Wall clock time and date at job start Sat Apr 11 2020 03:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30886 * 1 3 3 Si 1.86792 * 120.00251 * 2 1 4 4 H 1.48508 * 109.47014 * 239.99565 * 3 2 1 5 5 H 1.48495 * 109.47153 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47147 * 120.00067 * 3 2 1 7 7 C 1.39890 * 119.99515 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99848 * 197.93380 * 7 2 1 9 9 C 1.41218 * 120.00080 * 17.93469 * 7 2 1 10 10 C 1.40830 * 120.18036 * 24.54879 * 9 7 2 11 11 C 1.36440 * 119.81285 * 180.02562 * 10 9 7 12 12 C 1.39309 * 120.18410 * 0.02562 * 11 10 9 13 13 O 1.35672 * 119.81578 * 179.97438 * 12 11 10 14 14 C 1.42906 * 116.99791 * 179.97438 * 13 12 11 15 15 C 1.52999 * 109.47017 * 180.02562 * 14 13 12 16 16 H 1.09003 * 109.47194 * 54.99550 * 15 14 13 17 17 O 1.42904 * 109.47034 * 295.00165 * 15 14 13 18 18 C 1.52996 * 109.47416 * 174.99805 * 15 14 13 19 19 N 1.46895 * 109.47519 * 184.99582 * 18 15 14 20 20 C 1.46900 * 110.99983 * 180.02562 * 19 18 15 21 21 C 1.53003 * 109.47114 * 180.02562 * 20 19 18 22 22 N 1.46497 * 109.47201 * 180.02562 * 21 20 19 23 23 C 1.35488 * 126.98236 * 269.68367 * 22 21 20 24 24 N 1.30513 * 107.31274 * 179.83888 * 23 22 21 25 25 N 1.28599 * 109.66971 * 0.43449 * 24 23 22 26 26 C 1.30517 * 109.67159 * 359.72961 * 25 24 23 27 27 C 1.39311 * 120.36465 * 0.25103 * 12 11 10 28 28 C 1.36438 * 120.18358 * 359.48525 * 27 12 11 29 29 H 0.96999 * 119.99379 * 0.02562 * 1 2 3 30 30 H 1.07998 * 120.09104 * 0.02562 * 10 9 7 31 31 H 1.07999 * 119.90304 * 179.97438 * 11 10 9 32 32 H 1.08997 * 109.46784 * 299.99725 * 14 13 12 33 33 H 1.08992 * 109.47054 * 60.00291 * 14 13 12 34 34 H 0.96696 * 113.99731 * 299.99627 * 17 15 14 35 35 H 1.08994 * 109.47407 * 305.00428 * 18 15 14 36 36 H 1.09011 * 109.46546 * 64.99967 * 18 15 14 37 37 H 1.00907 * 110.99647 * 56.04827 * 19 18 15 38 38 H 1.08993 * 109.47185 * 300.00077 * 20 19 18 39 39 H 1.09002 * 109.47082 * 60.00701 * 20 19 18 40 40 H 1.09008 * 109.46921 * 300.00212 * 21 20 19 41 41 H 1.08996 * 109.47321 * 59.99769 * 21 20 19 42 42 H 1.08010 * 126.34280 * 359.97438 * 23 22 21 43 43 H 1.08004 * 126.34635 * 179.97438 * 26 25 24 44 44 H 1.08000 * 119.90938 * 179.72010 * 27 12 11 45 45 H 1.08003 * 120.09115 * 180.25228 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6176 0.0000 4 1 3.0968 1.6962 -1.2125 5 1 1.2780 2.7464 -0.0006 6 1 3.0967 1.6963 1.2125 7 6 2.0082 -1.2115 0.0005 8 1 3.0488 -1.2342 0.2885 9 6 1.3535 -2.4049 -0.3755 10 6 0.2245 -2.3585 -1.2161 11 6 -0.4026 -3.5161 -1.5743 12 6 0.0706 -4.7415 -1.1105 13 8 -0.5590 -5.8879 -1.4710 14 6 -0.0225 -7.1105 -0.9614 15 6 -0.8579 -8.2861 -1.4723 16 1 -0.9051 -8.2524 -2.5608 17 8 -2.1794 -8.2003 -0.9354 18 6 -0.2122 -9.6008 -1.0303 19 7 -0.9453 -10.7290 -1.6198 20 6 -0.3525 -12.0109 -1.2157 21 6 -1.1409 -13.1594 -1.8484 22 7 -0.5500 -14.4378 -1.4450 23 6 0.4261 -15.1234 -2.0874 24 7 0.6614 -16.2046 -1.3952 25 7 -0.1127 -16.2384 -0.3688 26 6 -0.8729 -15.1776 -0.3567 27 6 1.1834 -4.7958 -0.2741 28 6 1.8251 -3.6479 0.0892 29 1 -0.4849 0.8401 -0.0004 30 1 -0.1439 -1.4092 -1.5761 31 1 -1.2688 -3.4821 -2.2185 32 1 1.0077 -7.2237 -1.2988 33 1 -0.0483 -7.0924 0.1281 34 1 -2.2138 -8.2244 0.0307 35 1 0.8248 -9.6268 -1.3647 36 1 -0.2453 -9.6744 0.0569 37 1 -0.9844 -10.6492 -2.6250 38 1 0.6837 -12.0538 -1.5512 39 1 -0.3869 -12.1009 -0.1300 40 1 -2.1773 -13.1166 -1.5133 41 1 -1.1061 -13.0692 -2.9341 42 1 0.9198 -14.8287 -3.0017 43 1 -1.6210 -14.9346 0.3834 44 1 1.5413 -5.7495 0.0848 45 1 2.6901 -3.6921 0.7344 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336826117.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:07:01 Heat of formation + Delta-G solvation = -4.977544 kcal Electronic energy + Delta-G solvation = -26233.576479 eV Core-core repulsion = 22251.937043 eV Total energy + Delta-G solvation = -3981.639436 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.03490 -40.65461 -39.15104 -37.99427 -37.15667 -35.31531 -35.17358 -32.16733 -31.55303 -31.45705 -30.89664 -29.44288 -26.88846 -25.87797 -24.03214 -23.28909 -23.23003 -22.65790 -22.44201 -22.09361 -19.25748 -18.81875 -18.34212 -17.86439 -17.31494 -17.12018 -16.99197 -16.54602 -16.14106 -16.06452 -15.74633 -15.58789 -15.42884 -15.22499 -14.84922 -14.69585 -14.15002 -14.07022 -13.92626 -13.66400 -13.48319 -13.16796 -12.93231 -12.78767 -12.63566 -12.51050 -12.41219 -12.36140 -11.91915 -11.71701 -11.59380 -11.33864 -11.29237 -11.16075 -10.90286 -10.85467 -10.45381 -9.56632 -9.50458 -8.92817 -8.59921 -6.23214 0.90883 0.95210 1.02285 1.39773 1.50484 1.54286 1.54550 1.92367 2.22481 2.40441 2.72506 3.20414 3.53231 3.62546 3.69844 3.76299 3.84526 3.88841 3.94990 4.00620 4.08445 4.28544 4.31047 4.35162 4.37632 4.42355 4.44648 4.47441 4.64005 4.80824 4.86580 4.95256 5.02924 5.07329 5.21579 5.22394 5.27891 5.58077 5.64017 5.77398 5.87785 5.98204 6.05303 6.26199 6.31230 6.56206 6.80049 6.88848 6.94725 7.10022 7.74211 8.36440 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.038803 B = 0.001466 C = 0.001435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.423823 B =19096.892269 C =19509.417512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.034 3.966 3 Si 0.981 3.019 4 H -0.261 1.261 5 H -0.269 1.269 6 H -0.260 1.260 7 C -0.501 4.501 8 H 0.076 0.924 9 C 0.054 3.946 10 C -0.153 4.153 11 C -0.134 4.134 12 C 0.001 3.999 13 O -0.330 6.330 14 C 0.026 3.974 15 C 0.125 3.875 16 H 0.101 0.899 17 O -0.560 6.560 18 C 0.043 3.957 19 N -0.678 5.678 20 C 0.050 3.950 21 C 0.112 3.888 22 N -0.469 5.469 23 C 0.160 3.840 24 N -0.355 5.355 25 N -0.355 5.355 26 C 0.162 3.838 27 C -0.165 4.165 28 C -0.208 4.208 29 H 0.287 0.713 30 H 0.109 0.891 31 H 0.107 0.893 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.384 0.616 35 H 0.055 0.945 36 H 0.087 0.913 37 H 0.353 0.647 38 H 0.039 0.961 39 H 0.075 0.925 40 H 0.121 0.879 41 H 0.121 0.879 42 H 0.251 0.749 43 H 0.250 0.750 44 H 0.130 0.870 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.749 -21.033 -4.071 21.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.180 4.180 3 Si 0.802 3.198 4 H -0.186 1.186 5 H -0.193 1.193 6 H -0.184 1.184 7 C -0.531 4.531 8 H 0.094 0.906 9 C 0.052 3.948 10 C -0.172 4.172 11 C -0.153 4.153 12 C -0.043 4.043 13 O -0.246 6.246 14 C -0.050 4.050 15 C 0.065 3.935 16 H 0.118 0.882 17 O -0.366 6.366 18 C -0.086 4.086 19 N -0.311 5.311 20 C -0.080 4.080 21 C -0.010 4.010 22 N -0.160 5.160 23 C -0.129 4.129 24 N -0.193 5.193 25 N -0.193 5.193 26 C -0.127 4.127 27 C -0.184 4.184 28 C -0.228 4.228 29 H 0.098 0.902 30 H 0.127 0.873 31 H 0.125 0.875 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.232 0.768 35 H 0.073 0.927 36 H 0.105 0.895 37 H 0.172 0.828 38 H 0.057 0.943 39 H 0.093 0.907 40 H 0.139 0.861 41 H 0.139 0.861 42 H 0.267 0.733 43 H 0.266 0.734 44 H 0.147 0.853 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.148 -22.211 -3.889 22.768 hybrid contribution 0.937 2.106 -0.017 2.305 sum -2.211 -20.106 -3.906 20.600 Atomic orbital electron populations 1.69887 1.08961 1.30533 1.36390 1.26723 0.95464 1.04445 0.91339 0.85268 0.78758 0.75775 0.79998 1.18566 1.19348 1.18395 1.19696 0.98390 0.92455 1.42511 0.90579 1.17958 0.92690 0.93375 0.90815 1.20898 0.99320 0.96425 1.00571 1.20011 1.01168 0.90701 1.03398 1.18670 0.96507 0.85566 1.03569 1.85877 1.54914 1.12759 1.71012 1.23539 0.98557 0.83784 0.99127 1.21781 0.82241 0.90100 0.99407 0.88152 1.86606 1.26911 1.96383 1.26750 1.22407 0.95749 0.89254 1.01232 1.60156 1.54549 1.00215 1.16180 1.22190 0.96134 0.88401 1.01265 1.22029 0.98946 0.77248 1.02808 1.46612 1.29510 1.19798 1.20047 1.27195 0.92872 0.90679 1.02119 1.74168 1.21353 1.20197 1.03616 1.74176 1.07575 1.21347 1.16227 1.27193 1.02682 0.89626 0.93184 1.20695 0.97319 0.98643 1.01694 1.20801 1.03673 0.92620 1.05718 0.90201 0.87317 0.87506 0.91293 0.91934 0.76769 0.92738 0.89480 0.82778 0.94279 0.90658 0.86099 0.86114 0.73326 0.73429 0.85268 0.87690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.54 10.96 21.82 0.24 -43.30 16 2 C 0.03 1.72 5.13 85.23 0.44 2.16 16 3 Si 0.98 37.92 29.59 68.60 2.03 39.95 16 4 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 5 H -0.27 -9.87 7.11 99.48 0.71 -9.16 16 6 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 7 C -0.50 -26.82 9.04 23.40 0.21 -26.61 16 8 H 0.08 3.90 7.91 -2.91 -0.02 3.88 16 9 C 0.05 2.89 5.57 -21.28 -0.12 2.77 16 10 C -0.15 -8.10 8.64 22.48 0.19 -7.90 16 11 C -0.13 -6.45 9.92 22.11 0.22 -6.23 16 12 C 0.00 0.03 6.71 22.79 0.15 0.19 16 13 O -0.33 -12.21 10.09 -85.26 -0.86 -13.07 16 14 C 0.03 0.65 4.37 71.98 0.31 0.96 16 15 C 0.12 2.26 3.43 30.59 0.10 2.36 16 16 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 17 O -0.56 -12.13 13.25 -144.34 -1.91 -14.04 16 18 C 0.04 0.47 5.32 86.30 0.46 0.92 16 19 N -0.68 -5.23 6.45 -513.90 -3.31 -8.55 16 20 C 0.05 0.25 6.01 86.30 0.52 0.76 16 21 C 0.11 0.23 6.46 86.38 0.56 0.78 16 22 N -0.47 -3.81 2.75 -533.48 -1.47 -5.28 16 23 C 0.16 1.86 12.74 180.12 2.30 4.15 16 24 N -0.36 -7.69 12.21 -59.99 -0.73 -8.42 16 25 N -0.35 -7.74 12.21 -59.99 -0.73 -8.47 16 26 C 0.16 1.95 12.74 180.11 2.30 4.25 16 27 C -0.16 -6.92 8.96 22.11 0.20 -6.73 16 28 C -0.21 -9.96 9.74 22.48 0.22 -9.74 16 29 H 0.29 13.66 8.30 -92.71 -0.77 12.89 16 30 H 0.11 6.01 6.16 -2.91 -0.02 5.99 16 31 H 0.11 4.79 8.06 -2.91 -0.02 4.76 16 32 H 0.07 1.56 7.66 -2.39 -0.02 1.54 16 33 H 0.06 1.46 7.63 -2.39 -0.02 1.44 16 34 H 0.38 6.05 9.04 -74.06 -0.67 5.38 16 35 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 37 H 0.35 2.06 8.73 -89.69 -0.78 1.28 16 38 H 0.04 0.22 8.14 -2.39 -0.02 0.20 16 39 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 40 H 0.12 0.10 8.14 -2.38 -0.02 0.08 16 41 H 0.12 -0.20 8.14 -2.39 -0.02 -0.22 16 42 H 0.25 0.68 8.06 -2.91 -0.02 0.66 16 43 H 0.25 0.93 8.06 -2.91 -0.02 0.91 16 44 H 0.13 4.35 6.27 -2.91 -0.02 4.34 16 45 H 0.10 4.65 8.06 -2.91 -0.02 4.63 16 Total: -1.00 -75.79 384.56 0.88 -74.91 By element: Atomic # 1 Polarization: 24.59 SS G_CDS: -0.43 Total: 24.17 kcal Atomic # 6 Polarization: -45.95 SS G_CDS: 8.06 Total: -37.89 kcal Atomic # 7 Polarization: -68.02 SS G_CDS: -6.01 Total: -74.03 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: -2.77 Total: -27.10 kcal Atomic # 14 Polarization: 37.92 SS G_CDS: 2.03 Total: 39.95 kcal Total: -75.79 0.88 -74.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336826117.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.933 kcal (2) G-P(sol) polarization free energy of solvation -75.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds