13.46 5.46 -60.73 -0.33 -13.79 16 16 C 0.15 3.24 5.14 -4.04 -0.02 3.22 16 17 C -0.02 -0.41 0.85 -155.66 -0.13 -0.55 16 18 C -0.49 -13.02 9.15 -34.44 -0.32 -13.33 16 19 H 0.08 2.29 8.06 -52.49 -0.42 1.87 16 20 C 0.08 2.35 5.46 -17.82 -0.10 2.25 16 21 N -0.89 -26.43 13.96 55.43 0.77 -25.65 16 22 Si 0.86 21.20 24.96 -169.99 -4.24 16.96 16 23 H -0.28 -6.99 7.00 56.52 0.40 -6.59 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 H -0.25 -5.66 5.79 56.52 0.33 -5.33 16 26 C -0.18 -3.40 9.96 -26.69 -0.27 -3.67 16 27 C -0.18 -3.67 8.15 -26.69 -0.22 -3.89 16 28 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.05 0.66 7.66 -51.93 -0.40 0.26 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.10 0.81 8.08 -51.93 -0.42 0.39 16 32 H 0.10 0.97 7.84 -51.93 -0.41 0.56 16 33 H 0.14 1.88 6.78 -52.49 -0.36 1.52 16 34 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 35 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 36 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 37 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 38 H 0.42 8.40 7.84 -40.82 -0.32 8.08 16 39 H 0.06 1.45 4.93 -51.93 -0.26 1.19 16 40 H 0.06 1.10 8.06 -51.92 -0.42 0.68 16 41 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 42 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 43 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 45 H 0.09 1.85 8.14 -51.93 -0.42 1.43 16 LS Contribution 378.51 15.07 5.70 5.70 Total: -1.00 -31.80 378.51 -7.85 -39.65 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: -6.44 Total: 10.86 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: -2.64 Total: -5.21 kcal Atomic # 7 Polarization: -46.49 SS G_CDS: 0.26 Total: -46.23 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: -0.49 Total: -21.73 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.24 Total: 16.96 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.80 -7.85 -39.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330222422.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.075 kcal (2) G-P(sol) polarization free energy of solvation -31.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds