Wall clock time and date at job start Sat Apr 11 2020 03:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99525 * 2 1 4 4 H 1.48499 * 109.47278 * 270.00093 * 3 2 1 5 5 H 1.48504 * 109.47169 * 29.99886 * 3 2 1 6 6 H 1.48497 * 109.47232 * 149.99607 * 3 2 1 7 7 C 1.38802 * 120.00376 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00198 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00113 * 359.97438 * 7 2 1 10 10 C 1.46501 * 120.00025 * 180.27621 * 9 7 2 11 11 C 1.53003 * 109.46846 * 179.72862 * 10 9 7 12 12 H 1.08993 * 112.85418 * 316.19363 * 11 10 9 13 13 C 1.53786 * 113.61485 * 87.50542 * 11 10 9 14 14 C 1.53780 * 87.08083 * 139.97755 * 13 11 10 15 15 H 1.09002 * 113.61319 * 220.01650 * 14 13 11 16 16 N 1.46500 * 113.69158 * 89.12717 * 14 13 11 17 17 C 1.34776 * 119.99947 * 107.46134 * 16 14 13 18 18 O 1.21585 * 120.00268 * 0.02562 * 17 16 14 19 19 C 1.47580 * 119.99678 * 180.02562 * 17 16 14 20 20 C 1.39761 * 120.07789 * 359.72531 * 19 17 16 21 21 C 1.37663 * 119.92586 * 179.76522 * 20 19 17 22 22 C 1.39139 * 120.07400 * 0.53603 * 21 20 19 23 23 N 1.39431 * 119.92601 * 179.72040 * 22 21 20 24 24 C 1.34776 * 119.99833 * 144.82012 * 23 22 21 25 25 N 1.34778 * 119.99450 * 184.57936 * 24 23 22 26 26 O 1.21572 * 120.00113 * 4.58480 * 24 23 22 27 27 C 1.39135 * 120.14674 * 359.69461 * 22 21 20 28 28 C 1.37661 * 120.07844 * 0.04623 * 27 22 21 29 29 C 1.53778 * 87.08492 * 334.56801 * 14 13 11 30 30 H 0.96998 * 120.00608 * 0.02562 * 1 2 3 31 31 H 0.97004 * 120.00030 * 0.02562 * 9 7 2 32 32 H 1.08999 * 109.47359 * 299.72862 * 10 9 7 33 33 H 1.08998 * 109.47329 * 59.72945 * 10 9 7 34 34 H 1.09000 * 113.61038 * 254.52577 * 13 11 10 35 35 H 1.08998 * 113.61055 * 25.42920 * 13 11 10 36 36 H 0.97003 * 119.99783 * 287.46576 * 16 14 13 37 37 H 1.08000 * 120.03306 * 0.02562 * 20 19 17 38 38 H 1.07993 * 119.96007 * 180.27255 * 21 20 19 39 39 H 0.96998 * 119.99914 * 324.82502 * 23 22 21 40 40 H 0.97001 * 120.00193 * 0.02562 * 25 24 23 41 41 H 0.97000 * 119.99291 * 180.02562 * 25 24 23 42 42 H 1.08006 * 119.96155 * 180.02562 * 27 22 21 43 43 H 1.07999 * 120.04000 * 179.97438 * 28 27 22 44 44 H 1.09006 * 113.61639 * 270.88787 * 29 14 13 45 45 H 1.08997 * 113.62064 * 139.98335 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0466 -1.4000 5 1 1.4474 2.6527 0.7000 6 1 3.5476 1.4404 0.7001 7 6 2.0103 -1.2020 -0.0005 8 1 3.0902 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0583 -3.6567 0.0050 11 6 1.0641 -4.8196 0.0106 12 1 0.2383 -4.6672 0.7054 13 6 0.6167 -5.2544 -1.3950 14 6 0.7050 -6.7039 -0.8890 15 1 1.1233 -7.3966 -1.6194 16 7 -0.5375 -7.1939 -0.2869 17 6 -1.2939 -8.0963 -0.9426 18 8 -0.9450 -8.5042 -2.0335 19 6 -2.5457 -8.5895 -0.3362 20 6 -2.9454 -8.1261 0.9203 21 6 -4.1162 -8.5845 1.4809 22 6 -4.8957 -9.5166 0.8029 23 7 -6.0780 -9.9832 1.3761 24 6 -7.1406 -10.2630 0.5958 25 7 -8.3114 -10.6254 1.1564 26 8 -7.0429 -10.1887 -0.6137 27 6 -4.4983 -9.9836 -0.4460 28 6 -3.3314 -9.5253 -1.0147 29 6 1.7308 -6.1994 0.1395 30 1 -0.4851 0.8400 -0.0004 31 1 0.3557 -2.3881 -0.0005 32 1 2.6847 -3.7184 -0.8849 33 1 2.6852 -3.7103 0.8950 34 1 -0.3963 -4.9409 -1.6472 35 1 1.3403 -5.0196 -2.1756 36 1 -0.8157 -6.8688 0.5836 37 1 -2.3385 -7.4060 1.4490 38 1 -4.4278 -8.2235 2.4498 39 1 -6.1356 -10.1064 2.3365 40 1 -8.3894 -10.6844 2.1215 41 1 -9.0761 -10.8271 0.5947 42 1 -5.1058 -10.7068 -0.9698 43 1 -3.0233 -9.8886 -1.9840 44 1 2.7590 -6.2229 -0.2216 45 1 1.6173 -6.6488 1.1260 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330696419.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:06:54 Heat of formation + Delta-G solvation = -32.825777 kcal Electronic energy + Delta-G solvation = -26845.185902 eV Core-core repulsion = 22862.338876 eV Total energy + Delta-G solvation = -3982.847026 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.83832 -41.28128 -39.90931 -38.85086 -36.33216 -35.88213 -34.79489 -34.38193 -32.82498 -31.94781 -30.61213 -28.42862 -26.60659 -25.61477 -24.85795 -23.93189 -22.87096 -22.50097 -21.60737 -20.31970 -19.53691 -19.13441 -19.02002 -18.78642 -17.28787 -16.93275 -16.72876 -16.49747 -16.22359 -16.07371 -15.77572 -15.56777 -15.50035 -15.16867 -15.08373 -14.80987 -14.47550 -14.36317 -13.76458 -13.72729 -13.58673 -13.35935 -13.09784 -12.90598 -12.68747 -12.34004 -12.16565 -11.91354 -11.72897 -11.64684 -11.34040 -11.30351 -11.13404 -11.01968 -10.83952 -10.74940 -10.08150 -10.02119 -9.19948 -8.95916 -7.93699 -5.21743 -0.25346 0.38207 1.47541 1.49566 1.57843 1.64729 1.73442 2.06926 2.13485 2.57194 2.86071 3.39214 3.46601 3.60239 3.62149 3.73624 3.84390 3.93618 3.97154 3.98472 4.29122 4.35444 4.38455 4.51436 4.59142 4.77996 4.87370 4.91376 4.94334 4.99327 5.01454 5.08440 5.17457 5.18595 5.29387 5.30207 5.39610 5.41854 5.50939 5.69363 5.79183 5.90937 5.93977 6.29218 6.52504 6.91424 7.18323 7.35078 7.49227 8.13667 8.35775 9.29895 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015659 B = 0.001965 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.627766 B =14248.904746 C =15447.366822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.079 4.079 3 Si 0.974 3.026 4 H -0.289 1.289 5 H -0.295 1.295 6 H -0.268 1.268 7 C -0.244 4.244 8 H 0.075 0.925 9 N -0.745 5.745 10 C 0.159 3.841 11 C -0.110 4.110 12 H 0.088 0.912 13 C -0.145 4.145 14 C 0.124 3.876 15 H 0.094 0.906 16 N -0.694 5.694 17 C 0.559 3.441 18 O -0.584 6.584 19 C -0.169 4.169 20 C -0.057 4.057 21 C -0.142 4.142 22 C 0.188 3.812 23 N -0.668 5.668 24 C 0.697 3.303 25 N -0.837 5.837 26 O -0.624 6.624 27 C -0.144 4.144 28 C -0.053 4.053 29 C -0.114 4.114 30 H 0.250 0.750 31 H 0.373 0.627 32 H 0.019 0.981 33 H 0.024 0.976 34 H 0.049 0.951 35 H 0.084 0.916 36 H 0.413 0.587 37 H 0.157 0.843 38 H 0.172 0.828 39 H 0.431 0.569 40 H 0.419 0.581 41 H 0.425 0.575 42 H 0.133 0.867 43 H 0.123 0.877 44 H 0.107 0.893 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.644 -26.535 10.841 31.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.271 4.271 3 Si 0.803 3.197 4 H -0.217 1.217 5 H -0.221 1.221 6 H -0.193 1.193 7 C -0.376 4.376 8 H 0.093 0.907 9 N -0.387 5.387 10 C 0.033 3.967 11 C -0.128 4.128 12 H 0.107 0.893 13 C -0.184 4.184 14 C 0.018 3.982 15 H 0.112 0.888 16 N -0.345 5.345 17 C 0.349 3.651 18 O -0.465 6.465 19 C -0.173 4.173 20 C -0.076 4.076 21 C -0.163 4.163 22 C 0.091 3.909 23 N -0.318 5.318 24 C 0.396 3.604 25 N -0.406 5.406 26 O -0.504 6.504 27 C -0.165 4.165 28 C -0.073 4.073 29 C -0.152 4.152 30 H 0.059 0.941 31 H 0.205 0.795 32 H 0.037 0.963 33 H 0.042 0.958 34 H 0.068 0.932 35 H 0.103 0.897 36 H 0.252 0.748 37 H 0.175 0.825 38 H 0.189 0.811 39 H 0.271 0.729 40 H 0.250 0.750 41 H 0.259 0.741 42 H 0.150 0.850 43 H 0.141 0.859 44 H 0.125 0.875 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -13.081 -26.642 9.171 31.065 hybrid contribution -0.615 1.179 0.418 1.394 sum -13.696 -25.463 9.589 30.461 Atomic orbital electron populations 1.69815 1.06588 1.25992 1.59716 1.25578 0.96440 1.01150 1.03934 0.85135 0.77775 0.79499 0.77336 1.21667 1.22128 1.19282 1.19670 0.91537 0.85551 1.40879 0.90683 1.42583 1.05600 1.01269 1.89279 1.20840 0.93798 0.84528 0.97548 1.22689 0.98591 0.94316 0.97243 0.89335 1.23438 1.01237 0.96076 0.97630 1.21798 0.85049 0.94384 0.96943 0.88830 1.45488 1.23180 1.42962 1.22840 1.18558 0.83878 0.78349 0.84310 1.90744 1.73263 1.60139 1.22393 1.19855 0.96476 1.03206 0.97773 1.21388 0.96114 0.97525 0.92591 1.21137 0.95478 0.96663 1.02977 1.17796 0.86120 0.93513 0.93516 1.42274 1.09744 1.68161 1.11636 1.16225 0.81669 0.77694 0.84850 1.42768 1.11041 1.74017 1.12778 1.90999 1.84305 1.60474 1.14601 1.21208 0.96169 1.02345 0.96729 1.21109 0.92874 0.94182 0.99160 1.23225 0.98832 0.93267 0.99903 0.94078 0.79545 0.96301 0.95811 0.93226 0.89698 0.74834 0.82512 0.81103 0.72943 0.74961 0.74145 0.84967 0.85939 0.87493 0.88615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.03 13.06 21.65 0.28 -59.74 16 2 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 3 Si 0.97 46.59 29.55 68.60 2.03 48.61 16 4 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 5 H -0.29 -14.12 7.11 99.48 0.71 -13.42 16 6 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 7 C -0.24 -13.81 9.99 84.03 0.84 -12.97 16 8 H 0.08 4.07 7.83 -2.91 -0.02 4.04 16 9 N -0.74 -38.05 5.60 -343.46 -1.92 -39.97 16 10 C 0.16 6.19 6.10 86.38 0.53 6.71 16 11 C -0.11 -3.25 3.63 -10.26 -0.04 -3.29 16 12 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 13 C -0.14 -4.42 7.43 31.12 0.23 -4.19 16 14 C 0.12 3.11 4.32 45.52 0.20 3.30 16 15 H 0.09 2.55 7.46 -2.39 -0.02 2.53 16 16 N -0.69 -15.85 5.22 -443.16 -2.31 -18.16 16 17 C 0.56 15.50 7.76 86.71 0.67 16.17 16 18 O -0.58 -20.99 15.94 -3.99 -0.06 -21.05 16 19 C -0.17 -3.88 5.88 -20.08 -0.12 -3.99 16 20 C -0.06 -0.88 9.53 22.50 0.21 -0.66 16 21 C -0.14 -1.71 9.94 22.35 0.22 -1.49 16 22 C 0.19 2.96 6.30 38.36 0.24 3.20 16 23 N -0.67 -6.30 5.32 -317.18 -1.69 -7.99 16 24 C 0.70 9.74 8.67 179.05 1.55 11.30 16 25 N -0.84 -3.21 8.88 -184.76 -1.64 -4.85 16 26 O -0.62 -15.72 14.59 -3.94 -0.06 -15.78 16 27 C -0.14 -3.17 8.66 22.35 0.19 -2.98 16 28 C -0.05 -1.31 9.58 22.50 0.22 -1.10 16 29 C -0.11 -2.45 7.39 31.12 0.23 -2.22 16 30 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 31 H 0.37 20.29 7.67 -92.71 -0.71 19.57 16 32 H 0.02 0.75 7.84 -2.39 -0.02 0.73 16 33 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.08 2.67 7.90 -2.39 -0.02 2.65 16 36 H 0.41 7.03 6.72 -92.71 -0.62 6.41 16 37 H 0.16 1.56 6.39 -2.91 -0.02 1.54 16 38 H 0.17 0.76 8.06 -2.91 -0.02 0.73 16 39 H 0.43 0.19 8.83 -92.71 -0.82 -0.63 16 40 H 0.42 -1.62 8.85 -92.71 -0.82 -2.44 16 41 H 0.42 1.27 8.93 -92.71 -0.83 0.44 16 42 H 0.13 3.26 6.21 -2.91 -0.02 3.24 16 43 H 0.12 3.27 7.64 -2.91 -0.02 3.25 16 44 H 0.11 2.12 8.10 -2.38 -0.02 2.11 16 45 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -85.41 379.48 -2.43 -87.84 By element: Atomic # 1 Polarization: 30.14 SS G_CDS: -2.71 Total: 27.43 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: 5.65 Total: 3.66 kcal Atomic # 7 Polarization: -123.43 SS G_CDS: -7.28 Total: -130.71 kcal Atomic # 8 Polarization: -36.71 SS G_CDS: -0.12 Total: -36.83 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.61 kcal Total: -85.41 -2.43 -87.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330696419.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.016 kcal (2) G-P(sol) polarization free energy of solvation -85.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds