Wall clock time and date at job start Sat Apr 11 2020 03:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30876 * 1 3 3 Si 1.86800 * 120.00127 * 2 1 4 4 H 1.48497 * 109.47356 * 270.00259 * 3 2 1 5 5 H 1.48501 * 109.46864 * 30.00569 * 3 2 1 6 6 H 1.48502 * 109.46708 * 150.00105 * 3 2 1 7 7 C 1.39899 * 119.99983 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00041 * 197.93301 * 7 2 1 9 9 C 1.41213 * 119.99821 * 17.93140 * 7 2 1 10 10 C 1.40829 * 120.18155 * 24.54537 * 9 7 2 11 11 C 1.36438 * 119.81327 * 180.02562 * 10 9 7 12 12 C 1.39316 * 120.18367 * 0.02562 * 11 10 9 13 13 O 1.35678 * 119.81611 * 179.97438 * 12 11 10 14 14 C 1.42897 * 116.99746 * 179.97438 * 13 12 11 15 15 C 1.53003 * 109.47399 * 180.02562 * 14 13 12 16 16 H 1.09001 * 109.46949 * 54.99320 * 15 14 13 17 17 O 1.42902 * 109.46586 * 295.00384 * 15 14 13 18 18 C 1.52990 * 109.47541 * 174.99958 * 15 14 13 19 19 N 1.46898 * 109.47198 * 184.99841 * 18 15 14 20 20 C 1.46909 * 111.00125 * 180.02562 * 19 18 15 21 21 C 1.52997 * 109.46940 * 179.97438 * 20 19 18 22 22 N 1.46498 * 109.46820 * 179.97438 * 21 20 19 23 23 C 1.35317 * 125.86899 * 124.71972 * 22 21 20 24 24 C 1.35353 * 106.17315 * 179.90510 * 23 22 21 25 25 N 1.33765 * 106.49893 * 0.35062 * 24 23 22 26 26 N 1.28634 * 108.88628 * 359.77207 * 25 24 23 27 27 C 1.39311 * 120.36497 * 0.25392 * 12 11 10 28 28 C 1.36437 * 120.18288 * 359.48231 * 27 12 11 29 29 H 0.96995 * 120.00142 * 359.97438 * 1 2 3 30 30 H 1.07998 * 120.09413 * 0.02562 * 10 9 7 31 31 H 1.08002 * 119.91327 * 179.97438 * 11 10 9 32 32 H 1.08998 * 109.47400 * 59.99975 * 14 13 12 33 33 H 1.09000 * 109.47347 * 300.00315 * 14 13 12 34 34 H 0.96698 * 113.99962 * 299.98888 * 17 15 14 35 35 H 1.09006 * 109.47160 * 64.99840 * 18 15 14 36 36 H 1.08998 * 109.47300 * 305.00156 * 18 15 14 37 37 H 1.00898 * 111.00152 * 303.95489 * 19 18 15 38 38 H 1.08995 * 109.46631 * 299.99960 * 20 19 18 39 39 H 1.08998 * 109.46769 * 60.00053 * 20 19 18 40 40 H 1.08997 * 109.47818 * 299.99971 * 21 20 19 41 41 H 1.08998 * 109.47256 * 60.00461 * 21 20 19 42 42 H 1.07992 * 126.91184 * 0.02562 * 23 22 21 43 43 H 1.08002 * 126.74720 * 180.12363 * 24 23 22 44 44 H 1.08001 * 119.90668 * 179.72160 * 27 12 11 45 45 H 1.08005 * 120.09466 * 180.25225 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.4903 2.0465 -1.4000 5 1 1.4403 2.6526 0.7002 6 1 3.5404 1.4400 0.7000 7 6 2.0082 -1.2116 -0.0005 8 1 3.0489 -1.2344 0.2874 9 6 1.3536 -2.4046 -0.3776 10 6 0.2245 -2.3575 -1.2180 11 6 -0.4026 -3.5148 -1.5771 12 6 0.0709 -4.7406 -1.1145 13 8 -0.5588 -5.8868 -1.4760 14 6 -0.0222 -7.1098 -0.9675 15 6 -0.8575 -8.2851 -1.4793 16 1 -0.9048 -8.2504 -2.5677 17 8 -2.1789 -8.1997 -0.9422 18 6 -0.2116 -9.6000 -1.0385 19 7 -0.9447 -10.7278 -1.6290 20 6 -0.3517 -12.0101 -1.2261 21 6 -1.1408 -13.1580 -1.8588 22 7 -0.5491 -14.4367 -1.4575 23 6 -1.2012 -15.4576 -0.8546 24 6 -0.2825 -16.4339 -0.6679 25 7 0.8732 -15.9656 -1.1521 26 7 0.6817 -14.7800 -1.6127 27 6 1.1836 -4.7956 -0.2782 28 6 1.8254 -3.6480 0.0860 29 1 -0.4850 0.8400 0.0004 30 1 -0.1440 -1.4079 -1.5771 31 1 -1.2688 -3.4805 -2.2212 32 1 -0.0477 -7.0926 0.1220 33 1 1.0081 -7.2226 -1.3050 34 1 -2.2132 -8.2247 0.0239 35 1 -0.2445 -9.6746 0.0485 36 1 0.8254 -9.6256 -1.3731 37 1 -1.9232 -10.6900 -1.3860 38 1 0.6844 -12.0525 -1.5618 39 1 -0.3860 -12.1010 -0.1405 40 1 -2.1769 -13.1154 -1.5228 41 1 -1.1069 -13.0673 -2.9444 42 1 -2.2452 -15.4882 -0.5797 43 1 -0.4489 -17.3995 -0.2136 44 1 1.5416 -5.7496 0.0797 45 1 2.6904 -3.6926 0.7312 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338418311.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:07:07 Heat of formation + Delta-G solvation = 34.033426 kcal Electronic energy + Delta-G solvation = -26240.218042 eV Core-core repulsion = 22260.270248 eV Total energy + Delta-G solvation = -3979.947793 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.64744 -39.22738 -38.13500 -36.78522 -36.02719 -34.50021 -33.34553 -31.47030 -31.19526 -29.88795 -29.17574 -28.65725 -25.63245 -24.60618 -23.58446 -22.95304 -22.16898 -21.60811 -20.72041 -20.60728 -18.13775 -17.49896 -17.38770 -16.96664 -16.61989 -16.40722 -15.74248 -15.58179 -15.29035 -15.19711 -14.56362 -14.49021 -14.13833 -14.01647 -13.91356 -13.40659 -13.16940 -12.83782 -12.52540 -12.28176 -12.21119 -12.16388 -11.88208 -11.81574 -11.43361 -11.31432 -11.17836 -11.05144 -10.86113 -10.63918 -10.57700 -10.14697 -10.00083 -9.84437 -9.82369 -9.36224 -9.06721 -9.04887 -7.67263 -7.06312 -6.74632 -4.28098 1.16006 1.80861 2.18413 2.75495 2.92314 3.07365 3.10614 3.19491 3.36005 3.82064 3.93409 4.01598 4.13408 4.21256 4.28375 4.54584 4.58799 4.59320 4.78185 4.79970 4.80751 4.95032 5.04510 5.13820 5.25367 5.31892 5.36052 5.55503 5.64398 5.72762 5.92985 6.02340 6.07575 6.19874 6.31268 6.69525 6.78937 6.95095 7.08429 7.16012 7.42297 7.49879 7.53474 7.76012 7.98174 8.09576 8.17838 8.41915 8.62568 8.87541 8.95956 10.19844 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.039638 B = 0.001471 C = 0.001434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.218082 B =19028.561229 C =19515.429726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.075 3.925 3 Si 0.908 3.092 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.464 4.464 8 H 0.077 0.923 9 C 0.088 3.912 10 C -0.133 4.133 11 C -0.118 4.118 12 C -0.011 4.011 13 O -0.317 6.317 14 C 0.039 3.961 15 C 0.112 3.888 16 H 0.117 0.883 17 O -0.551 6.551 18 C 0.034 3.966 19 N -0.679 5.679 20 C 0.047 3.953 21 C 0.116 3.884 22 N -0.289 5.289 23 C -0.051 4.051 24 C -0.053 4.053 25 N -0.273 5.273 26 N -0.082 5.082 27 C -0.168 4.168 28 C -0.199 4.199 29 H 0.280 0.720 30 H 0.126 0.874 31 H 0.098 0.902 32 H 0.052 0.948 33 H 0.059 0.941 34 H 0.370 0.630 35 H 0.039 0.961 36 H 0.089 0.911 37 H 0.350 0.650 38 H 0.093 0.907 39 H 0.039 0.961 40 H 0.107 0.893 41 H 0.112 0.888 42 H 0.191 0.809 43 H 0.190 0.810 44 H 0.092 0.908 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.086 -24.054 -0.328 24.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.142 4.142 3 Si 0.732 3.268 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.494 4.494 8 H 0.095 0.905 9 C 0.086 3.914 10 C -0.153 4.153 11 C -0.137 4.137 12 C -0.054 4.054 13 O -0.232 6.232 14 C -0.038 4.038 15 C 0.052 3.948 16 H 0.135 0.865 17 O -0.355 6.355 18 C -0.096 4.096 19 N -0.311 5.311 20 C -0.083 4.083 21 C -0.006 4.006 22 N -0.083 5.083 23 C -0.202 4.202 24 C -0.210 4.210 25 N -0.139 5.139 26 N -0.062 5.062 27 C -0.187 4.187 28 C -0.218 4.218 29 H 0.091 0.909 30 H 0.144 0.856 31 H 0.116 0.884 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.217 0.783 35 H 0.057 0.943 36 H 0.107 0.893 37 H 0.169 0.831 38 H 0.111 0.889 39 H 0.057 0.943 40 H 0.125 0.875 41 H 0.130 0.870 42 H 0.208 0.792 43 H 0.207 0.793 44 H 0.110 0.890 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.886 -23.390 -2.194 23.995 hybrid contribution -0.727 0.338 2.247 2.386 sum -5.613 -23.052 0.053 23.725 Atomic orbital electron populations 1.69829 1.07515 1.29174 1.35907 1.25879 0.94717 1.01232 0.92346 0.86322 0.80449 0.80688 0.79303 1.19291 1.20369 1.18708 1.19476 0.98123 0.91256 1.40523 0.90526 1.17604 0.91858 0.92117 0.89851 1.20983 0.98479 0.96321 0.99485 1.19842 1.00777 0.90201 1.02878 1.18613 0.97024 0.84804 1.04945 1.85882 1.54590 1.11999 1.70758 1.23059 0.97443 0.85178 0.98161 1.21960 0.82192 0.89987 1.00618 0.86513 1.86648 1.27099 1.96449 1.25346 1.22559 0.99390 0.90522 0.97116 1.60232 1.07503 1.00391 1.63006 1.22158 1.00309 0.88060 0.97778 1.22072 0.97448 0.77949 1.03083 1.47475 1.07899 1.14230 1.38713 1.23746 1.01873 0.89681 1.04878 1.23667 0.89451 1.01917 1.05985 1.75154 1.23935 1.02381 1.12405 1.78350 0.98237 1.09795 1.19789 1.20388 0.98014 0.97717 1.02552 1.20556 1.03129 0.92539 1.05622 0.90888 0.85649 0.88416 0.93031 0.92248 0.78312 0.94268 0.89279 0.83054 0.88853 0.94306 0.87502 0.86958 0.79218 0.79304 0.88995 0.88769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.57 10.96 55.55 0.61 -19.96 16 2 C 0.08 1.88 5.13 -17.34 -0.09 1.79 16 3 Si 0.91 18.59 29.60 -169.99 -5.03 13.56 16 4 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 5 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 6 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 7 C -0.46 -12.25 9.04 -37.83 -0.34 -12.60 16 8 H 0.08 1.95 7.91 -52.49 -0.42 1.53 16 9 C 0.09 2.34 5.57 -106.81 -0.60 1.74 16 10 C -0.13 -3.47 8.64 -39.25 -0.34 -3.81 16 11 C -0.12 -2.85 9.92 -39.83 -0.40 -3.25 16 12 C -0.01 -0.25 6.71 -38.78 -0.26 -0.51 16 13 O -0.32 -6.30 10.09 -23.60 -0.24 -6.54 16 14 C 0.04 0.56 4.36 37.16 0.16 0.72 16 15 C 0.11 1.24 3.49 -26.73 -0.09 1.15 16 16 H 0.12 1.44 8.14 -51.93 -0.42 1.02 16 17 O -0.55 -6.34 12.82 -40.09 -0.51 -6.85 16 18 C 0.03 0.27 5.36 -3.83 -0.02 0.25 16 19 N -0.68 -4.68 6.50 -113.78 -0.74 -5.42 16 20 C 0.05 0.29 5.81 -3.82 -0.02 0.27 16 21 C 0.12 0.54 6.72 -4.04 -0.03 0.51 16 22 N -0.29 -2.09 3.44 -61.27 -0.21 -2.30 16 23 C -0.05 -0.28 11.57 -17.04 -0.20 -0.47 16 24 C -0.05 -0.38 12.05 -17.74 -0.21 -0.59 16 25 N -0.27 -3.04 12.41 30.23 0.38 -2.66 16 26 N -0.08 -0.88 12.91 60.35 0.78 -0.10 16 27 C -0.17 -3.73 8.96 -39.83 -0.36 -4.09 16 28 C -0.20 -4.84 9.74 -39.25 -0.38 -5.22 16 29 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 30 H 0.13 3.34 6.16 -52.49 -0.32 3.01 16 31 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 32 H 0.05 0.71 7.63 -51.93 -0.40 0.31 16 33 H 0.06 0.82 7.66 -51.93 -0.40 0.42 16 34 H 0.37 3.05 9.05 45.56 0.41 3.46 16 35 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.35 2.11 8.29 -39.29 -0.33 1.79 16 38 H 0.09 0.73 8.12 -51.93 -0.42 0.31 16 39 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 40 H 0.11 0.20 8.07 -51.93 -0.42 -0.22 16 41 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.19 0.24 8.06 -52.49 -0.42 -0.18 16 43 H 0.19 0.71 8.06 -52.49 -0.42 0.29 16 44 H 0.09 1.74 6.27 -52.49 -0.33 1.42 16 45 H 0.09 2.15 8.06 -52.48 -0.42 1.72 16 LS Contribution 383.52 15.07 5.78 5.78 Total: -1.00 -32.83 383.52 -7.92 -40.75 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -5.55 Total: 7.84 kcal Atomic # 6 Polarization: -20.93 SS G_CDS: -3.17 Total: -24.10 kcal Atomic # 7 Polarization: -31.26 SS G_CDS: 0.81 Total: -30.44 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: -0.75 Total: -13.39 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.56 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.83 -7.92 -40.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338418311.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.785 kcal (2) G-P(sol) polarization free energy of solvation -32.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds