Wall clock time and date at job start Sat Apr 11 2020 03:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30878 * 1 3 3 Si 1.86807 * 119.99803 * 2 1 4 4 H 1.48498 * 109.46956 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47162 * 299.99816 * 3 2 1 6 6 H 1.48501 * 109.46911 * 59.99936 * 3 2 1 7 7 C 1.39890 * 119.99969 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99807 * 197.94217 * 7 2 1 9 9 C 1.41213 * 120.00184 * 17.94467 * 7 2 1 10 10 C 1.40835 * 120.17732 * 24.54499 * 9 7 2 11 11 C 1.36436 * 119.80910 * 180.02562 * 10 9 7 12 12 C 1.39312 * 120.18824 * 359.97438 * 11 10 9 13 13 O 1.35672 * 119.81994 * 179.97438 * 12 11 10 14 14 C 1.42899 * 116.99863 * 179.97438 * 13 12 11 15 15 C 1.53001 * 109.47072 * 180.02562 * 14 13 12 16 16 H 1.09002 * 109.47334 * 305.00761 * 15 14 13 17 17 O 1.42900 * 109.47157 * 65.00431 * 15 14 13 18 18 C 1.53003 * 109.47397 * 185.00298 * 15 14 13 19 19 N 1.46900 * 109.47144 * 180.02562 * 18 15 14 20 20 C 1.46897 * 110.99915 * 179.97438 * 19 18 15 21 21 C 1.52998 * 109.47360 * 179.97438 * 20 19 18 22 22 N 1.46503 * 109.47345 * 180.02562 * 21 20 19 23 23 C 1.35310 * 125.86696 * 124.99933 * 22 21 20 24 24 C 1.35350 * 106.17296 * 180.02562 * 23 22 21 25 25 N 1.33774 * 106.49675 * 359.97438 * 24 23 22 26 26 N 1.28628 * 108.88462 * 0.02562 * 25 24 23 27 27 C 1.39315 * 120.36020 * 0.26260 * 12 11 10 28 28 C 1.36439 * 120.18830 * 359.48067 * 27 12 11 29 29 H 0.97003 * 120.00403 * 0.02562 * 1 2 3 30 30 H 1.08000 * 120.09690 * 359.97438 * 10 9 7 31 31 H 1.08001 * 119.90537 * 179.97438 * 11 10 9 32 32 H 1.09003 * 109.47177 * 60.00328 * 14 13 12 33 33 H 1.09001 * 109.47410 * 300.00063 * 14 13 12 34 34 H 0.96701 * 113.99981 * 59.99495 * 17 15 14 35 35 H 1.09000 * 109.47061 * 59.99894 * 18 15 14 36 36 H 1.08997 * 109.46837 * 299.99928 * 18 15 14 37 37 H 1.00899 * 110.99925 * 303.95626 * 19 18 15 38 38 H 1.09005 * 109.46764 * 60.00417 * 20 19 18 39 39 H 1.09002 * 109.47561 * 300.00383 * 20 19 18 40 40 H 1.08999 * 109.47163 * 60.00218 * 21 20 19 41 41 H 1.09002 * 109.47117 * 300.00680 * 21 20 19 42 42 H 1.07998 * 126.91778 * 0.02562 * 23 22 21 43 43 H 1.08000 * 126.75327 * 179.97438 * 24 23 22 44 44 H 1.08004 * 119.90391 * 179.72205 * 27 12 11 45 45 H 1.08000 * 120.09599 * 180.25646 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 3.7027 1.3465 -0.0006 5 1 1.8840 2.3965 -1.2125 6 1 1.8839 2.3965 1.2125 7 6 2.0082 -1.2115 0.0005 8 1 3.0489 -1.2341 0.2887 9 6 1.3537 -2.4049 -0.3757 10 6 0.2248 -2.3584 -1.2164 11 6 -0.4022 -3.5159 -1.5748 12 6 0.0718 -4.7415 -1.1120 13 8 -0.5577 -5.8880 -1.4727 14 6 -0.0205 -7.1106 -0.9641 15 6 -0.8558 -8.2863 -1.4750 16 1 -1.9023 -8.1292 -1.2136 17 8 -0.7285 -8.3794 -2.8953 18 6 -0.3585 -9.5827 -0.8324 19 7 -1.1601 -10.7115 -1.3234 20 6 -0.7096 -11.9760 -0.7268 21 6 -1.5666 -13.1256 -1.2605 22 7 -1.1177 -14.3867 -0.6651 23 6 -1.8936 -15.2638 0.0127 24 6 -1.0792 -16.2794 0.3833 25 7 0.1389 -15.9781 -0.0804 26 7 0.0826 -14.8504 -0.6966 27 6 1.1850 -4.7958 -0.2761 28 6 1.8266 -3.6479 0.0875 29 1 -0.4851 0.8400 -0.0004 30 1 -0.1442 -1.4090 -1.5757 31 1 -1.2683 -3.4821 -2.2190 32 1 -0.0455 -7.0931 0.1255 33 1 1.0097 -7.2233 -1.3021 34 1 0.1783 -8.5196 -3.2006 35 1 -0.4555 -9.5117 0.2510 36 1 0.6879 -9.7397 -1.0939 37 1 -2.1425 -10.5595 -1.1507 38 1 -0.8093 -11.9220 0.3573 39 1 0.3345 -12.1492 -0.9875 40 1 -1.4674 -13.1798 -2.3447 41 1 -2.6106 -12.9522 -0.9995 42 1 -2.9501 -15.1721 0.2170 43 1 -1.3580 -17.1599 0.9432 44 1 1.5434 -5.7497 0.0819 45 1 2.6919 -3.6921 0.7322 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338418309.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:07:04 Heat of formation + Delta-G solvation = 10.801768 kcal Electronic energy + Delta-G solvation = -26238.837574 eV Core-core repulsion = 22257.882380 eV Total energy + Delta-G solvation = -3980.955194 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.17657 -40.66065 -39.16432 -37.98768 -37.06511 -35.19648 -35.10038 -32.19205 -31.95549 -31.47637 -30.90972 -29.58376 -26.93677 -25.98366 -24.25983 -23.50973 -23.21686 -22.49457 -22.34564 -21.96306 -19.26361 -18.84873 -18.44440 -17.99672 -17.38800 -17.30225 -17.03245 -16.44342 -16.21773 -15.82513 -15.75664 -15.59528 -15.44497 -15.01298 -14.90520 -14.67085 -14.07664 -14.04421 -13.92395 -13.73983 -13.51743 -13.05640 -13.03233 -12.81814 -12.77025 -12.60105 -12.38992 -12.36350 -11.93287 -11.84652 -11.70242 -11.58966 -11.25445 -11.13405 -10.90811 -10.87526 -10.33291 -9.57062 -9.55377 -8.93245 -8.60409 -6.23479 0.67188 0.93932 1.01802 1.39712 1.39944 1.50467 1.54807 1.63642 2.22447 2.38259 2.71812 3.17270 3.45130 3.54337 3.69480 3.73865 3.82355 3.89562 3.97967 4.06283 4.18707 4.27753 4.28074 4.32423 4.34098 4.36579 4.46508 4.50166 4.62030 4.70626 4.86211 4.92032 5.01454 5.06793 5.21209 5.27796 5.28139 5.57110 5.62322 5.64355 5.76310 5.87577 6.05239 6.25762 6.29787 6.55993 6.79573 6.87907 6.94504 7.09498 7.53235 8.36327 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.038765 B = 0.001468 C = 0.001439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.134436 B =19069.428334 C =19449.276770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.034 3.966 3 Si 0.981 3.019 4 H -0.258 1.258 5 H -0.265 1.265 6 H -0.267 1.267 7 C -0.499 4.499 8 H 0.075 0.925 9 C 0.054 3.946 10 C -0.152 4.152 11 C -0.133 4.133 12 C 0.001 3.999 13 O -0.329 6.329 14 C 0.027 3.973 15 C 0.126 3.874 16 H 0.102 0.898 17 O -0.558 6.558 18 C 0.042 3.958 19 N -0.675 5.675 20 C 0.056 3.944 21 C 0.116 3.884 22 N -0.288 5.288 23 C -0.033 4.033 24 C -0.069 4.069 25 N -0.318 5.318 26 N -0.128 5.128 27 C -0.165 4.165 28 C -0.208 4.208 29 H 0.287 0.713 30 H 0.109 0.891 31 H 0.107 0.893 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.384 0.616 35 H 0.055 0.945 36 H 0.084 0.916 37 H 0.355 0.645 38 H 0.039 0.961 39 H 0.071 0.929 40 H 0.111 0.889 41 H 0.144 0.856 42 H 0.237 0.763 43 H 0.215 0.785 44 H 0.129 0.871 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.658 -24.679 0.551 25.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.180 4.180 3 Si 0.802 3.198 4 H -0.182 1.182 5 H -0.190 1.190 6 H -0.191 1.191 7 C -0.529 4.529 8 H 0.094 0.906 9 C 0.051 3.949 10 C -0.172 4.172 11 C -0.152 4.152 12 C -0.043 4.043 13 O -0.245 6.245 14 C -0.049 4.049 15 C 0.066 3.934 16 H 0.120 0.880 17 O -0.364 6.364 18 C -0.088 4.088 19 N -0.308 5.308 20 C -0.074 4.074 21 C -0.005 4.005 22 N -0.082 5.082 23 C -0.184 4.184 24 C -0.227 4.227 25 N -0.183 5.183 26 N -0.108 5.108 27 C -0.184 4.184 28 C -0.228 4.228 29 H 0.098 0.902 30 H 0.127 0.873 31 H 0.125 0.875 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.232 0.768 35 H 0.073 0.927 36 H 0.103 0.897 37 H 0.174 0.826 38 H 0.057 0.943 39 H 0.090 0.910 40 H 0.129 0.871 41 H 0.162 0.838 42 H 0.253 0.747 43 H 0.232 0.768 44 H 0.146 0.854 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -6.834 -24.282 -0.604 25.233 hybrid contribution -0.269 0.791 1.514 1.730 sum -7.103 -23.491 0.910 24.558 Atomic orbital electron populations 1.69890 1.08962 1.30421 1.36542 1.26722 0.95466 1.04445 0.91330 0.85177 0.79424 0.76333 0.78869 1.18193 1.18989 1.19137 1.19737 0.98350 0.92438 1.42384 0.90642 1.17966 0.92690 0.93367 0.90833 1.20898 0.99289 0.96430 1.00545 1.20010 1.01245 0.90661 1.03309 1.18680 0.96616 0.85557 1.03480 1.85872 1.54704 1.12691 1.71218 1.23516 0.98422 0.83772 0.99226 1.21759 1.00170 0.89993 0.81496 0.88029 1.86593 1.34207 1.95203 1.20429 1.22416 0.99014 0.89393 0.97965 1.60115 1.08561 1.00412 1.61721 1.22006 0.99989 0.88678 0.96754 1.22245 1.00997 0.76999 1.00209 1.47701 1.06758 1.18039 1.35713 1.24474 1.02092 0.91446 1.00394 1.24279 0.89034 1.03316 1.06052 1.75082 1.24162 1.07121 1.11949 1.78282 1.03720 1.07805 1.20959 1.20698 0.97343 0.98635 1.01722 1.20801 1.03634 0.92622 1.05751 0.90200 0.87265 0.87456 0.91481 0.91770 0.76769 0.92653 0.89715 0.82562 0.94310 0.91009 0.87066 0.83809 0.74699 0.76786 0.85359 0.87706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.83 10.96 21.82 0.24 -43.59 16 2 C 0.03 1.74 5.13 85.24 0.44 2.17 16 3 Si 0.98 38.35 29.60 68.60 2.03 40.38 16 4 H -0.26 -9.87 7.11 99.48 0.71 -9.17 16 5 H -0.27 -9.98 7.11 99.48 0.71 -9.28 16 6 H -0.27 -9.96 7.11 99.48 0.71 -9.26 16 7 C -0.50 -27.06 9.04 23.40 0.21 -26.85 16 8 H 0.08 3.94 7.91 -2.91 -0.02 3.91 16 9 C 0.05 2.92 5.57 -21.28 -0.12 2.80 16 10 C -0.15 -8.17 8.64 22.48 0.19 -7.97 16 11 C -0.13 -6.52 9.92 22.11 0.22 -6.30 16 12 C 0.00 0.03 6.71 22.79 0.15 0.18 16 13 O -0.33 -12.55 10.09 -85.26 -0.86 -13.41 16 14 C 0.03 0.71 4.36 71.98 0.31 1.02 16 15 C 0.13 2.50 3.45 30.60 0.11 2.61 16 16 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 17 O -0.56 -12.89 13.17 -144.35 -1.90 -14.79 16 18 C 0.04 0.57 5.35 86.30 0.46 1.03 16 19 N -0.68 -7.48 6.37 -513.89 -3.27 -10.75 16 20 C 0.06 0.57 5.81 86.30 0.50 1.08 16 21 C 0.12 0.78 6.72 86.38 0.58 1.36 16 22 N -0.29 -3.65 3.44 -347.73 -1.20 -4.85 16 23 C -0.03 -0.26 11.57 83.49 0.97 0.71 16 24 C -0.07 -0.89 12.05 83.73 1.01 0.12 16 25 N -0.32 -7.10 12.41 -58.25 -0.72 -7.82 16 26 N -0.13 -2.76 12.91 37.02 0.48 -2.28 16 27 C -0.17 -7.12 8.96 22.11 0.20 -6.92 16 28 C -0.21 -10.14 9.74 22.48 0.22 -9.93 16 29 H 0.29 13.65 8.30 -92.71 -0.77 12.88 16 30 H 0.11 6.10 6.16 -2.91 -0.02 6.08 16 31 H 0.11 4.88 8.06 -2.91 -0.02 4.85 16 32 H 0.07 1.65 7.63 -2.39 -0.02 1.63 16 33 H 0.06 1.58 7.66 -2.39 -0.02 1.56 16 34 H 0.38 6.73 9.05 -74.06 -0.67 6.06 16 35 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.35 2.87 8.73 -89.69 -0.78 2.08 16 38 H 0.04 0.41 8.14 -2.38 -0.02 0.39 16 39 H 0.07 1.07 8.12 -2.39 -0.02 1.05 16 40 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.14 -0.11 8.07 -2.39 -0.02 -0.13 16 42 H 0.24 -0.57 8.06 -2.91 -0.02 -0.60 16 43 H 0.22 1.22 8.06 -2.91 -0.02 1.19 16 44 H 0.13 4.49 6.27 -2.91 -0.02 4.47 16 45 H 0.10 4.75 8.06 -2.91 -0.02 4.72 16 Total: -1.00 -74.73 384.14 -0.18 -74.91 By element: Atomic # 1 Polarization: 27.53 SS G_CDS: -0.43 Total: 27.10 kcal Atomic # 6 Polarization: -50.34 SS G_CDS: 5.45 Total: -44.89 kcal Atomic # 7 Polarization: -64.82 SS G_CDS: -4.47 Total: -69.30 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: -2.76 Total: -28.20 kcal Atomic # 14 Polarization: 38.35 SS G_CDS: 2.03 Total: 40.38 kcal Total: -74.73 -0.18 -74.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338418309.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.707 kcal (2) G-P(sol) polarization free energy of solvation -74.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds