Wall clock time and date at job start Sat Apr 11 2020 03:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30876 * 1 3 3 Si 1.86800 * 120.00127 * 2 1 4 4 H 1.48497 * 109.47356 * 270.00259 * 3 2 1 5 5 H 1.48501 * 109.46864 * 30.00569 * 3 2 1 6 6 H 1.48502 * 109.46708 * 150.00105 * 3 2 1 7 7 C 1.39899 * 119.99983 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00041 * 197.93301 * 7 2 1 9 9 C 1.41213 * 119.99821 * 17.93140 * 7 2 1 10 10 C 1.40829 * 120.18155 * 24.54537 * 9 7 2 11 11 C 1.36438 * 119.81327 * 180.02562 * 10 9 7 12 12 C 1.39316 * 120.18367 * 0.02562 * 11 10 9 13 13 O 1.35678 * 119.81611 * 179.97438 * 12 11 10 14 14 C 1.42897 * 116.99746 * 179.97438 * 13 12 11 15 15 C 1.53003 * 109.47399 * 180.02562 * 14 13 12 16 16 H 1.09001 * 109.46949 * 54.99320 * 15 14 13 17 17 O 1.42902 * 109.46586 * 295.00384 * 15 14 13 18 18 C 1.52990 * 109.47541 * 174.99958 * 15 14 13 19 19 N 1.46898 * 109.47198 * 184.99841 * 18 15 14 20 20 C 1.46909 * 111.00125 * 180.02562 * 19 18 15 21 21 C 1.52997 * 109.46940 * 179.97438 * 20 19 18 22 22 N 1.46498 * 109.46820 * 179.97438 * 21 20 19 23 23 C 1.35317 * 125.86899 * 124.71972 * 22 21 20 24 24 C 1.35353 * 106.17315 * 179.90510 * 23 22 21 25 25 N 1.33765 * 106.49893 * 0.35062 * 24 23 22 26 26 N 1.28634 * 108.88628 * 359.77207 * 25 24 23 27 27 C 1.39311 * 120.36497 * 0.25392 * 12 11 10 28 28 C 1.36437 * 120.18288 * 359.48231 * 27 12 11 29 29 H 0.96995 * 120.00142 * 359.97438 * 1 2 3 30 30 H 1.07998 * 120.09413 * 0.02562 * 10 9 7 31 31 H 1.08002 * 119.91327 * 179.97438 * 11 10 9 32 32 H 1.08998 * 109.47400 * 59.99975 * 14 13 12 33 33 H 1.09000 * 109.47347 * 300.00315 * 14 13 12 34 34 H 0.96698 * 113.99962 * 299.98888 * 17 15 14 35 35 H 1.09006 * 109.47160 * 64.99840 * 18 15 14 36 36 H 1.08998 * 109.47300 * 305.00156 * 18 15 14 37 37 H 1.00898 * 111.00152 * 303.95489 * 19 18 15 38 38 H 1.08995 * 109.46631 * 299.99960 * 20 19 18 39 39 H 1.08998 * 109.46769 * 60.00053 * 20 19 18 40 40 H 1.08997 * 109.47818 * 299.99971 * 21 20 19 41 41 H 1.08998 * 109.47256 * 60.00461 * 21 20 19 42 42 H 1.07992 * 126.91184 * 0.02562 * 23 22 21 43 43 H 1.08002 * 126.74720 * 180.12363 * 24 23 22 44 44 H 1.08001 * 119.90668 * 179.72160 * 27 12 11 45 45 H 1.08005 * 120.09466 * 180.25225 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.4903 2.0465 -1.4000 5 1 1.4403 2.6526 0.7002 6 1 3.5404 1.4400 0.7000 7 6 2.0082 -1.2116 -0.0005 8 1 3.0489 -1.2344 0.2874 9 6 1.3536 -2.4046 -0.3776 10 6 0.2245 -2.3575 -1.2180 11 6 -0.4026 -3.5148 -1.5771 12 6 0.0709 -4.7406 -1.1145 13 8 -0.5588 -5.8868 -1.4760 14 6 -0.0222 -7.1098 -0.9675 15 6 -0.8575 -8.2851 -1.4793 16 1 -0.9048 -8.2504 -2.5677 17 8 -2.1789 -8.1997 -0.9422 18 6 -0.2116 -9.6000 -1.0385 19 7 -0.9447 -10.7278 -1.6290 20 6 -0.3517 -12.0101 -1.2261 21 6 -1.1408 -13.1580 -1.8588 22 7 -0.5491 -14.4367 -1.4575 23 6 -1.2012 -15.4576 -0.8546 24 6 -0.2825 -16.4339 -0.6679 25 7 0.8732 -15.9656 -1.1521 26 7 0.6817 -14.7800 -1.6127 27 6 1.1836 -4.7956 -0.2782 28 6 1.8254 -3.6480 0.0860 29 1 -0.4850 0.8400 0.0004 30 1 -0.1440 -1.4079 -1.5771 31 1 -1.2688 -3.4805 -2.2212 32 1 -0.0477 -7.0926 0.1220 33 1 1.0081 -7.2226 -1.3050 34 1 -2.2132 -8.2247 0.0239 35 1 -0.2445 -9.6746 0.0485 36 1 0.8254 -9.6256 -1.3731 37 1 -1.9232 -10.6900 -1.3860 38 1 0.6844 -12.0525 -1.5618 39 1 -0.3860 -12.1010 -0.1405 40 1 -2.1769 -13.1154 -1.5228 41 1 -1.1069 -13.0673 -2.9444 42 1 -2.2452 -15.4882 -0.5797 43 1 -0.4489 -17.3995 -0.2136 44 1 1.5416 -5.7496 0.0797 45 1 2.6904 -3.6926 0.7312 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338418311.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:07:07 Heat of formation + Delta-G solvation = 9.209103 kcal Electronic energy + Delta-G solvation = -26241.294505 eV Core-core repulsion = 22260.270248 eV Total energy + Delta-G solvation = -3981.024257 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.17670 -40.67300 -39.23638 -37.99765 -37.09153 -35.19693 -35.09187 -32.22329 -31.95620 -31.48435 -30.91018 -29.60951 -26.94001 -25.98785 -24.27289 -23.51248 -23.18366 -22.48510 -22.34541 -21.98840 -19.26307 -18.87008 -18.44992 -17.89388 -17.58345 -17.32629 -17.03550 -16.52956 -16.20456 -15.85256 -15.75897 -15.60505 -15.34713 -15.09731 -14.84266 -14.67755 -14.07680 -13.97741 -13.93511 -13.85827 -13.48156 -13.09252 -13.03269 -12.81092 -12.77148 -12.61756 -12.39503 -12.38253 -11.93279 -11.84741 -11.71198 -11.59451 -11.27937 -11.13528 -10.97846 -10.88180 -10.33314 -9.60203 -9.56915 -8.93314 -8.60156 -6.23536 0.67028 0.94286 1.01926 1.39645 1.39777 1.52504 1.52649 1.63692 2.22465 2.38090 2.72037 3.17766 3.44088 3.46443 3.69445 3.72868 3.80733 3.96493 3.97998 4.01021 4.17871 4.27596 4.28106 4.31379 4.34071 4.35198 4.46123 4.49741 4.66488 4.67981 4.86099 4.91902 5.02304 5.07477 5.21214 5.27863 5.28141 5.57345 5.62255 5.64263 5.76167 5.87582 6.05188 6.25811 6.31333 6.55907 6.76406 6.81751 6.94498 7.09489 7.53198 8.36422 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.039638 B = 0.001471 C = 0.001434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.218082 B =19028.561229 C =19515.429726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.034 3.966 3 Si 0.982 3.018 4 H -0.263 1.263 5 H -0.269 1.269 6 H -0.259 1.259 7 C -0.500 4.500 8 H 0.076 0.924 9 C 0.054 3.946 10 C -0.152 4.152 11 C -0.134 4.134 12 C 0.000 4.000 13 O -0.329 6.329 14 C 0.028 3.972 15 C 0.125 3.875 16 H 0.103 0.897 17 O -0.564 6.564 18 C 0.043 3.957 19 N -0.681 5.681 20 C 0.055 3.945 21 C 0.116 3.884 22 N -0.288 5.288 23 C -0.032 4.032 24 C -0.069 4.069 25 N -0.318 5.318 26 N -0.129 5.129 27 C -0.165 4.165 28 C -0.208 4.208 29 H 0.288 0.712 30 H 0.109 0.891 31 H 0.107 0.893 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.385 0.615 35 H 0.054 0.946 36 H 0.087 0.913 37 H 0.358 0.642 38 H 0.071 0.929 39 H 0.040 0.960 40 H 0.144 0.856 41 H 0.111 0.889 42 H 0.237 0.763 43 H 0.216 0.784 44 H 0.129 0.871 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.129 -25.503 0.437 26.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.180 4.180 3 Si 0.803 3.197 4 H -0.188 1.188 5 H -0.193 1.193 6 H -0.182 1.182 7 C -0.530 4.530 8 H 0.094 0.906 9 C 0.052 3.948 10 C -0.172 4.172 11 C -0.152 4.152 12 C -0.044 4.044 13 O -0.245 6.245 14 C -0.049 4.049 15 C 0.066 3.934 16 H 0.121 0.879 17 O -0.371 6.371 18 C -0.086 4.086 19 N -0.314 5.314 20 C -0.075 4.075 21 C -0.005 4.005 22 N -0.082 5.082 23 C -0.184 4.184 24 C -0.227 4.227 25 N -0.183 5.183 26 N -0.108 5.108 27 C -0.184 4.184 28 C -0.228 4.228 29 H 0.098 0.902 30 H 0.127 0.873 31 H 0.125 0.875 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.234 0.766 35 H 0.072 0.928 36 H 0.106 0.894 37 H 0.178 0.822 38 H 0.090 0.910 39 H 0.059 0.941 40 H 0.162 0.838 41 H 0.129 0.871 42 H 0.253 0.747 43 H 0.232 0.768 44 H 0.147 0.853 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -5.923 -24.862 -1.429 25.597 hybrid contribution -0.536 0.573 2.019 2.166 sum -6.458 -24.288 0.590 25.139 Atomic orbital electron populations 1.69884 1.08961 1.30480 1.36454 1.26724 0.95468 1.04440 0.91329 0.85210 0.79054 0.76027 0.79443 1.18804 1.19336 1.18225 1.19721 0.98367 0.92458 1.42444 0.90623 1.17962 0.92688 0.93367 0.90813 1.20897 0.99298 0.96421 1.00547 1.20012 1.01202 0.90667 1.03358 1.18683 0.96548 0.85560 1.03560 1.85875 1.54839 1.12727 1.71077 1.23496 0.98595 0.83711 0.99057 1.21786 0.81860 0.90035 0.99766 0.87924 1.86617 1.27147 1.96463 1.26892 1.22390 0.99016 0.89292 0.97935 1.60152 1.07907 1.00259 1.63117 1.22010 0.99422 0.88207 0.97840 1.22247 0.98741 0.76447 1.03059 1.47699 1.07280 1.15126 1.38105 1.24479 1.03342 0.88124 1.02430 1.24280 0.88814 1.03543 1.06027 1.75081 1.26287 1.03115 1.13823 1.78291 1.00245 1.10290 1.21979 1.20696 0.97315 0.98647 1.01726 1.20803 1.03643 0.92617 1.05735 0.90192 0.87269 0.87473 0.91758 0.91361 0.76581 0.92820 0.89414 0.82160 0.91018 0.94148 0.83777 0.87070 0.74677 0.76768 0.85332 0.87694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.89 10.96 21.82 0.24 -43.65 16 2 C 0.03 1.74 5.13 85.24 0.44 2.18 16 3 Si 0.98 38.40 29.60 68.60 2.03 40.43 16 4 H -0.26 -10.02 7.11 99.48 0.71 -9.32 16 5 H -0.27 -9.99 7.11 99.48 0.71 -9.28 16 6 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 7 C -0.50 -27.12 9.04 23.40 0.21 -26.91 16 8 H 0.08 3.94 7.91 -2.91 -0.02 3.92 16 9 C 0.05 2.93 5.57 -21.28 -0.12 2.82 16 10 C -0.15 -8.18 8.64 22.48 0.19 -7.99 16 11 C -0.13 -6.55 9.92 22.11 0.22 -6.33 16 12 C 0.00 0.02 6.71 22.79 0.15 0.17 16 13 O -0.33 -12.62 10.09 -85.32 -0.86 -13.48 16 14 C 0.03 0.73 4.36 71.98 0.31 1.05 16 15 C 0.13 2.51 3.49 30.59 0.11 2.62 16 16 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 17 O -0.56 -11.64 12.82 -144.33 -1.85 -13.49 16 18 C 0.04 0.60 5.36 86.30 0.46 1.06 16 19 N -0.68 -7.76 6.50 -513.90 -3.34 -11.11 16 20 C 0.06 0.58 5.81 86.30 0.50 1.08 16 21 C 0.12 0.79 6.72 86.38 0.58 1.37 16 22 N -0.29 -3.65 3.44 -347.75 -1.20 -4.85 16 23 C -0.03 -0.25 11.57 83.49 0.97 0.71 16 24 C -0.07 -0.88 12.05 83.73 1.01 0.13 16 25 N -0.32 -7.10 12.41 -58.26 -0.72 -7.82 16 26 N -0.13 -2.78 12.91 37.02 0.48 -2.30 16 27 C -0.17 -7.12 8.96 22.11 0.20 -6.93 16 28 C -0.21 -10.15 9.74 22.48 0.22 -9.93 16 29 H 0.29 13.72 8.30 -92.71 -0.77 12.95 16 30 H 0.11 6.10 6.16 -2.91 -0.02 6.09 16 31 H 0.11 4.89 8.06 -2.91 -0.02 4.87 16 32 H 0.06 1.56 7.63 -2.39 -0.02 1.54 16 33 H 0.07 1.71 7.66 -2.39 -0.02 1.69 16 34 H 0.39 5.26 9.05 -74.06 -0.67 4.59 16 35 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 36 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.36 3.22 8.29 -89.70 -0.74 2.48 16 38 H 0.07 1.08 8.12 -2.39 -0.02 1.06 16 39 H 0.04 0.42 8.14 -2.39 -0.02 0.40 16 40 H 0.14 -0.10 8.07 -2.39 -0.02 -0.12 16 41 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.24 -0.60 8.06 -2.91 -0.02 -0.63 16 43 H 0.22 1.20 8.06 -2.91 -0.02 1.17 16 44 H 0.13 4.50 6.27 -2.91 -0.02 4.48 16 45 H 0.10 4.75 8.06 -2.91 -0.02 4.73 16 Total: -1.00 -74.49 383.52 -0.16 -74.65 By element: Atomic # 1 Polarization: 26.91 SS G_CDS: -0.39 Total: 26.52 kcal Atomic # 6 Polarization: -50.35 SS G_CDS: 5.45 Total: -44.90 kcal Atomic # 7 Polarization: -65.18 SS G_CDS: -4.54 Total: -69.73 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: -2.71 Total: -26.98 kcal Atomic # 14 Polarization: 38.40 SS G_CDS: 2.03 Total: 40.43 kcal Total: -74.49 -0.16 -74.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338418311.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.855 kcal (2) G-P(sol) polarization free energy of solvation -74.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds