Wall clock time and date at job start Sat Apr 11 2020 03:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30885 * 1 3 3 Si 1.86800 * 120.00114 * 2 1 4 4 H 1.48502 * 109.47092 * 274.65576 * 3 2 1 5 5 H 1.48501 * 109.47092 * 34.65371 * 3 2 1 6 6 H 1.48497 * 109.47284 * 154.65639 * 3 2 1 7 7 C 1.39886 * 119.99755 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99726 * 162.15528 * 7 2 1 9 9 C 1.41223 * 120.00282 * 342.15824 * 7 2 1 10 10 C 1.40829 * 120.18048 * 155.13982 * 9 7 2 11 11 C 1.36438 * 119.81200 * 180.02562 * 10 9 7 12 12 C 1.39305 * 120.18360 * 0.27972 * 11 10 9 13 13 O 1.35678 * 119.81904 * 179.71525 * 12 11 10 14 14 C 1.42895 * 116.99997 * 180.02562 * 13 12 11 15 15 C 1.53002 * 109.46981 * 180.02562 * 14 13 12 16 16 H 1.08998 * 109.47058 * 304.99921 * 15 14 13 17 17 O 1.42900 * 109.47081 * 65.00193 * 15 14 13 18 18 C 1.52998 * 109.47025 * 185.00144 * 15 14 13 19 19 N 1.46904 * 109.47017 * 180.02562 * 18 15 14 20 20 C 1.46901 * 111.00299 * 179.97438 * 19 18 15 21 21 C 1.52990 * 109.47408 * 179.97438 * 20 19 18 22 22 N 1.46499 * 109.47497 * 180.02562 * 21 20 19 23 23 C 1.35494 * 126.98078 * 269.69195 * 22 21 20 24 24 N 1.30517 * 107.31209 * 179.83345 * 23 22 21 25 25 N 1.28597 * 109.66726 * 0.43339 * 24 23 22 26 26 C 1.30517 * 109.67965 * 359.72378 * 25 24 23 27 27 C 1.39321 * 120.36585 * 359.44330 * 12 11 10 28 28 C 1.36442 * 120.18148 * 0.55238 * 27 12 11 29 29 H 0.96996 * 120.00147 * 0.02562 * 1 2 3 30 30 H 1.08003 * 120.09080 * 0.02562 * 10 9 7 31 31 H 1.07998 * 119.90878 * 179.97438 * 11 10 9 32 32 H 1.08999 * 109.47273 * 300.00291 * 14 13 12 33 33 H 1.08996 * 109.47624 * 60.00710 * 14 13 12 34 34 H 0.96699 * 114.00658 * 59.99947 * 17 15 14 35 35 H 1.09007 * 109.47393 * 299.99381 * 18 15 14 36 36 H 1.08998 * 109.47360 * 59.99946 * 18 15 14 37 37 H 1.00900 * 111.00132 * 303.95219 * 19 18 15 38 38 H 1.08996 * 109.47104 * 300.00356 * 20 19 18 39 39 H 1.09003 * 109.46771 * 59.99941 * 20 19 18 40 40 H 1.09005 * 109.47295 * 300.00134 * 21 20 19 41 41 H 1.09003 * 109.47095 * 60.00271 * 21 20 19 42 42 H 1.08007 * 126.34660 * 359.97095 * 23 22 21 43 43 H 1.07992 * 126.35546 * 179.97438 * 26 25 24 44 44 H 1.07998 * 119.90672 * 180.27488 * 27 12 11 45 45 H 1.07994 * 120.08996 * 179.70434 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.3920 2.1032 -1.3955 5 1 1.4930 2.6223 0.7961 6 1 3.5862 1.4138 0.5993 7 6 2.0082 -1.2115 0.0005 8 1 3.0493 -1.2341 -0.2861 9 6 1.3531 -2.4049 0.3758 10 6 1.8224 -3.6475 -0.0922 11 6 1.1834 -4.7958 0.2746 12 6 0.0662 -4.7410 1.1049 13 8 -0.5671 -5.8871 1.4604 14 6 -1.7065 -5.7609 2.3134 15 6 -2.2823 -7.1484 2.6038 16 1 -2.4973 -7.6566 1.6638 17 8 -1.3330 -7.9112 3.3515 18 6 -3.5729 -7.0058 3.4131 19 7 -4.1254 -8.3380 3.6924 20 6 -5.3677 -8.2402 4.4703 21 6 -5.9122 -9.6442 4.7404 22 7 -7.1514 -9.5468 5.5157 23 6 -7.2703 -9.5431 6.8654 24 7 -8.5412 -9.4372 7.1430 25 7 -9.2197 -9.3840 6.0519 26 6 -8.4120 -9.4476 5.0286 27 6 -0.4012 -3.5164 1.5769 28 6 0.2265 -2.3588 1.2196 29 1 -0.4850 0.8400 -0.0004 30 1 2.6857 -3.6913 -0.7397 31 1 1.5417 -5.7495 -0.0837 32 1 -1.4091 -5.2882 3.2494 33 1 -2.4627 -5.1491 1.8216 34 1 -1.0944 -7.5176 4.2019 35 1 -3.3580 -6.4977 4.3533 36 1 -4.2970 -6.4240 2.8429 37 1 -4.2730 -8.8546 2.8384 38 1 -5.1650 -7.7404 5.4174 39 1 -6.1046 -7.6672 3.9075 40 1 -6.1151 -10.1438 3.7930 41 1 -5.1755 -10.2177 5.3030 42 1 -6.4629 -9.6125 7.5793 43 1 -8.6956 -9.4258 3.9868 44 1 -1.2653 -3.4829 2.2238 45 1 -0.1399 -1.4099 1.5825 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336826116.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:06:59 Heat of formation + Delta-G solvation = 16.869928 kcal Electronic energy + Delta-G solvation = -26317.527015 eV Core-core repulsion = 22336.834956 eV Total energy + Delta-G solvation = -3980.692058 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.51094 -39.22283 -38.13999 -36.90899 -36.06070 -34.73566 -33.39414 -31.17417 -30.99001 -29.72849 -29.44888 -28.51895 -25.57895 -24.58237 -23.43230 -22.73125 -22.37944 -21.96782 -20.97704 -20.42076 -18.06231 -17.43265 -17.31770 -16.94146 -16.47498 -16.39016 -15.88865 -15.60900 -15.33963 -15.13188 -14.99350 -14.36975 -14.29851 -14.11688 -13.97318 -13.43599 -13.21286 -12.79006 -12.58121 -12.46393 -12.07269 -12.05041 -11.90986 -11.81332 -11.50688 -11.17230 -11.09971 -10.94968 -10.80299 -10.73135 -10.63811 -10.11396 -9.95655 -9.85847 -9.85067 -9.42963 -9.08497 -9.06019 -7.72077 -7.07491 -6.78723 -4.30880 1.36455 1.92684 2.50650 2.71231 2.90373 3.04366 3.08294 3.16749 3.31159 3.87434 3.90606 3.99808 4.11224 4.14444 4.24215 4.36712 4.55699 4.56036 4.70559 4.73710 4.84294 4.88015 5.06427 5.08110 5.15467 5.28847 5.36330 5.54908 5.61068 5.68280 5.87888 6.02703 6.21182 6.22075 6.36815 6.64436 6.69656 6.83055 7.01033 7.21945 7.34346 7.49755 7.61752 7.83680 7.94436 8.09180 8.29662 8.37830 8.58802 8.84604 8.93013 10.16254 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.021818 B = 0.001595 C = 0.001512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.017023 B =17552.118031 C =18511.630375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.075 3.925 3 Si 0.906 3.094 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.463 4.463 8 H 0.077 0.923 9 C 0.087 3.913 10 C -0.196 4.196 11 C -0.111 4.111 12 C -0.012 4.012 13 O -0.318 6.318 14 C 0.038 3.962 15 C 0.116 3.884 16 H 0.104 0.896 17 O -0.540 6.540 18 C 0.031 3.969 19 N -0.674 5.674 20 C 0.043 3.957 21 C 0.107 3.893 22 N -0.475 5.475 23 C 0.155 3.845 24 N -0.300 5.300 25 N -0.300 5.300 26 C 0.151 3.849 27 C -0.174 4.174 28 C -0.134 4.134 29 H 0.279 0.721 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.372 0.628 35 H 0.081 0.919 36 H 0.046 0.954 37 H 0.347 0.653 38 H 0.082 0.918 39 H 0.039 0.961 40 H 0.099 0.901 41 H 0.111 0.889 42 H 0.219 0.781 43 H 0.217 0.783 44 H 0.092 0.908 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.791 -14.785 8.025 19.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.142 4.142 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.493 4.493 8 H 0.096 0.904 9 C 0.085 3.915 10 C -0.216 4.216 11 C -0.130 4.130 12 C -0.055 4.055 13 O -0.233 6.233 14 C -0.039 4.039 15 C 0.055 3.945 16 H 0.122 0.878 17 O -0.344 6.344 18 C -0.099 4.099 19 N -0.306 5.306 20 C -0.087 4.087 21 C -0.016 4.016 22 N -0.166 5.166 23 C -0.133 4.133 24 N -0.140 5.140 25 N -0.139 5.139 26 C -0.137 4.137 27 C -0.193 4.193 28 C -0.154 4.154 29 H 0.090 0.910 30 H 0.118 0.882 31 H 0.115 0.885 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.219 0.781 35 H 0.100 0.900 36 H 0.064 0.936 37 H 0.165 0.835 38 H 0.101 0.899 39 H 0.058 0.942 40 H 0.117 0.883 41 H 0.129 0.871 42 H 0.235 0.765 43 H 0.233 0.767 44 H 0.110 0.890 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.866 -15.196 8.787 21.188 hybrid contribution 0.765 1.792 -1.024 2.201 sum -11.101 -13.405 7.763 19.057 Atomic orbital electron populations 1.69838 1.07556 1.29075 1.36206 1.25880 0.94710 1.01264 0.92321 0.86330 0.80766 0.80774 0.79040 1.19606 1.20122 1.18440 1.19479 0.98112 0.91214 1.40447 0.90444 1.17605 0.91816 0.92208 0.89856 1.20613 1.03264 0.92228 1.05457 1.19615 0.95443 0.97701 1.00212 1.18583 0.97748 0.83796 1.05398 1.85855 1.41746 1.30733 1.65014 1.23079 0.89266 0.96812 0.94750 1.21821 0.86577 0.91186 0.94873 0.87817 1.86623 1.62146 1.50491 1.35161 1.22594 0.96616 0.89825 1.00823 1.60212 1.27019 1.17438 1.25908 1.22272 0.91238 0.95244 0.99966 1.21907 0.83398 0.98867 0.97447 1.46504 1.08697 1.53699 1.07717 1.26613 0.98692 1.04279 0.83740 1.74289 1.01268 1.18066 1.20333 1.74279 1.26819 1.18130 0.94646 1.26576 0.80357 1.04518 1.02257 1.20587 1.01462 0.92978 1.04307 1.20926 0.98559 0.96428 0.99463 0.91000 0.88151 0.88454 0.92800 0.92453 0.78103 0.90033 0.93571 0.83509 0.89950 0.94239 0.88268 0.87092 0.76480 0.76657 0.88981 0.86180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.35 10.97 55.54 0.61 -19.74 16 2 C 0.07 1.85 5.13 -17.34 -0.09 1.76 16 3 Si 0.91 18.35 29.60 -169.99 -5.03 13.32 16 4 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 5 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 6 H -0.26 -5.24 7.11 56.52 0.40 -4.83 16 7 C -0.46 -12.08 9.04 -37.83 -0.34 -12.42 16 8 H 0.08 1.94 7.91 -52.48 -0.41 1.52 16 9 C 0.09 2.29 5.57 -106.80 -0.60 1.70 16 10 C -0.20 -4.75 9.74 -39.25 -0.38 -5.13 16 11 C -0.11 -2.54 9.92 -39.83 -0.40 -2.93 16 12 C -0.01 -0.27 6.71 -38.78 -0.26 -0.53 16 13 O -0.32 -6.16 10.09 -23.59 -0.24 -6.40 16 14 C 0.04 0.54 4.36 37.16 0.16 0.70 16 15 C 0.12 1.22 3.45 -26.73 -0.09 1.12 16 16 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 17 O -0.54 -6.36 13.17 -40.09 -0.53 -6.89 16 18 C 0.03 0.23 5.35 -3.82 -0.02 0.21 16 19 N -0.67 -3.84 6.37 -113.78 -0.72 -4.56 16 20 C 0.04 0.19 6.01 -3.83 -0.02 0.16 16 21 C 0.11 0.31 6.46 -4.05 -0.03 0.28 16 22 N -0.47 -2.58 2.75 -119.97 -0.33 -2.91 16 23 C 0.15 1.07 12.74 -89.95 -1.15 -0.07 16 24 N -0.30 -3.34 12.21 29.69 0.36 -2.97 16 25 N -0.30 -3.33 12.21 29.69 0.36 -2.96 16 26 C 0.15 1.04 12.74 -89.94 -1.15 -0.11 16 27 C -0.17 -3.95 8.97 -39.83 -0.36 -4.31 16 28 C -0.13 -3.40 8.64 -39.25 -0.34 -3.74 16 29 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 30 H 0.10 2.26 8.06 -52.48 -0.42 1.84 16 31 H 0.10 2.02 8.06 -52.49 -0.42 1.59 16 32 H 0.05 0.73 7.63 -51.93 -0.40 0.33 16 33 H 0.06 0.79 7.66 -51.93 -0.40 0.40 16 34 H 0.37 3.31 9.05 45.56 0.41 3.72 16 35 H 0.08 0.58 8.14 -51.92 -0.42 0.16 16 36 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.35 1.69 8.73 -39.29 -0.34 1.34 16 38 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 40 H 0.10 0.14 8.14 -51.93 -0.42 -0.28 16 41 H 0.11 0.26 8.14 -51.93 -0.42 -0.16 16 42 H 0.22 0.68 8.06 -52.48 -0.42 0.26 16 43 H 0.22 0.65 8.06 -52.49 -0.42 0.22 16 44 H 0.09 1.82 6.27 -52.49 -0.33 1.49 16 45 H 0.12 3.13 6.18 -52.49 -0.32 2.80 16 LS Contribution 384.47 15.07 5.79 5.79 Total: -1.00 -33.48 384.47 -10.35 -43.83 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -5.58 Total: 6.82 kcal Atomic # 6 Polarization: -18.26 SS G_CDS: -5.05 Total: -23.31 kcal Atomic # 7 Polarization: -33.44 SS G_CDS: 0.28 Total: -33.16 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: -0.77 Total: -13.29 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -5.03 Total: 13.32 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.48 -10.35 -43.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336826116.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.701 kcal (2) G-P(sol) polarization free energy of solvation -33.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds