Wall clock time and date at job start Sat Apr 11 2020 03:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 120.00197 * 2 1 4 4 H 1.48496 * 109.47578 * 269.99854 * 3 2 1 5 5 H 1.48503 * 109.46983 * 29.99704 * 3 2 1 6 6 H 1.48504 * 109.47405 * 149.99655 * 3 2 1 7 7 C 1.38810 * 120.00210 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00405 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99955 * 0.02562 * 7 2 1 10 10 C 1.46504 * 120.00326 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47213 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.46973 * 180.02562 * 11 10 9 13 13 O 1.42900 * 109.46938 * 179.97438 * 12 11 10 14 14 C 1.42899 * 113.99658 * 179.97438 * 13 12 11 15 15 C 1.53005 * 109.46893 * 180.02562 * 14 13 12 16 16 N 1.46500 * 109.46997 * 65.00124 * 15 14 13 17 17 C 1.34781 * 120.00003 * 179.97438 * 16 15 14 18 18 O 1.21640 * 119.99981 * 0.02562 * 17 16 15 19 19 C 1.47170 * 119.99656 * 180.02562 * 17 16 15 20 20 C 1.38587 * 120.72923 * 359.97438 * 19 17 16 21 21 C 1.38924 * 121.36005 * 179.97438 * 20 19 17 22 22 C 1.35824 * 122.60075 * 359.97438 * 21 20 19 23 23 C 1.40838 * 120.55388 * 0.02562 * 22 21 20 24 24 C 1.38425 * 134.89278 * 179.97438 * 23 22 21 25 25 N 1.33895 * 107.84302 * 180.02562 * 24 23 22 26 26 H 0.97005 * 125.01700 * 179.97438 * 25 24 23 27 27 N 1.39980 * 109.95967 * 0.02562 * 25 24 23 28 28 C 1.31478 * 109.01709 * 359.97438 * 27 25 24 29 29 H 0.96996 * 120.00038 * 0.02562 * 1 2 3 30 30 H 0.97005 * 119.99657 * 0.02562 * 9 7 2 31 31 H 1.09000 * 109.46611 * 60.00174 * 10 9 7 32 32 H 1.09002 * 109.46887 * 300.00068 * 10 9 7 33 33 H 1.08997 * 109.46916 * 59.99852 * 11 10 9 34 34 H 1.09002 * 109.46980 * 299.99681 * 11 10 9 35 35 H 1.09001 * 109.47415 * 59.99563 * 12 11 10 36 36 H 1.08997 * 109.47130 * 299.99855 * 12 11 10 37 37 H 1.08998 * 109.47075 * 60.00208 * 14 13 12 38 38 H 1.09000 * 109.47501 * 300.00059 * 14 13 12 39 39 H 1.08992 * 109.47371 * 305.00386 * 15 14 13 40 40 H 1.09001 * 109.47293 * 185.00136 * 15 14 13 41 41 H 0.97003 * 120.00173 * 0.02562 * 16 15 14 42 42 H 1.08001 * 119.31520 * 359.95570 * 20 19 17 43 43 H 1.08006 * 118.70052 * 180.02562 * 21 20 19 44 44 H 1.08006 * 119.72318 * 180.02562 * 22 21 20 45 45 H 1.08001 * 126.08076 * 359.76264 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0638 -4.8198 -0.0001 12 6 1.8288 -6.1448 0.0005 13 8 0.9002 -7.2309 0.0005 14 6 1.5148 -8.5210 0.0005 15 6 0.4318 -9.6018 -0.0001 16 7 -0.3256 -9.5333 -1.2522 17 6 -1.3367 -10.3960 -1.4763 18 8 -1.6205 -11.2311 -0.6386 19 6 -2.0972 -10.3275 -2.7344 20 6 -1.7870 -9.3818 -3.6988 21 6 -2.4958 -9.3058 -4.8912 22 6 -3.5246 -10.1423 -5.1855 23 6 -3.9202 -11.1394 -4.2729 24 6 -4.8948 -12.1223 -4.2616 25 7 -4.7954 -12.7854 -3.1026 26 1 -5.3609 -13.5268 -2.8351 27 7 -3.7556 -12.2499 -2.3335 28 6 -3.1999 -11.2588 -2.9950 29 1 -0.4850 0.8400 -0.0004 30 1 0.3556 -2.3880 -0.0002 31 1 2.6847 -3.7145 0.8906 32 1 2.6847 -3.7146 -0.8895 33 1 0.4375 -4.7618 -0.8903 34 1 0.4369 -4.7622 0.8897 35 1 2.4549 -6.2024 0.8909 36 1 2.4561 -6.2026 -0.8890 37 1 2.1349 -8.6280 0.8905 38 1 2.1350 -8.6280 -0.8894 39 1 -0.2421 -9.4414 0.8413 40 1 0.8978 -10.5831 0.0895 41 1 -0.0991 -8.8676 -1.9204 42 1 -0.9777 -8.6895 -3.5195 43 1 -2.2173 -8.5522 -5.6130 44 1 -4.0436 -10.0420 -6.1274 45 1 -5.6112 -12.3168 -5.0461 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331238130.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:06:56 Heat of formation + Delta-G solvation = -7.498925 kcal Electronic energy + Delta-G solvation = -26403.628770 eV Core-core repulsion = 22421.879999 eV Total energy + Delta-G solvation = -3981.748771 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.20328 -40.63110 -39.12339 -37.79039 -37.02100 -35.78178 -34.11469 -33.11835 -32.11921 -31.52663 -30.39361 -29.35801 -26.78645 -25.70718 -24.33072 -23.97535 -22.86614 -22.56146 -22.24742 -20.96432 -19.16813 -19.08330 -18.42651 -17.88224 -17.67610 -17.37193 -16.75155 -16.59655 -16.21578 -16.07552 -15.69471 -15.48438 -15.34866 -15.17796 -15.01421 -14.86694 -14.52534 -14.05045 -13.88376 -13.30452 -13.13688 -13.04180 -12.78399 -12.74275 -12.68071 -12.53835 -12.38023 -12.06013 -12.00497 -11.90920 -11.73419 -11.57091 -11.28126 -10.93278 -10.84696 -10.51879 -10.16150 -9.85138 -9.01265 -8.64368 -7.94927 -5.25017 -0.63174 0.85032 1.16553 1.48610 1.51094 1.59599 1.82136 2.03660 2.19398 2.51754 2.67508 2.91749 3.28713 3.38715 3.58489 3.84212 3.94327 4.06446 4.11155 4.16294 4.21734 4.24118 4.38716 4.44122 4.44959 4.49758 4.53488 4.63441 4.68524 4.75703 4.78027 4.83494 4.88152 4.98017 5.28810 5.34655 5.35885 5.41169 5.42176 5.50024 5.56888 5.89290 6.24883 6.27094 6.29193 6.53271 6.63957 7.25444 7.32827 8.08647 8.31322 9.28958 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015319 B = 0.001786 C = 0.001651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.407725 B =15671.736742 C =16951.804348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.079 4.079 3 Si 0.979 3.021 4 H -0.284 1.284 5 H -0.296 1.296 6 H -0.268 1.268 7 C -0.249 4.249 8 H 0.080 0.920 9 N -0.750 5.750 10 C 0.155 3.845 11 C -0.114 4.114 12 C 0.077 3.923 13 O -0.407 6.407 14 C 0.052 3.948 15 C 0.124 3.876 16 N -0.713 5.713 17 C 0.553 3.447 18 O -0.581 6.581 19 C -0.179 4.179 20 C -0.002 4.002 21 C -0.196 4.196 22 C 0.015 3.985 23 C -0.254 4.254 24 C 0.134 3.866 25 N -0.424 5.424 26 H 0.459 0.541 27 N -0.345 5.345 28 C 0.110 3.890 29 H 0.252 0.748 30 H 0.373 0.627 31 H 0.024 0.976 32 H 0.030 0.970 33 H 0.062 0.938 34 H 0.053 0.947 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.054 0.946 40 H 0.090 0.910 41 H 0.412 0.588 42 H 0.150 0.850 43 H 0.158 0.842 44 H 0.170 0.830 45 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.369 -28.960 -14.892 33.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.271 4.271 3 Si 0.807 3.193 4 H -0.211 1.211 5 H -0.222 1.222 6 H -0.193 1.193 7 C -0.380 4.380 8 H 0.097 0.903 9 N -0.393 5.393 10 C 0.028 3.972 11 C -0.152 4.152 12 C 0.001 3.999 13 O -0.327 6.327 14 C -0.024 4.024 15 C 0.001 3.999 16 N -0.367 5.367 17 C 0.343 3.657 18 O -0.462 6.462 19 C -0.185 4.185 20 C -0.024 4.024 21 C -0.215 4.215 22 C -0.005 4.005 23 C -0.264 4.264 24 C -0.025 4.025 25 N -0.125 5.125 26 H 0.306 0.694 27 N -0.172 5.172 28 C -0.048 4.048 29 H 0.061 0.939 30 H 0.204 0.796 31 H 0.042 0.958 32 H 0.048 0.952 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.102 0.898 38 H 0.098 0.902 39 H 0.073 0.927 40 H 0.108 0.892 41 H 0.250 0.750 42 H 0.168 0.832 43 H 0.176 0.824 44 H 0.187 0.813 45 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -6.530 -30.154 -13.103 33.520 hybrid contribution -0.089 1.281 -0.245 1.307 sum -6.620 -28.873 -13.348 32.491 Atomic orbital electron populations 1.69833 1.06768 1.26194 1.59413 1.25663 0.96477 1.01419 1.03584 0.85066 0.77646 0.79038 0.77550 1.21133 1.22248 1.19252 1.19691 0.91678 0.85271 1.41400 0.90259 1.42615 1.05727 1.01403 1.89556 1.20679 0.93827 0.84409 0.98238 1.21483 0.98622 0.92880 1.02247 1.22328 0.91192 0.84742 1.01678 1.87896 1.34697 1.14415 1.95732 1.22845 0.94556 0.81643 1.03373 1.21406 0.93556 0.98624 0.86328 1.45763 1.33883 1.35840 1.21183 1.18372 0.79983 0.80656 0.86705 1.90778 1.68799 1.38685 1.47964 1.19832 1.00002 1.01868 0.96842 1.21619 0.96612 0.92483 0.91714 1.20742 0.99102 1.03536 0.98122 1.20851 0.93244 0.88928 0.97459 1.20127 1.03197 1.05403 0.97680 1.23770 0.97647 0.90475 0.90599 1.46622 1.25429 1.27583 1.12834 0.69369 1.77751 1.05291 1.16165 1.17966 1.21887 0.95384 0.93720 0.93761 0.93945 0.79559 0.95763 0.95204 0.91881 0.92770 0.92082 0.91185 0.89780 0.90236 0.92712 0.89172 0.75013 0.83211 0.82391 0.81289 0.73299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.52 13.06 21.65 0.28 -60.24 16 2 C -0.08 -4.63 5.50 84.86 0.47 -4.16 16 3 Si 0.98 46.29 29.55 68.60 2.03 48.32 16 4 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 5 H -0.30 -14.10 7.11 99.48 0.71 -13.40 16 6 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 7 C -0.25 -14.10 9.99 84.03 0.84 -13.26 16 8 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 9 N -0.75 -39.14 5.60 -343.44 -1.92 -41.07 16 10 C 0.15 6.11 6.26 86.38 0.54 6.65 16 11 C -0.11 -3.74 5.70 30.59 0.17 -3.56 16 12 C 0.08 1.86 5.94 71.98 0.43 2.29 16 13 O -0.41 -9.94 10.29 -148.98 -1.53 -11.47 16 14 C 0.05 0.90 6.07 71.98 0.44 1.34 16 15 C 0.12 2.65 6.06 86.38 0.52 3.17 16 16 N -0.71 -16.24 5.45 -466.60 -2.55 -18.79 16 17 C 0.55 16.44 7.77 86.59 0.67 17.12 16 18 O -0.58 -22.32 16.32 -4.16 -0.07 -22.38 16 19 C -0.18 -4.57 6.05 -18.65 -0.11 -4.69 16 20 C 0.00 -0.03 9.50 22.52 0.21 0.18 16 21 C -0.20 -2.43 9.83 21.87 0.21 -2.21 16 22 C 0.02 0.16 10.02 22.35 0.22 0.39 16 23 C -0.25 -4.00 6.34 -20.25 -0.13 -4.13 16 24 C 0.13 1.07 12.08 84.42 1.02 2.09 16 25 N -0.42 -5.76 7.18 -56.28 -0.40 -6.17 16 26 H 0.46 2.59 8.96 -213.39 -1.91 0.68 16 27 N -0.35 -9.50 12.24 -45.23 -0.55 -10.06 16 28 C 0.11 2.88 7.27 43.75 0.32 3.20 16 29 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 30 H 0.37 20.84 7.67 -92.70 -0.71 20.12 16 31 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.08 1.02 8.14 -2.39 -0.02 1.01 16 39 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.41 7.32 6.52 -92.71 -0.60 6.72 16 42 H 0.15 1.84 6.38 -2.91 -0.02 1.82 16 43 H 0.16 1.04 8.06 -2.91 -0.02 1.02 16 44 H 0.17 0.35 8.06 -2.91 -0.02 0.32 16 45 H 0.25 -1.27 8.06 -2.91 -0.02 -1.30 16 Total: -1.00 -91.30 386.66 -1.07 -92.37 By element: Atomic # 1 Polarization: 27.26 SS G_CDS: -2.18 Total: 25.07 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: 5.83 Total: 4.41 kcal Atomic # 7 Polarization: -131.18 SS G_CDS: -5.14 Total: -136.32 kcal Atomic # 8 Polarization: -32.26 SS G_CDS: -1.60 Total: -33.86 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Total: -91.30 -1.07 -92.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331238130.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.873 kcal (2) G-P(sol) polarization free energy of solvation -91.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds