Wall clock time and date at job start Sat Apr 11 2020 03:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 120.00197 * 2 1 4 4 H 1.48496 * 109.47578 * 269.99854 * 3 2 1 5 5 H 1.48503 * 109.46983 * 29.99704 * 3 2 1 6 6 H 1.48504 * 109.47405 * 149.99655 * 3 2 1 7 7 C 1.38810 * 120.00210 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00405 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99955 * 0.02562 * 7 2 1 10 10 C 1.46504 * 120.00326 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47213 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.46973 * 180.02562 * 11 10 9 13 13 O 1.42900 * 109.46938 * 179.97438 * 12 11 10 14 14 C 1.42899 * 113.99658 * 179.97438 * 13 12 11 15 15 C 1.53005 * 109.46893 * 180.02562 * 14 13 12 16 16 N 1.46500 * 109.46997 * 65.00124 * 15 14 13 17 17 C 1.34781 * 120.00003 * 179.97438 * 16 15 14 18 18 O 1.21640 * 119.99981 * 0.02562 * 17 16 15 19 19 C 1.47170 * 119.99656 * 180.02562 * 17 16 15 20 20 C 1.38587 * 120.72923 * 359.97438 * 19 17 16 21 21 C 1.38924 * 121.36005 * 179.97438 * 20 19 17 22 22 C 1.35824 * 122.60075 * 359.97438 * 21 20 19 23 23 C 1.40838 * 120.55388 * 0.02562 * 22 21 20 24 24 C 1.38425 * 134.89278 * 179.97438 * 23 22 21 25 25 N 1.33895 * 107.84302 * 180.02562 * 24 23 22 26 26 H 0.97005 * 125.01700 * 179.97438 * 25 24 23 27 27 N 1.39980 * 109.95967 * 0.02562 * 25 24 23 28 28 C 1.31478 * 109.01709 * 359.97438 * 27 25 24 29 29 H 0.96996 * 120.00038 * 0.02562 * 1 2 3 30 30 H 0.97005 * 119.99657 * 0.02562 * 9 7 2 31 31 H 1.09000 * 109.46611 * 60.00174 * 10 9 7 32 32 H 1.09002 * 109.46887 * 300.00068 * 10 9 7 33 33 H 1.08997 * 109.46916 * 59.99852 * 11 10 9 34 34 H 1.09002 * 109.46980 * 299.99681 * 11 10 9 35 35 H 1.09001 * 109.47415 * 59.99563 * 12 11 10 36 36 H 1.08997 * 109.47130 * 299.99855 * 12 11 10 37 37 H 1.08998 * 109.47075 * 60.00208 * 14 13 12 38 38 H 1.09000 * 109.47501 * 300.00059 * 14 13 12 39 39 H 1.08992 * 109.47371 * 305.00386 * 15 14 13 40 40 H 1.09001 * 109.47293 * 185.00136 * 15 14 13 41 41 H 0.97003 * 120.00173 * 0.02562 * 16 15 14 42 42 H 1.08001 * 119.31520 * 359.95570 * 20 19 17 43 43 H 1.08006 * 118.70052 * 180.02562 * 21 20 19 44 44 H 1.08006 * 119.72318 * 180.02562 * 22 21 20 45 45 H 1.08001 * 126.08076 * 359.76264 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0638 -4.8198 -0.0001 12 6 1.8288 -6.1448 0.0005 13 8 0.9002 -7.2309 0.0005 14 6 1.5148 -8.5210 0.0005 15 6 0.4318 -9.6018 -0.0001 16 7 -0.3256 -9.5333 -1.2522 17 6 -1.3367 -10.3960 -1.4763 18 8 -1.6205 -11.2311 -0.6386 19 6 -2.0972 -10.3275 -2.7344 20 6 -1.7870 -9.3818 -3.6988 21 6 -2.4958 -9.3058 -4.8912 22 6 -3.5246 -10.1423 -5.1855 23 6 -3.9202 -11.1394 -4.2729 24 6 -4.8948 -12.1223 -4.2616 25 7 -4.7954 -12.7854 -3.1026 26 1 -5.3609 -13.5268 -2.8351 27 7 -3.7556 -12.2499 -2.3335 28 6 -3.1999 -11.2588 -2.9950 29 1 -0.4850 0.8400 -0.0004 30 1 0.3556 -2.3880 -0.0002 31 1 2.6847 -3.7145 0.8906 32 1 2.6847 -3.7146 -0.8895 33 1 0.4375 -4.7618 -0.8903 34 1 0.4369 -4.7622 0.8897 35 1 2.4549 -6.2024 0.8909 36 1 2.4561 -6.2026 -0.8890 37 1 2.1349 -8.6280 0.8905 38 1 2.1350 -8.6280 -0.8894 39 1 -0.2421 -9.4414 0.8413 40 1 0.8978 -10.5831 0.0895 41 1 -0.0991 -8.8676 -1.9204 42 1 -0.9777 -8.6895 -3.5195 43 1 -2.2173 -8.5522 -5.6130 44 1 -4.0436 -10.0420 -6.1274 45 1 -5.6112 -12.3168 -5.0461 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331238130.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:06:57 Heat of formation + Delta-G solvation = 23.320934 kcal Electronic energy + Delta-G solvation = -26402.292321 eV Core-core repulsion = 22421.879999 eV Total energy + Delta-G solvation = -3980.412322 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.59556 -39.71568 -38.14169 -37.15268 -35.39183 -34.62885 -32.53883 -32.26895 -31.32710 -30.15355 -29.43444 -28.50890 -25.18346 -24.95404 -23.27300 -22.50744 -22.24267 -21.72727 -20.81783 -20.21341 -18.53523 -17.73252 -17.16300 -16.98926 -16.77418 -16.49529 -15.73464 -15.47434 -15.41074 -14.92374 -14.60618 -14.47258 -14.30704 -14.09132 -13.80739 -13.35619 -13.25876 -12.99535 -12.87991 -12.45603 -12.18942 -12.11406 -12.05027 -11.60976 -11.29087 -10.90222 -10.87074 -10.73801 -10.68044 -10.61420 -10.58212 -10.04596 -9.91857 -9.69990 -9.59648 -9.28148 -9.15518 -8.86264 -8.01182 -6.91338 -5.74841 -3.04082 -0.04063 1.41936 1.87293 2.28090 2.82103 3.00349 3.44776 3.48874 3.51523 3.57259 3.63983 3.85150 4.10831 4.53017 4.61283 4.63105 4.74754 4.80847 4.92168 4.95228 5.01598 5.17737 5.23692 5.28303 5.35429 5.44739 5.53890 5.58299 5.61320 5.73314 5.88246 5.98326 5.99328 6.09747 6.14179 6.27751 6.28885 6.37735 6.41194 6.64410 6.83533 6.87775 7.19683 7.23837 7.40674 7.70838 8.16747 8.43932 9.54818 10.12910 10.47607 11.48094 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015319 B = 0.001786 C = 0.001651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.407725 B =15671.736742 C =16951.804348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.909 3.091 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.733 5.733 10 C 0.157 3.843 11 C -0.125 4.125 12 C 0.068 3.932 13 O -0.386 6.386 14 C 0.048 3.952 15 C 0.125 3.875 16 N -0.723 5.723 17 C 0.558 3.442 18 O -0.527 6.527 19 C -0.122 4.122 20 C -0.023 4.023 21 C -0.170 4.170 22 C -0.009 4.009 23 C -0.221 4.221 24 C 0.092 3.908 25 N -0.430 5.430 26 H 0.445 0.555 27 N -0.271 5.271 28 C 0.138 3.862 29 H 0.255 0.745 30 H 0.385 0.615 31 H 0.019 0.981 32 H 0.019 0.981 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.049 0.951 36 H 0.049 0.951 37 H 0.066 0.934 38 H 0.055 0.945 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.403 0.597 42 H 0.134 0.866 43 H 0.131 0.869 44 H 0.128 0.872 45 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.834 -28.803 -12.150 31.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.211 4.211 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.377 5.377 10 C 0.029 3.971 11 C -0.163 4.163 12 C -0.009 4.009 13 O -0.306 6.306 14 C -0.029 4.029 15 C 0.002 3.998 16 N -0.376 5.376 17 C 0.346 3.654 18 O -0.404 6.404 19 C -0.128 4.128 20 C -0.046 4.046 21 C -0.190 4.190 22 C -0.029 4.029 23 C -0.232 4.232 24 C -0.066 4.066 25 N -0.130 5.130 26 H 0.289 0.711 27 N -0.097 5.097 28 C -0.021 4.021 29 H 0.065 0.935 30 H 0.218 0.782 31 H 0.037 0.963 32 H 0.037 0.963 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.096 0.904 40 H 0.100 0.900 41 H 0.238 0.762 42 H 0.152 0.848 43 H 0.149 0.851 44 H 0.146 0.854 45 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -7.054 -29.974 -10.361 32.489 hybrid contribution 0.164 1.354 -0.969 1.673 sum -6.890 -28.620 -11.329 31.542 Atomic orbital electron populations 1.69666 1.05124 1.25683 1.57673 1.24766 0.95559 0.97757 1.03014 0.86164 0.78618 0.83744 0.77501 1.21706 1.21746 1.20759 1.19238 0.91052 0.84139 1.42786 0.91137 1.42343 1.05970 0.99907 1.89520 1.20515 0.93310 0.85480 0.97824 1.21669 0.99408 0.91808 1.03370 1.22506 0.91825 0.86492 1.00072 1.87939 1.33879 1.13304 1.95457 1.22725 0.95008 0.83810 1.01357 1.21379 0.93654 0.97581 0.87220 1.45803 1.34573 1.36311 1.20929 1.17921 0.79853 0.81225 0.86386 1.90834 1.67081 1.36380 1.46107 1.19808 0.97911 0.98868 0.96219 1.21314 0.97041 0.94155 0.92104 1.20385 0.98447 1.02064 0.98092 1.20331 0.94515 0.91176 0.96920 1.19607 1.02017 1.03256 0.98280 1.22800 0.99164 0.93562 0.91027 1.46588 1.26397 1.27350 1.12671 0.71070 1.77866 1.02443 1.14111 1.15284 1.21486 0.94887 0.93714 0.91994 0.93476 0.78169 0.96332 0.96340 0.91162 0.91159 0.93256 0.93281 0.91561 0.92666 0.90397 0.90018 0.76164 0.84808 0.85090 0.85406 0.79224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.66 13.06 55.49 0.72 -27.93 16 2 C -0.01 -0.44 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 22.57 29.55 -169.99 -5.02 17.54 16 4 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.52 16 9 N -0.73 -19.07 5.60 -59.90 -0.34 -19.41 16 10 C 0.16 3.17 6.26 -4.04 -0.03 3.14 16 11 C -0.12 -2.08 5.70 -26.73 -0.15 -2.23 16 12 C 0.07 0.88 5.94 37.16 0.22 1.11 16 13 O -0.39 -4.95 10.29 -35.23 -0.36 -5.31 16 14 C 0.05 0.45 6.07 37.16 0.23 0.68 16 15 C 0.13 1.29 6.06 -4.04 -0.02 1.27 16 16 N -0.72 -7.85 5.45 -61.46 -0.34 -8.19 16 17 C 0.56 7.61 7.77 -12.63 -0.10 7.51 16 18 O -0.53 -9.14 16.32 5.24 0.09 -9.05 16 19 C -0.12 -1.46 6.05 -102.74 -0.62 -2.08 16 20 C -0.02 -0.21 9.50 -39.20 -0.37 -0.58 16 21 C -0.17 -1.24 9.83 -40.19 -0.39 -1.63 16 22 C -0.01 -0.06 10.02 -39.46 -0.40 -0.46 16 23 C -0.22 -1.94 6.34 -105.21 -0.67 -2.60 16 24 C 0.09 0.51 12.08 -16.58 -0.20 0.31 16 25 N -0.43 -3.08 7.18 30.86 0.22 -2.85 16 26 H 0.44 1.43 8.96 -182.68 -1.64 -0.20 16 27 N -0.27 -3.50 12.24 34.35 0.42 -3.08 16 28 C 0.14 1.72 7.27 -80.99 -0.59 1.13 16 29 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 30 H 0.38 10.52 7.67 -40.82 -0.31 10.21 16 31 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 34 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.40 3.56 6.52 -40.82 -0.27 3.30 16 42 H 0.13 0.87 6.38 -52.49 -0.33 0.53 16 43 H 0.13 0.65 8.06 -52.48 -0.42 0.23 16 44 H 0.13 0.47 8.06 -52.48 -0.42 0.05 16 45 H 0.19 0.09 8.06 -52.49 -0.42 -0.33 16 LS Contribution 386.66 15.07 5.83 5.83 Total: -1.00 -39.40 386.66 -9.71 -49.12 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -7.59 Total: 5.33 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: -3.34 Total: -2.00 kcal Atomic # 7 Polarization: -62.16 SS G_CDS: 0.70 Total: -61.46 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: -0.28 Total: -14.36 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -39.40 -9.71 -49.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331238130.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.436 kcal (2) G-P(sol) polarization free energy of solvation -39.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds