Wall clock time and date at job start Sat Apr 11 2020 03:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 N 1.41602 * 113.99946 * 2 1 4 4 C 1.46496 * 120.00279 * 269.99799 * 3 2 1 5 5 C 1.50699 * 109.47307 * 255.00099 * 4 3 2 6 6 C 1.38234 * 119.99651 * 269.72778 * 5 4 3 7 7 C 1.38231 * 119.99903 * 179.76428 * 6 5 4 8 8 C 1.38238 * 120.00091 * 0.50168 * 7 6 5 9 9 C 1.38239 * 119.99655 * 359.75322 * 8 7 6 10 10 C 1.38230 * 120.00346 * 89.99514 * 5 4 3 11 11 C 1.34783 * 119.99875 * 89.99309 * 3 2 1 12 12 O 1.21346 * 119.99849 * 179.97438 * 11 3 2 13 13 C 1.49451 * 119.99856 * 0.02562 * 11 3 2 14 14 O 1.21346 * 120.00042 * 5.27236 * 13 11 3 15 15 N 1.34784 * 119.99647 * 185.26417 * 13 11 3 16 16 C 1.46500 * 119.99663 * 185.07614 * 15 13 11 17 17 C 1.52999 * 109.46852 * 184.48030 * 16 15 13 18 18 C 1.50702 * 115.55083 * 294.91667 * 17 16 15 19 19 H 1.08001 * 120.00056 * 117.06026 * 18 17 16 20 20 C 1.37874 * 119.99705 * 296.79071 * 18 17 16 21 21 N 1.31510 * 120.00011 * 172.23291 * 20 18 17 22 22 Si 1.86806 * 120.00042 * 352.22459 * 20 18 17 23 23 H 1.48499 * 109.46872 * 94.19217 * 22 20 18 24 24 H 1.48506 * 109.46898 * 214.18815 * 22 20 18 25 25 H 1.48493 * 109.47303 * 334.18981 * 22 20 18 26 26 C 1.53004 * 117.50063 * 80.58811 * 17 16 15 27 27 C 1.53002 * 117.49860 * 149.24837 * 17 16 15 28 28 H 1.09006 * 109.47128 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47422 * 299.99762 * 1 2 3 30 30 H 1.08998 * 109.47140 * 60.00347 * 1 2 3 31 31 H 1.09001 * 109.46645 * 14.99526 * 4 3 2 32 32 H 1.09002 * 109.47389 * 134.99645 * 4 3 2 33 33 H 1.08001 * 120.00466 * 359.97438 * 6 5 4 34 34 H 1.08002 * 120.00428 * 180.22719 * 7 6 5 35 35 H 1.07995 * 120.00251 * 179.72245 * 8 7 6 36 36 H 1.07999 * 119.99775 * 179.97438 * 9 8 7 37 37 H 1.08002 * 120.00186 * 0.02562 * 10 5 4 38 38 H 0.96990 * 120.00026 * 5.07604 * 15 13 11 39 39 H 1.09000 * 109.47558 * 64.47575 * 16 15 13 40 40 H 1.09009 * 109.46787 * 304.47480 * 16 15 13 41 41 H 0.97005 * 120.00050 * 179.97438 * 21 20 18 42 42 H 1.09000 * 117.49795 * 215.00626 * 26 17 16 43 43 H 1.09005 * 117.49803 * 0.02562 * 26 17 16 44 44 H 1.08999 * 117.49642 * 359.97204 * 27 17 16 45 45 H 1.08998 * 117.50049 * 144.97319 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0049 1.2936 0.0000 4 6 2.3029 1.9628 -1.2687 5 6 3.7883 1.9250 -1.5198 6 6 4.5930 2.9514 -1.0616 7 6 5.9562 2.9143 -1.2877 8 6 6.5134 1.8561 -1.9810 9 6 5.7079 0.8323 -2.4438 10 6 4.3454 0.8668 -2.2131 11 6 2.2789 1.9093 1.1673 12 8 2.7728 3.0177 1.1673 13 6 1.9753 1.2264 2.4615 14 8 1.5720 0.0819 2.4637 15 7 2.1497 1.8818 3.6263 16 6 1.9594 1.1791 4.8977 17 6 2.1070 2.1693 6.0546 18 6 3.4771 2.7745 6.2215 19 1 3.6144 3.8397 6.1079 20 6 4.5542 1.9690 6.5245 21 7 5.7708 2.4685 6.5199 22 14 4.2856 0.1681 6.9418 23 1 4.4465 -0.6535 5.7153 24 1 5.2815 -0.2585 7.9575 25 1 2.9155 -0.0153 7.4843 26 6 0.9007 3.0486 6.3903 27 6 1.2944 1.9003 7.3228 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.7842 1.4515 -2.0796 32 1 1.9688 2.9992 -1.2200 33 1 4.1572 3.7805 -0.5241 34 1 6.5855 3.7144 -0.9266 35 1 7.5778 1.8294 -2.1616 36 1 6.1431 0.0058 -2.9858 37 1 3.7161 0.0673 -2.5752 38 1 2.4011 2.8185 3.6228 39 1 2.7085 0.3932 4.9942 40 1 0.9634 0.7368 4.9228 41 1 6.5286 1.9019 6.7335 42 1 1.0981 4.0648 6.7317 43 1 0.0017 2.9213 5.7871 44 1 0.6543 1.0181 7.3326 45 1 1.7509 2.1606 8.2777 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330222422.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:06:51 Heat of formation + Delta-G solvation = -17.037497 kcal Electronic energy + Delta-G solvation = -28914.036428 eV Core-core repulsion = 24899.581282 eV Total energy + Delta-G solvation = -4014.455146 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.82605 -40.36020 -39.55311 -38.69798 -38.46013 -35.22839 -34.75865 -34.28825 -32.05039 -31.79190 -29.19553 -28.07764 -27.65767 -27.00219 -24.33499 -23.51523 -23.21453 -22.27005 -21.34094 -21.04138 -19.82545 -18.57201 -18.25364 -17.87507 -17.40587 -17.09748 -16.87583 -16.58886 -16.21242 -15.99212 -15.89496 -15.58054 -15.28749 -15.16006 -14.85611 -14.78071 -14.30999 -14.20550 -14.05841 -13.79738 -13.64460 -13.35682 -13.05740 -12.99050 -12.69998 -12.62832 -12.20775 -12.17663 -12.09860 -11.88511 -11.55904 -11.46332 -11.04629 -10.76697 -10.72689 -10.36414 -10.34149 -10.07192 -9.82369 -9.73647 -8.32225 -6.36113 0.09630 0.24784 0.49735 0.88075 1.30681 1.36485 1.46936 1.73470 2.09884 2.33463 2.86489 2.91824 3.15323 3.39087 3.69760 3.82461 3.92185 3.96308 4.13658 4.25491 4.26448 4.28929 4.39392 4.42666 4.43064 4.46283 4.47463 4.63267 4.71310 4.72565 4.75775 4.92355 5.04169 5.05163 5.05878 5.14760 5.21832 5.31383 5.52863 5.53071 5.60597 5.62156 5.66752 5.92458 6.08864 6.27682 6.33248 6.59521 6.71463 6.92294 7.31850 8.82487 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012122 B = 0.003856 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.232416 B = 7259.416929 C = 8418.786947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.002 4.002 2 O -0.136 6.136 3 N -0.447 5.447 4 C 0.159 3.841 5 C -0.129 4.129 6 C -0.106 4.106 7 C -0.144 4.144 8 C -0.119 4.119 9 C -0.134 4.134 10 C -0.101 4.101 11 C 0.515 3.485 12 O -0.511 6.511 13 C 0.493 3.507 14 O -0.531 6.531 15 N -0.674 5.674 16 C 0.159 3.841 17 C -0.048 4.048 18 C -0.480 4.480 19 H 0.040 0.960 20 C 0.031 3.969 21 N -0.940 5.940 22 Si 0.916 3.084 23 H -0.289 1.289 24 H -0.294 1.294 25 H -0.215 1.215 26 C -0.156 4.156 27 C -0.174 4.174 28 H 0.126 0.874 29 H 0.038 0.962 30 H 0.077 0.923 31 H 0.135 0.865 32 H 0.103 0.897 33 H 0.121 0.879 34 H 0.128 0.872 35 H 0.141 0.859 36 H 0.146 0.854 37 H 0.142 0.858 38 H 0.415 0.585 39 H 0.037 0.963 40 H 0.079 0.921 41 H 0.264 0.736 42 H 0.083 0.917 43 H 0.102 0.898 44 H 0.099 0.901 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.006 -3.897 -19.368 22.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 O -0.140 6.140 3 N -0.226 5.226 4 C 0.041 3.959 5 C -0.130 4.130 6 C -0.124 4.124 7 C -0.162 4.162 8 C -0.137 4.137 9 C -0.152 4.152 10 C -0.120 4.120 11 C 0.299 3.701 12 O -0.386 6.386 13 C 0.273 3.727 14 O -0.408 6.408 15 N -0.325 5.325 16 C 0.036 3.964 17 C -0.049 4.049 18 C -0.517 4.517 19 H 0.058 0.942 20 C -0.168 4.168 21 N -0.579 5.579 22 Si 0.742 3.258 23 H -0.216 1.216 24 H -0.221 1.221 25 H -0.137 1.137 26 C -0.193 4.193 27 C -0.212 4.212 28 H 0.144 0.856 29 H 0.056 0.944 30 H 0.095 0.905 31 H 0.153 0.847 32 H 0.121 0.879 33 H 0.139 0.861 34 H 0.146 0.854 35 H 0.159 0.841 36 H 0.164 0.836 37 H 0.160 0.840 38 H 0.252 0.748 39 H 0.055 0.945 40 H 0.097 0.903 41 H 0.073 0.927 42 H 0.102 0.898 43 H 0.121 0.879 44 H 0.117 0.883 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.754 -4.327 -19.315 22.067 hybrid contribution 0.702 -0.114 0.625 0.947 sum -9.052 -4.441 -18.690 21.236 Atomic orbital electron populations 1.23513 0.79628 1.05411 1.01339 1.90749 1.22180 1.04335 1.96723 1.49995 1.56635 1.10729 1.05216 1.20954 0.92236 0.98910 0.83771 1.20182 0.96035 0.96116 1.00716 1.21396 0.94364 0.99029 0.97647 1.21441 0.95239 0.99811 0.99716 1.21533 1.01049 0.93938 0.97160 1.21482 0.93746 0.99322 1.00677 1.21346 0.95886 0.97178 0.97574 1.20343 0.79566 0.85180 0.85030 1.90775 1.42780 1.18814 1.86270 1.20202 0.80141 0.86842 0.85558 1.90709 1.45130 1.17526 1.87483 1.45756 1.66339 1.15773 1.04647 1.21095 0.99810 0.93788 0.81701 1.19437 0.92241 0.99463 0.93790 1.20380 0.90302 0.93907 1.47160 0.94165 1.25646 0.94468 1.02293 0.94412 1.70039 0.99405 1.38353 1.50112 0.86238 0.80903 0.80889 0.77814 1.21569 1.22128 1.13712 1.22861 0.97624 0.95566 1.03251 1.23101 1.03375 0.99911 0.94829 0.85594 0.94366 0.90474 0.84727 0.87886 0.86149 0.85399 0.84094 0.83576 0.83987 0.74825 0.94482 0.90304 0.92701 0.89824 0.87923 0.88292 0.89890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.03 10.85 113.37 1.23 1.20 16 2 O -0.14 -3.62 9.71 -17.40 -0.17 -3.79 16 3 N -0.45 -12.23 3.01 -468.14 -1.41 -13.64 16 4 C 0.16 3.25 5.85 85.63 0.50 3.75 16 5 C -0.13 -3.12 5.25 -19.87 -0.10 -3.22 16 6 C -0.11 -2.90 8.78 22.27 0.20 -2.71 16 7 C -0.14 -3.68 10.05 22.27 0.22 -3.45 16 8 C -0.12 -2.60 10.05 22.27 0.22 -2.37 16 9 C -0.13 -2.72 10.05 22.27 0.22 -2.50 16 10 C -0.10 -2.14 9.70 22.27 0.22 -1.93 16 11 C 0.52 17.63 7.64 87.27 0.67 18.30 16 12 O -0.51 -18.69 14.06 -3.23 -0.05 -18.74 16 13 C 0.49 18.88 7.85 87.27 0.69 19.56 16 14 O -0.53 -21.33 14.04 18.16 0.25 -21.08 16 15 N -0.67 -27.02 5.46 -464.39 -2.54 -29.56 16 16 C 0.16 6.55 5.14 86.38 0.44 7.00 16 17 C -0.05 -2.06 0.85 -52.93 -0.04 -2.10 16 18 C -0.48 -25.92 9.15 25.60 0.23 -25.68 16 19 H 0.04 2.43 8.06 -2.91 -0.02 2.40 16 20 C 0.03 1.74 5.46 84.65 0.46 2.20 16 21 N -0.94 -58.22 13.96 21.45 0.30 -57.92 16 22 Si 0.92 44.04 24.96 68.60 1.71 45.76 16 23 H -0.29 -14.31 7.00 99.48 0.70 -13.62 16 24 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 25 H -0.22 -9.07 5.79 99.48 0.58 -8.49 16 26 C -0.16 -5.51 9.96 30.62 0.30 -5.20 16 27 C -0.17 -6.42 8.15 30.62 0.25 -6.17 16 28 H 0.13 1.85 8.14 -2.38 -0.02 1.83 16 29 H 0.04 0.84 7.66 -2.39 -0.02 0.83 16 30 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.13 1.74 8.08 -2.39 -0.02 1.72 16 32 H 0.10 1.96 7.84 -2.39 -0.02 1.94 16 33 H 0.12 3.55 6.78 -2.91 -0.02 3.53 16 34 H 0.13 2.97 8.06 -2.91 -0.02 2.95 16 35 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 36 H 0.15 2.13 8.06 -2.91 -0.02 2.10 16 37 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16 38 H 0.42 16.99 7.84 -92.72 -0.73 16.26 16 39 H 0.04 1.71 4.93 -2.39 -0.01 1.70 16 40 H 0.08 2.87 8.06 -2.38 -0.02 2.85 16 41 H 0.26 15.55 8.31 -92.70 -0.77 14.78 16 42 H 0.08 3.02 8.14 -2.39 -0.02 3.00 16 43 H 0.10 3.06 8.14 -2.38 -0.02 3.04 16 44 H 0.10 3.14 8.14 -2.39 -0.02 3.12 16 45 H 0.08 3.19 8.14 -2.39 -0.02 3.17 16 Total: -1.00 -71.05 378.51 3.96 -67.08 By element: Atomic # 1 Polarization: 35.07 SS G_CDS: 0.14 Total: 35.21 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: 5.71 Total: -3.33 kcal Atomic # 7 Polarization: -97.47 SS G_CDS: -3.64 Total: -101.12 kcal Atomic # 8 Polarization: -43.64 SS G_CDS: 0.04 Total: -43.60 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 1.71 Total: 45.76 kcal Total: -71.05 3.96 -67.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330222422.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.047 kcal (2) G-P(sol) polarization free energy of solvation -71.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds