Wall clock time and date at job start Sat Apr 11 2020 03:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99525 * 2 1 4 4 H 1.48499 * 109.47278 * 270.00093 * 3 2 1 5 5 H 1.48504 * 109.47169 * 29.99886 * 3 2 1 6 6 H 1.48497 * 109.47232 * 149.99607 * 3 2 1 7 7 C 1.38802 * 120.00376 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00198 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00113 * 359.97438 * 7 2 1 10 10 C 1.46501 * 120.00025 * 180.27621 * 9 7 2 11 11 C 1.53003 * 109.46846 * 179.72862 * 10 9 7 12 12 H 1.08993 * 112.85418 * 316.19363 * 11 10 9 13 13 C 1.53786 * 113.61485 * 87.50542 * 11 10 9 14 14 C 1.53780 * 87.08083 * 139.97755 * 13 11 10 15 15 H 1.09002 * 113.61319 * 220.01650 * 14 13 11 16 16 N 1.46500 * 113.69158 * 89.12717 * 14 13 11 17 17 C 1.34776 * 119.99947 * 107.46134 * 16 14 13 18 18 O 1.21585 * 120.00268 * 0.02562 * 17 16 14 19 19 C 1.47580 * 119.99678 * 180.02562 * 17 16 14 20 20 C 1.39761 * 120.07789 * 359.72531 * 19 17 16 21 21 C 1.37663 * 119.92586 * 179.76522 * 20 19 17 22 22 C 1.39139 * 120.07400 * 0.53603 * 21 20 19 23 23 N 1.39431 * 119.92601 * 179.72040 * 22 21 20 24 24 C 1.34776 * 119.99833 * 144.82012 * 23 22 21 25 25 N 1.34778 * 119.99450 * 184.57936 * 24 23 22 26 26 O 1.21572 * 120.00113 * 4.58480 * 24 23 22 27 27 C 1.39135 * 120.14674 * 359.69461 * 22 21 20 28 28 C 1.37661 * 120.07844 * 0.04623 * 27 22 21 29 29 C 1.53778 * 87.08492 * 334.56801 * 14 13 11 30 30 H 0.96998 * 120.00608 * 0.02562 * 1 2 3 31 31 H 0.97004 * 120.00030 * 0.02562 * 9 7 2 32 32 H 1.08999 * 109.47359 * 299.72862 * 10 9 7 33 33 H 1.08998 * 109.47329 * 59.72945 * 10 9 7 34 34 H 1.09000 * 113.61038 * 254.52577 * 13 11 10 35 35 H 1.08998 * 113.61055 * 25.42920 * 13 11 10 36 36 H 0.97003 * 119.99783 * 287.46576 * 16 14 13 37 37 H 1.08000 * 120.03306 * 0.02562 * 20 19 17 38 38 H 1.07993 * 119.96007 * 180.27255 * 21 20 19 39 39 H 0.96998 * 119.99914 * 324.82502 * 23 22 21 40 40 H 0.97001 * 120.00193 * 0.02562 * 25 24 23 41 41 H 0.97000 * 119.99291 * 180.02562 * 25 24 23 42 42 H 1.08006 * 119.96155 * 180.02562 * 27 22 21 43 43 H 1.07999 * 120.04000 * 179.97438 * 28 27 22 44 44 H 1.09006 * 113.61639 * 270.88787 * 29 14 13 45 45 H 1.08997 * 113.62064 * 139.98335 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0466 -1.4000 5 1 1.4474 2.6527 0.7000 6 1 3.5476 1.4404 0.7001 7 6 2.0103 -1.2020 -0.0005 8 1 3.0902 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0583 -3.6567 0.0050 11 6 1.0641 -4.8196 0.0106 12 1 0.2383 -4.6672 0.7054 13 6 0.6167 -5.2544 -1.3950 14 6 0.7050 -6.7039 -0.8890 15 1 1.1233 -7.3966 -1.6194 16 7 -0.5375 -7.1939 -0.2869 17 6 -1.2939 -8.0963 -0.9426 18 8 -0.9450 -8.5042 -2.0335 19 6 -2.5457 -8.5895 -0.3362 20 6 -2.9454 -8.1261 0.9203 21 6 -4.1162 -8.5845 1.4809 22 6 -4.8957 -9.5166 0.8029 23 7 -6.0780 -9.9832 1.3761 24 6 -7.1406 -10.2630 0.5958 25 7 -8.3114 -10.6254 1.1564 26 8 -7.0429 -10.1887 -0.6137 27 6 -4.4983 -9.9836 -0.4460 28 6 -3.3314 -9.5253 -1.0147 29 6 1.7308 -6.1994 0.1395 30 1 -0.4851 0.8400 -0.0004 31 1 0.3557 -2.3881 -0.0005 32 1 2.6847 -3.7184 -0.8849 33 1 2.6852 -3.7103 0.8950 34 1 -0.3963 -4.9409 -1.6472 35 1 1.3403 -5.0196 -2.1756 36 1 -0.8157 -6.8688 0.5836 37 1 -2.3385 -7.4060 1.4490 38 1 -4.4278 -8.2235 2.4498 39 1 -6.1356 -10.1064 2.3365 40 1 -8.3894 -10.6844 2.1215 41 1 -9.0761 -10.8271 0.5947 42 1 -5.1058 -10.7068 -0.9698 43 1 -3.0233 -9.8886 -1.9840 44 1 2.7590 -6.2229 -0.2216 45 1 1.6173 -6.6488 1.1260 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330696419.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:06:54 Heat of formation + Delta-G solvation = -2.464748 kcal Electronic energy + Delta-G solvation = -26843.869349 eV Core-core repulsion = 22862.338876 eV Total energy + Delta-G solvation = -3981.530473 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.14440 -40.30166 -38.95747 -37.85494 -35.17328 -34.53578 -34.20634 -33.17071 -31.26136 -30.86349 -29.78478 -26.79187 -25.46191 -24.50851 -23.50646 -22.92205 -21.82292 -21.41121 -20.73695 -19.10931 -18.94378 -18.53544 -17.91703 -17.02808 -16.56248 -16.11982 -15.83314 -15.29153 -15.09532 -14.96426 -14.74281 -14.45878 -14.39863 -13.94703 -13.86947 -13.58961 -13.32779 -13.02623 -12.84176 -12.69066 -12.32191 -12.08769 -11.67926 -11.54003 -11.01361 -10.91688 -10.81241 -10.59749 -10.44556 -10.31172 -10.29110 -10.07075 -9.95222 -9.79145 -9.57800 -9.28239 -8.99905 -8.81954 -8.50156 -6.87275 -5.73273 -3.01371 0.55145 1.10884 2.19446 2.46800 2.85197 3.09419 3.45596 3.50486 3.52158 3.66517 3.81603 4.48679 4.57075 4.60495 4.64211 4.75334 4.86599 5.01290 5.08143 5.14593 5.18623 5.20210 5.60894 5.68139 5.72462 5.77034 5.81440 5.90604 5.97671 6.03052 6.08079 6.12627 6.16077 6.22810 6.29054 6.30480 6.35531 6.46710 6.62256 6.68603 6.81887 6.97358 7.24235 7.48710 7.72878 7.96336 8.18949 8.46002 9.56880 10.16452 10.50816 11.49710 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015659 B = 0.001965 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.627766 B =14248.904746 C =15447.366822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.732 5.732 10 C 0.162 3.838 11 C -0.113 4.113 12 H 0.087 0.913 13 C -0.139 4.139 14 C 0.116 3.884 15 H 0.100 0.900 16 N -0.705 5.705 17 C 0.562 3.438 18 O -0.539 6.539 19 C -0.149 4.149 20 C -0.064 4.064 21 C -0.153 4.153 22 C 0.183 3.817 23 N -0.684 5.684 24 C 0.705 3.295 25 N -0.861 5.861 26 O -0.570 6.570 27 C -0.130 4.130 28 C -0.039 4.039 29 C -0.138 4.138 30 H 0.254 0.746 31 H 0.383 0.617 32 H 0.020 0.980 33 H 0.018 0.982 34 H 0.069 0.931 35 H 0.091 0.909 36 H 0.400 0.600 37 H 0.132 0.868 38 H 0.132 0.868 39 H 0.409 0.591 40 H 0.399 0.601 41 H 0.419 0.581 42 H 0.147 0.853 43 H 0.140 0.860 44 H 0.095 0.905 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.682 -26.166 7.916 30.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.212 4.212 3 Si 0.738 3.262 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.035 3.965 11 C -0.132 4.132 12 H 0.105 0.895 13 C -0.178 4.178 14 C 0.011 3.989 15 H 0.118 0.882 16 N -0.355 5.355 17 C 0.350 3.650 18 O -0.417 6.417 19 C -0.153 4.153 20 C -0.083 4.083 21 C -0.174 4.174 22 C 0.088 3.912 23 N -0.332 5.332 24 C 0.403 3.597 25 N -0.429 5.429 26 O -0.446 6.446 27 C -0.150 4.150 28 C -0.059 4.059 29 C -0.176 4.176 30 H 0.064 0.936 31 H 0.217 0.783 32 H 0.038 0.962 33 H 0.036 0.964 34 H 0.087 0.913 35 H 0.109 0.891 36 H 0.236 0.764 37 H 0.150 0.850 38 H 0.150 0.850 39 H 0.245 0.755 40 H 0.227 0.773 41 H 0.252 0.748 42 H 0.164 0.836 43 H 0.158 0.842 44 H 0.113 0.887 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.117 -26.234 6.140 29.967 hybrid contribution -0.535 1.139 1.301 1.810 sum -13.652 -25.095 7.442 29.522 Atomic orbital electron populations 1.69659 1.05093 1.25566 1.57992 1.24741 0.95535 0.97687 1.03221 0.86188 0.78612 0.83883 0.77511 1.21754 1.21823 1.20801 1.19247 0.91033 0.84288 1.42354 0.91237 1.42350 1.05840 0.99996 1.89386 1.20642 0.93019 0.85220 0.97665 1.22762 0.99072 0.94226 0.97154 0.89484 1.23419 1.02560 0.94112 0.97664 1.21951 0.84309 0.96080 0.96597 0.88175 1.45595 1.23754 1.43663 1.22534 1.18171 0.83349 0.78679 0.84846 1.90773 1.72095 1.58464 1.20387 1.19965 0.97018 1.02042 0.96282 1.21096 0.95581 0.97797 0.93860 1.20776 0.96657 0.98051 1.01916 1.17664 0.85401 0.93900 0.94267 1.42454 1.11067 1.68989 1.10691 1.15947 0.80540 0.77795 0.85396 1.42967 1.12494 1.75914 1.11538 1.91020 1.83340 1.58179 1.12085 1.21287 0.96460 1.01817 0.95427 1.21190 0.92027 0.93303 0.99355 1.23318 0.98918 0.96537 0.98862 0.93578 0.78336 0.96189 0.96426 0.91259 0.89067 0.76436 0.85008 0.84984 0.75516 0.77279 0.74758 0.83572 0.84233 0.88669 0.91280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.62 13.06 55.49 0.72 -27.90 16 2 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 3 Si 0.91 22.69 29.55 -169.99 -5.02 17.67 16 4 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.73 -18.72 5.60 -59.91 -0.34 -19.06 16 10 C 0.16 3.24 6.10 -4.04 -0.02 3.21 16 11 C -0.11 -1.76 3.63 -89.80 -0.33 -2.09 16 12 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 13 C -0.14 -2.12 7.43 -25.92 -0.19 -2.32 16 14 C 0.12 1.51 4.32 -67.12 -0.29 1.22 16 15 H 0.10 1.38 7.46 -51.93 -0.39 1.00 16 16 N -0.70 -8.45 5.22 -54.04 -0.28 -8.73 16 17 C 0.56 7.70 7.76 -12.45 -0.10 7.61 16 18 O -0.54 -9.26 15.94 5.29 0.08 -9.18 16 19 C -0.15 -1.71 5.88 -104.95 -0.62 -2.33 16 20 C -0.06 -0.57 9.53 -39.22 -0.37 -0.94 16 21 C -0.15 -1.17 9.94 -39.46 -0.39 -1.56 16 22 C 0.18 1.59 6.30 -83.74 -0.53 1.06 16 23 N -0.68 -3.99 5.32 -14.22 -0.08 -4.06 16 24 C 0.70 5.35 8.67 -86.92 -0.75 4.60 16 25 N -0.86 -2.53 8.88 27.63 0.25 -2.29 16 26 O -0.57 -7.06 14.59 5.30 0.08 -6.98 16 27 C -0.13 -1.38 8.66 -39.46 -0.34 -1.72 16 28 C -0.04 -0.45 9.58 -39.22 -0.38 -0.83 16 29 C -0.14 -1.67 7.39 -25.92 -0.19 -1.86 16 30 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 31 H 0.38 10.31 7.67 -40.82 -0.31 10.00 16 32 H 0.02 0.41 7.84 -51.93 -0.41 0.00 16 33 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.09 1.42 7.90 -51.93 -0.41 1.01 16 36 H 0.40 3.88 6.72 -40.82 -0.27 3.60 16 37 H 0.13 0.89 6.39 -52.49 -0.34 0.56 16 38 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 39 H 0.41 0.81 8.83 -40.82 -0.36 0.45 16 40 H 0.40 -0.17 8.85 -40.82 -0.36 -0.53 16 41 H 0.42 0.97 8.93 -40.82 -0.36 0.61 16 42 H 0.15 1.66 6.21 -52.48 -0.33 1.33 16 43 H 0.14 1.64 7.64 -52.49 -0.40 1.23 16 44 H 0.09 1.09 8.10 -51.93 -0.42 0.67 16 45 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 379.48 15.07 5.72 5.72 Total: -1.00 -38.06 379.48 -9.64 -47.70 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -6.02 Total: 10.55 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: -4.75 Total: -3.43 kcal Atomic # 7 Polarization: -62.32 SS G_CDS: 0.28 Total: -62.04 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: 0.16 Total: -16.16 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -38.06 -9.64 -47.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330696419.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.231 kcal (2) G-P(sol) polarization free energy of solvation -38.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds