Wall clock time and date at job start Sat Apr 11 2020 03:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30878 * 1 3 3 Si 1.86807 * 119.99803 * 2 1 4 4 H 1.48498 * 109.46956 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47162 * 299.99816 * 3 2 1 6 6 H 1.48501 * 109.46911 * 59.99936 * 3 2 1 7 7 C 1.39890 * 119.99969 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99807 * 197.94217 * 7 2 1 9 9 C 1.41213 * 120.00184 * 17.94467 * 7 2 1 10 10 C 1.40835 * 120.17732 * 24.54499 * 9 7 2 11 11 C 1.36436 * 119.80910 * 180.02562 * 10 9 7 12 12 C 1.39312 * 120.18824 * 359.97438 * 11 10 9 13 13 O 1.35672 * 119.81994 * 179.97438 * 12 11 10 14 14 C 1.42899 * 116.99863 * 179.97438 * 13 12 11 15 15 C 1.53001 * 109.47072 * 180.02562 * 14 13 12 16 16 H 1.09002 * 109.47334 * 305.00761 * 15 14 13 17 17 O 1.42900 * 109.47157 * 65.00431 * 15 14 13 18 18 C 1.53003 * 109.47397 * 185.00298 * 15 14 13 19 19 N 1.46900 * 109.47144 * 180.02562 * 18 15 14 20 20 C 1.46897 * 110.99915 * 179.97438 * 19 18 15 21 21 C 1.52998 * 109.47360 * 179.97438 * 20 19 18 22 22 N 1.46503 * 109.47345 * 180.02562 * 21 20 19 23 23 C 1.35310 * 125.86696 * 124.99933 * 22 21 20 24 24 C 1.35350 * 106.17296 * 180.02562 * 23 22 21 25 25 N 1.33774 * 106.49675 * 359.97438 * 24 23 22 26 26 N 1.28628 * 108.88462 * 0.02562 * 25 24 23 27 27 C 1.39315 * 120.36020 * 0.26260 * 12 11 10 28 28 C 1.36439 * 120.18830 * 359.48067 * 27 12 11 29 29 H 0.97003 * 120.00403 * 0.02562 * 1 2 3 30 30 H 1.08000 * 120.09690 * 359.97438 * 10 9 7 31 31 H 1.08001 * 119.90537 * 179.97438 * 11 10 9 32 32 H 1.09003 * 109.47177 * 60.00328 * 14 13 12 33 33 H 1.09001 * 109.47410 * 300.00063 * 14 13 12 34 34 H 0.96701 * 113.99981 * 59.99495 * 17 15 14 35 35 H 1.09000 * 109.47061 * 59.99894 * 18 15 14 36 36 H 1.08997 * 109.46837 * 299.99928 * 18 15 14 37 37 H 1.00899 * 110.99925 * 303.95626 * 19 18 15 38 38 H 1.09005 * 109.46764 * 60.00417 * 20 19 18 39 39 H 1.09002 * 109.47561 * 300.00383 * 20 19 18 40 40 H 1.08999 * 109.47163 * 60.00218 * 21 20 19 41 41 H 1.09002 * 109.47117 * 300.00680 * 21 20 19 42 42 H 1.07998 * 126.91778 * 0.02562 * 23 22 21 43 43 H 1.08000 * 126.75327 * 179.97438 * 24 23 22 44 44 H 1.08004 * 119.90391 * 179.72205 * 27 12 11 45 45 H 1.08000 * 120.09599 * 180.25646 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 3.7027 1.3465 -0.0006 5 1 1.8840 2.3965 -1.2125 6 1 1.8839 2.3965 1.2125 7 6 2.0082 -1.2115 0.0005 8 1 3.0489 -1.2341 0.2887 9 6 1.3537 -2.4049 -0.3757 10 6 0.2248 -2.3584 -1.2164 11 6 -0.4022 -3.5159 -1.5748 12 6 0.0718 -4.7415 -1.1120 13 8 -0.5577 -5.8880 -1.4727 14 6 -0.0205 -7.1106 -0.9641 15 6 -0.8558 -8.2863 -1.4750 16 1 -1.9023 -8.1292 -1.2136 17 8 -0.7285 -8.3794 -2.8953 18 6 -0.3585 -9.5827 -0.8324 19 7 -1.1601 -10.7115 -1.3234 20 6 -0.7096 -11.9760 -0.7268 21 6 -1.5666 -13.1256 -1.2605 22 7 -1.1177 -14.3867 -0.6651 23 6 -1.8936 -15.2638 0.0127 24 6 -1.0792 -16.2794 0.3833 25 7 0.1389 -15.9781 -0.0804 26 7 0.0826 -14.8504 -0.6966 27 6 1.1850 -4.7958 -0.2761 28 6 1.8266 -3.6479 0.0875 29 1 -0.4851 0.8400 -0.0004 30 1 -0.1442 -1.4090 -1.5757 31 1 -1.2683 -3.4821 -2.2190 32 1 -0.0455 -7.0931 0.1255 33 1 1.0097 -7.2233 -1.3021 34 1 0.1783 -8.5196 -3.2006 35 1 -0.4555 -9.5117 0.2510 36 1 0.6879 -9.7397 -1.0939 37 1 -2.1425 -10.5595 -1.1507 38 1 -0.8093 -11.9220 0.3573 39 1 0.3345 -12.1492 -0.9875 40 1 -1.4674 -13.1798 -2.3447 41 1 -2.6106 -12.9522 -0.9995 42 1 -2.9501 -15.1721 0.2170 43 1 -1.3580 -17.1599 0.9432 44 1 1.5434 -5.7497 0.0819 45 1 2.6919 -3.6921 0.7322 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338418309.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:07:05 Heat of formation + Delta-G solvation = 35.806216 kcal Electronic energy + Delta-G solvation = -26237.753299 eV Core-core repulsion = 22257.882380 eV Total energy + Delta-G solvation = -3979.870919 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.64666 -39.18973 -38.07987 -36.77722 -35.98567 -34.50121 -33.34469 -31.46849 -31.15099 -29.88996 -29.17000 -28.63508 -25.63071 -24.60716 -23.58412 -22.94866 -22.20439 -21.59493 -20.71517 -20.60146 -18.12725 -17.47351 -17.38698 -17.01132 -16.58060 -16.23095 -15.73536 -15.51434 -15.32072 -15.18720 -14.63303 -14.39167 -14.24950 -14.01320 -13.90525 -13.36770 -13.15331 -12.78523 -12.53168 -12.28759 -12.20885 -12.16850 -11.86651 -11.79963 -11.43942 -11.31373 -11.18568 -10.98350 -10.85058 -10.66127 -10.56750 -10.06605 -9.96847 -9.84443 -9.82170 -9.37004 -9.05144 -9.01806 -7.67585 -7.06549 -6.75157 -4.28294 1.16274 1.81012 2.18528 2.74302 2.91993 3.07330 3.12398 3.18108 3.35437 3.82057 3.93196 4.02148 4.12854 4.19847 4.40616 4.55304 4.58983 4.59155 4.77966 4.78499 4.80746 4.96352 5.10437 5.11971 5.19651 5.33367 5.35992 5.55567 5.63932 5.72902 5.91282 6.02123 6.07532 6.19362 6.29652 6.69118 6.75434 6.94800 7.08120 7.15653 7.42976 7.52612 7.67243 7.75777 7.97989 8.09716 8.17523 8.41671 8.62334 8.87305 8.95649 10.19313 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.038765 B = 0.001468 C = 0.001439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.134436 B =19069.428334 C =19449.276770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.075 3.925 3 Si 0.906 3.094 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.275 1.275 7 C -0.463 4.463 8 H 0.077 0.923 9 C 0.088 3.912 10 C -0.133 4.133 11 C -0.118 4.118 12 C -0.011 4.011 13 O -0.317 6.317 14 C 0.038 3.962 15 C 0.115 3.885 16 H 0.104 0.896 17 O -0.540 6.540 18 C 0.032 3.968 19 N -0.673 5.673 20 C 0.047 3.953 21 C 0.116 3.884 22 N -0.289 5.289 23 C -0.051 4.051 24 C -0.053 4.053 25 N -0.273 5.273 26 N -0.082 5.082 27 C -0.168 4.168 28 C -0.199 4.199 29 H 0.280 0.720 30 H 0.126 0.874 31 H 0.098 0.902 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.373 0.627 35 H 0.046 0.954 36 H 0.083 0.917 37 H 0.345 0.655 38 H 0.039 0.961 39 H 0.093 0.907 40 H 0.113 0.887 41 H 0.106 0.894 42 H 0.191 0.809 43 H 0.190 0.810 44 H 0.092 0.908 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.611 -23.416 0.012 24.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.142 4.142 3 Si 0.731 3.269 4 H -0.185 1.185 5 H -0.197 1.197 6 H -0.201 1.201 7 C -0.493 4.493 8 H 0.095 0.905 9 C 0.085 3.915 10 C -0.153 4.153 11 C -0.137 4.137 12 C -0.054 4.054 13 O -0.232 6.232 14 C -0.039 4.039 15 C 0.055 3.945 16 H 0.122 0.878 17 O -0.344 6.344 18 C -0.098 4.098 19 N -0.305 5.305 20 C -0.083 4.083 21 C -0.005 4.005 22 N -0.083 5.083 23 C -0.202 4.202 24 C -0.210 4.210 25 N -0.139 5.139 26 N -0.062 5.062 27 C -0.187 4.187 28 C -0.218 4.218 29 H 0.091 0.909 30 H 0.144 0.856 31 H 0.116 0.884 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.220 0.780 35 H 0.064 0.936 36 H 0.101 0.899 37 H 0.164 0.836 38 H 0.057 0.943 39 H 0.111 0.889 40 H 0.131 0.869 41 H 0.125 0.875 42 H 0.208 0.792 43 H 0.207 0.793 44 H 0.110 0.890 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.800 -22.994 -1.131 23.741 hybrid contribution -0.476 0.607 1.692 1.859 sum -6.276 -22.387 0.560 23.257 Atomic orbital electron populations 1.69839 1.07525 1.29074 1.36013 1.25880 0.94712 1.01247 0.92337 0.86292 0.80988 0.81084 0.78532 1.18460 1.19710 1.20071 1.19498 0.98126 0.91230 1.40443 0.90503 1.17609 0.91851 0.92127 0.89865 1.20985 0.98477 0.96324 0.99493 1.19839 1.00822 0.90208 1.02831 1.18612 0.97113 0.84789 1.04876 1.85878 1.54434 1.11980 1.70950 1.23084 0.97210 0.85221 0.98427 1.21821 1.00749 0.89975 0.81924 0.87831 1.86624 1.32988 1.95170 1.19620 1.22592 0.98880 0.90545 0.97782 1.60191 1.08049 1.00661 1.61594 1.22160 1.00779 0.88517 0.96832 1.22071 0.99534 0.78517 1.00400 1.47474 1.07291 1.17429 1.36121 1.23743 1.00596 0.93036 1.02799 1.23668 0.89836 1.01744 1.05775 1.75154 1.21757 1.06340 1.10638 1.78342 1.01735 1.07086 1.19020 1.20391 0.98020 0.97721 1.02537 1.20555 1.03118 0.92537 1.05635 0.90948 0.85645 0.88424 0.92548 0.92784 0.78046 0.93625 0.89889 0.83645 0.94328 0.88885 0.86934 0.87548 0.79220 0.79306 0.88990 0.88764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.54 10.96 55.54 0.61 -19.93 16 2 C 0.08 1.88 5.13 -17.34 -0.09 1.79 16 3 Si 0.91 18.55 29.60 -169.99 -5.03 13.52 16 4 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 5 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 6 H -0.28 -5.55 7.11 56.52 0.40 -5.14 16 7 C -0.46 -12.22 9.04 -37.83 -0.34 -12.56 16 8 H 0.08 1.95 7.91 -52.48 -0.41 1.54 16 9 C 0.09 2.33 5.57 -106.81 -0.60 1.74 16 10 C -0.13 -3.47 8.64 -39.25 -0.34 -3.81 16 11 C -0.12 -2.85 9.92 -39.83 -0.40 -3.25 16 12 C -0.01 -0.25 6.71 -38.78 -0.26 -0.51 16 13 O -0.32 -6.29 10.09 -23.57 -0.24 -6.53 16 14 C 0.04 0.54 4.36 37.16 0.16 0.71 16 15 C 0.12 1.28 3.45 -26.73 -0.09 1.19 16 16 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 17 O -0.54 -6.74 13.17 -40.08 -0.53 -7.27 16 18 C 0.03 0.25 5.35 -3.82 -0.02 0.23 16 19 N -0.67 -4.56 6.37 -113.78 -0.72 -5.28 16 20 C 0.05 0.29 5.81 -3.83 -0.02 0.27 16 21 C 0.12 0.54 6.72 -4.04 -0.03 0.51 16 22 N -0.29 -2.09 3.44 -61.26 -0.21 -2.30 16 23 C -0.05 -0.28 11.57 -17.05 -0.20 -0.47 16 24 C -0.05 -0.38 12.05 -17.74 -0.21 -0.59 16 25 N -0.27 -3.04 12.41 30.24 0.38 -2.66 16 26 N -0.08 -0.88 12.91 60.35 0.78 -0.10 16 27 C -0.17 -3.73 8.96 -39.83 -0.36 -4.08 16 28 C -0.20 -4.84 9.74 -39.25 -0.38 -5.22 16 29 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 30 H 0.13 3.34 6.16 -52.49 -0.32 3.01 16 31 H 0.10 2.19 8.06 -52.49 -0.42 1.76 16 32 H 0.06 0.78 7.63 -51.93 -0.40 0.38 16 33 H 0.05 0.74 7.66 -51.93 -0.40 0.34 16 34 H 0.37 3.59 9.05 45.56 0.41 4.00 16 35 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.35 1.92 8.73 -39.29 -0.34 1.58 16 38 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 39 H 0.09 0.72 8.12 -51.93 -0.42 0.30 16 40 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.11 0.19 8.07 -51.93 -0.42 -0.23 16 42 H 0.19 0.25 8.06 -52.49 -0.42 -0.17 16 43 H 0.19 0.72 8.06 -52.49 -0.42 0.30 16 44 H 0.09 1.74 6.27 -52.48 -0.33 1.42 16 45 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 LS Contribution 384.14 15.07 5.79 5.79 Total: -1.00 -33.05 384.14 -7.92 -40.97 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -5.57 Total: 7.87 kcal Atomic # 6 Polarization: -20.90 SS G_CDS: -3.17 Total: -24.07 kcal Atomic # 7 Polarization: -31.12 SS G_CDS: 0.83 Total: -30.29 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: -0.77 Total: -13.79 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.03 Total: 13.52 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.05 -7.92 -40.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338418309.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.776 kcal (2) G-P(sol) polarization free energy of solvation -33.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds