Wall clock time and date at job start Sat Apr 11 2020 03:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30886 * 1 3 3 Si 1.86792 * 120.00251 * 2 1 4 4 H 1.48508 * 109.47014 * 239.99565 * 3 2 1 5 5 H 1.48495 * 109.47153 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47147 * 120.00067 * 3 2 1 7 7 C 1.39890 * 119.99515 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99848 * 197.93380 * 7 2 1 9 9 C 1.41218 * 120.00080 * 17.93469 * 7 2 1 10 10 C 1.40830 * 120.18036 * 24.54879 * 9 7 2 11 11 C 1.36440 * 119.81285 * 180.02562 * 10 9 7 12 12 C 1.39309 * 120.18410 * 0.02562 * 11 10 9 13 13 O 1.35672 * 119.81578 * 179.97438 * 12 11 10 14 14 C 1.42906 * 116.99791 * 179.97438 * 13 12 11 15 15 C 1.52999 * 109.47017 * 180.02562 * 14 13 12 16 16 H 1.09003 * 109.47194 * 54.99550 * 15 14 13 17 17 O 1.42904 * 109.47034 * 295.00165 * 15 14 13 18 18 C 1.52996 * 109.47416 * 174.99805 * 15 14 13 19 19 N 1.46895 * 109.47519 * 184.99582 * 18 15 14 20 20 C 1.46900 * 110.99983 * 180.02562 * 19 18 15 21 21 C 1.53003 * 109.47114 * 180.02562 * 20 19 18 22 22 N 1.46497 * 109.47201 * 180.02562 * 21 20 19 23 23 C 1.35488 * 126.98236 * 269.68367 * 22 21 20 24 24 N 1.30513 * 107.31274 * 179.83888 * 23 22 21 25 25 N 1.28599 * 109.66971 * 0.43449 * 24 23 22 26 26 C 1.30517 * 109.67159 * 359.72961 * 25 24 23 27 27 C 1.39311 * 120.36465 * 0.25103 * 12 11 10 28 28 C 1.36438 * 120.18358 * 359.48525 * 27 12 11 29 29 H 0.96999 * 119.99379 * 0.02562 * 1 2 3 30 30 H 1.07998 * 120.09104 * 0.02562 * 10 9 7 31 31 H 1.07999 * 119.90304 * 179.97438 * 11 10 9 32 32 H 1.08997 * 109.46784 * 299.99725 * 14 13 12 33 33 H 1.08992 * 109.47054 * 60.00291 * 14 13 12 34 34 H 0.96696 * 113.99731 * 299.99627 * 17 15 14 35 35 H 1.08994 * 109.47407 * 305.00428 * 18 15 14 36 36 H 1.09011 * 109.46546 * 64.99967 * 18 15 14 37 37 H 1.00907 * 110.99647 * 56.04827 * 19 18 15 38 38 H 1.08993 * 109.47185 * 300.00077 * 20 19 18 39 39 H 1.09002 * 109.47082 * 60.00701 * 20 19 18 40 40 H 1.09008 * 109.46921 * 300.00212 * 21 20 19 41 41 H 1.08996 * 109.47321 * 59.99769 * 21 20 19 42 42 H 1.08010 * 126.34280 * 359.97438 * 23 22 21 43 43 H 1.08004 * 126.34635 * 179.97438 * 26 25 24 44 44 H 1.08000 * 119.90938 * 179.72010 * 27 12 11 45 45 H 1.08003 * 120.09115 * 180.25228 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6176 0.0000 4 1 3.0968 1.6962 -1.2125 5 1 1.2780 2.7464 -0.0006 6 1 3.0967 1.6963 1.2125 7 6 2.0082 -1.2115 0.0005 8 1 3.0488 -1.2342 0.2885 9 6 1.3535 -2.4049 -0.3755 10 6 0.2245 -2.3585 -1.2161 11 6 -0.4026 -3.5161 -1.5743 12 6 0.0706 -4.7415 -1.1105 13 8 -0.5590 -5.8879 -1.4710 14 6 -0.0225 -7.1105 -0.9614 15 6 -0.8579 -8.2861 -1.4723 16 1 -0.9051 -8.2524 -2.5608 17 8 -2.1794 -8.2003 -0.9354 18 6 -0.2122 -9.6008 -1.0303 19 7 -0.9453 -10.7290 -1.6198 20 6 -0.3525 -12.0109 -1.2157 21 6 -1.1409 -13.1594 -1.8484 22 7 -0.5500 -14.4378 -1.4450 23 6 0.4261 -15.1234 -2.0874 24 7 0.6614 -16.2046 -1.3952 25 7 -0.1127 -16.2384 -0.3688 26 6 -0.8729 -15.1776 -0.3567 27 6 1.1834 -4.7958 -0.2741 28 6 1.8251 -3.6479 0.0892 29 1 -0.4849 0.8401 -0.0004 30 1 -0.1439 -1.4092 -1.5761 31 1 -1.2688 -3.4821 -2.2185 32 1 1.0077 -7.2237 -1.2988 33 1 -0.0483 -7.0924 0.1281 34 1 -2.2138 -8.2244 0.0307 35 1 0.8248 -9.6268 -1.3647 36 1 -0.2453 -9.6744 0.0569 37 1 -0.9844 -10.6492 -2.6250 38 1 0.6837 -12.0538 -1.5512 39 1 -0.3869 -12.1009 -0.1300 40 1 -2.1773 -13.1166 -1.5133 41 1 -1.1061 -13.0692 -2.9341 42 1 0.9198 -14.8287 -3.0017 43 1 -1.6210 -14.9346 0.3834 44 1 1.5413 -5.7495 0.0848 45 1 2.6901 -3.6921 0.7344 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336826117.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:07:02 Heat of formation + Delta-G solvation = 17.060324 kcal Electronic energy + Delta-G solvation = -26232.620845 eV Core-core repulsion = 22251.937043 eV Total energy + Delta-G solvation = -3980.683802 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.52505 -39.23552 -38.14849 -36.92370 -36.07053 -34.76211 -33.36839 -31.21068 -31.00286 -29.90403 -29.18113 -28.60316 -25.59326 -24.60200 -23.46283 -22.74445 -22.39946 -21.97360 -20.75357 -20.63479 -18.08192 -17.41751 -17.38710 -16.96587 -16.47414 -16.29723 -15.91343 -15.61887 -15.35776 -15.13872 -15.02542 -14.40031 -14.30458 -14.13406 -13.96906 -13.44668 -13.23460 -12.86190 -12.57088 -12.31150 -12.19912 -12.05963 -11.92354 -11.83792 -11.47231 -11.17245 -11.08393 -10.91314 -10.81568 -10.74291 -10.66151 -10.08870 -10.02720 -9.88555 -9.87128 -9.39191 -9.09850 -9.06174 -7.70301 -7.09190 -6.77065 -4.30673 1.35216 1.91368 2.49356 2.74153 2.89329 3.04944 3.07082 3.18049 3.30098 3.86065 3.91185 3.98413 4.09623 4.13162 4.23053 4.33854 4.54301 4.56738 4.69276 4.73442 4.82627 4.86758 5.03848 5.05769 5.13289 5.26512 5.35024 5.50083 5.61357 5.66994 5.85873 5.98703 6.16495 6.20268 6.35522 6.65600 6.67983 6.92205 7.05640 7.13216 7.40221 7.49919 7.61324 7.72932 7.95129 8.15041 8.28373 8.38740 8.59524 8.84843 8.93078 10.17437 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.038803 B = 0.001466 C = 0.001435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.423823 B =19096.892269 C =19509.417512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.075 3.925 3 Si 0.908 3.092 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.464 4.464 8 H 0.076 0.924 9 C 0.089 3.911 10 C -0.134 4.134 11 C -0.118 4.118 12 C -0.012 4.012 13 O -0.317 6.317 14 C 0.038 3.962 15 C 0.116 3.884 16 H 0.104 0.896 17 O -0.540 6.540 18 C 0.032 3.968 19 N -0.675 5.675 20 C 0.043 3.957 21 C 0.107 3.893 22 N -0.475 5.475 23 C 0.151 3.849 24 N -0.300 5.300 25 N -0.301 5.301 26 C 0.155 3.845 27 C -0.168 4.168 28 C -0.199 4.199 29 H 0.281 0.719 30 H 0.126 0.874 31 H 0.098 0.902 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.372 0.628 35 H 0.045 0.955 36 H 0.082 0.918 37 H 0.346 0.654 38 H 0.039 0.961 39 H 0.082 0.918 40 H 0.111 0.889 41 H 0.099 0.901 42 H 0.217 0.783 43 H 0.219 0.781 44 H 0.092 0.908 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.866 -20.310 -3.810 20.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.142 4.142 3 Si 0.732 3.268 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.191 1.191 7 C -0.494 4.494 8 H 0.094 0.906 9 C 0.086 3.914 10 C -0.153 4.153 11 C -0.137 4.137 12 C -0.055 4.055 13 O -0.232 6.232 14 C -0.040 4.040 15 C 0.055 3.945 16 H 0.122 0.878 17 O -0.344 6.344 18 C -0.098 4.098 19 N -0.307 5.307 20 C -0.087 4.087 21 C -0.016 4.016 22 N -0.166 5.166 23 C -0.137 4.137 24 N -0.139 5.139 25 N -0.140 5.140 26 C -0.133 4.133 27 C -0.186 4.186 28 C -0.219 4.219 29 H 0.092 0.908 30 H 0.144 0.856 31 H 0.116 0.884 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.219 0.781 35 H 0.064 0.936 36 H 0.100 0.900 37 H 0.165 0.835 38 H 0.058 0.942 39 H 0.101 0.899 40 H 0.129 0.871 41 H 0.118 0.882 42 H 0.233 0.767 43 H 0.235 0.765 44 H 0.110 0.890 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.260 -21.454 -3.631 22.002 hybrid contribution 1.063 2.045 -0.071 2.306 sum -2.197 -19.409 -3.703 19.880 Atomic orbital electron populations 1.69826 1.07513 1.29316 1.35687 1.25881 0.94727 1.01240 0.92332 0.86375 0.80136 0.80320 0.79924 1.18871 1.20340 1.19082 1.19437 0.98099 0.91262 1.40596 0.90574 1.17598 0.91843 0.92106 0.89823 1.20985 0.98492 0.96320 0.99499 1.19839 1.00743 0.90202 1.02880 1.18604 0.97046 0.84788 1.05061 1.85881 1.54630 1.12005 1.70720 1.23083 0.97177 0.85278 0.98419 1.21821 0.83033 0.89882 0.99723 0.87773 1.86637 1.26003 1.96301 1.25502 1.22599 0.95659 0.90627 1.00880 1.60220 1.54609 1.00188 1.15643 1.22271 0.96042 0.88765 1.01615 1.21911 0.99038 0.79071 1.01625 1.46499 1.30006 1.19377 1.20729 1.26575 0.93410 0.91830 1.01908 1.74281 1.19600 1.17617 1.02382 1.74289 1.05798 1.18837 1.15034 1.26615 1.03348 0.90627 0.92720 1.20381 0.98030 0.97696 1.02534 1.20550 1.03168 0.92544 1.05647 0.90801 0.85643 0.88417 0.92579 0.92818 0.78091 0.93637 0.90004 0.83515 0.94246 0.89946 0.87092 0.88244 0.76654 0.76472 0.89033 0.88776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.35 10.96 55.54 0.61 -19.75 16 2 C 0.08 1.86 5.13 -17.34 -0.09 1.78 16 3 Si 0.91 18.37 29.59 -169.99 -5.03 13.34 16 4 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 5 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 6 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 7 C -0.46 -12.12 9.04 -37.83 -0.34 -12.46 16 8 H 0.08 1.90 7.91 -52.49 -0.41 1.49 16 9 C 0.09 2.33 5.57 -106.81 -0.60 1.73 16 10 C -0.13 -3.43 8.64 -39.25 -0.34 -3.77 16 11 C -0.12 -2.80 9.92 -39.83 -0.40 -3.20 16 12 C -0.01 -0.27 6.71 -38.78 -0.26 -0.53 16 13 O -0.32 -6.14 10.09 -23.57 -0.24 -6.38 16 14 C 0.04 0.52 4.37 37.16 0.16 0.68 16 15 C 0.12 1.20 3.43 -26.73 -0.09 1.11 16 16 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 17 O -0.54 -6.46 13.25 -40.08 -0.53 -6.99 16 18 C 0.03 0.22 5.32 -3.83 -0.02 0.20 16 19 N -0.67 -3.73 6.45 -113.78 -0.73 -4.46 16 20 C 0.04 0.18 6.01 -3.82 -0.02 0.15 16 21 C 0.11 0.29 6.46 -4.04 -0.03 0.27 16 22 N -0.47 -2.50 2.75 -119.97 -0.33 -2.83 16 23 C 0.15 1.01 12.74 -89.96 -1.15 -0.14 16 24 N -0.30 -3.27 12.21 29.69 0.36 -2.91 16 25 N -0.30 -3.29 12.21 29.69 0.36 -2.92 16 26 C 0.15 1.05 12.74 -89.95 -1.15 -0.10 16 27 C -0.17 -3.66 8.96 -39.83 -0.36 -4.01 16 28 C -0.20 -4.78 9.74 -39.25 -0.38 -5.17 16 29 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 30 H 0.13 3.30 6.16 -52.49 -0.32 2.97 16 31 H 0.10 2.16 8.06 -52.49 -0.42 1.73 16 32 H 0.06 0.73 7.66 -51.93 -0.40 0.33 16 33 H 0.05 0.71 7.63 -51.93 -0.40 0.32 16 34 H 0.37 3.36 9.04 45.56 0.41 3.77 16 35 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.08 0.55 8.14 -51.92 -0.42 0.13 16 37 H 0.35 1.61 8.73 -39.29 -0.34 1.27 16 38 H 0.04 0.18 8.14 -51.93 -0.42 -0.25 16 39 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.11 0.25 8.14 -51.92 -0.42 -0.17 16 41 H 0.10 0.13 8.14 -51.93 -0.42 -0.30 16 42 H 0.22 0.60 8.06 -52.48 -0.42 0.18 16 43 H 0.22 0.66 8.06 -52.48 -0.42 0.23 16 44 H 0.09 1.70 6.27 -52.49 -0.33 1.37 16 45 H 0.09 2.11 8.06 -52.48 -0.42 1.69 16 LS Contribution 384.56 15.07 5.80 5.80 Total: -1.00 -33.60 384.56 -10.36 -43.96 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -5.58 Total: 6.61 kcal Atomic # 6 Polarization: -18.40 SS G_CDS: -5.05 Total: -23.45 kcal Atomic # 7 Polarization: -33.15 SS G_CDS: 0.27 Total: -32.87 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: -0.77 Total: -13.38 kcal Atomic # 14 Polarization: 18.37 SS G_CDS: -5.03 Total: 13.34 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.60 -10.36 -43.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336826117.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.022 kcal (2) G-P(sol) polarization free energy of solvation -33.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds