Wall clock time and date at job start Sat Apr 11 2020 03:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86800 * 120.00052 * 2 1 4 4 H 1.48500 * 109.47150 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47129 * 299.99981 * 3 2 1 6 6 H 1.48504 * 109.47045 * 59.99488 * 3 2 1 7 7 C 1.38812 * 119.99863 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99913 * 197.36408 * 7 2 1 9 9 N 1.36939 * 120.00123 * 17.37146 * 7 2 1 10 10 C 1.46919 * 120.63139 * 207.66750 * 9 7 2 11 11 C 1.53195 * 108.77831 * 233.62583 * 10 9 7 12 12 C 1.53035 * 109.30982 * 305.36620 * 11 10 9 13 13 N 1.46505 * 109.46071 * 181.38131 * 12 11 10 14 14 S 1.65590 * 120.00270 * 144.99576 * 13 12 11 15 15 O 1.42103 * 104.28039 * 308.93255 * 14 13 12 16 16 O 1.42105 * 104.28115 * 181.07394 * 14 13 12 17 17 C 1.81400 * 104.44901 * 65.00522 * 14 13 12 18 18 C 1.52997 * 109.47435 * 180.02562 * 17 14 13 19 19 H 1.09003 * 109.52290 * 304.87272 * 18 17 14 20 20 C 1.53180 * 109.52289 * 184.68748 * 18 17 14 21 21 C 1.53180 * 109.03389 * 183.11364 * 20 18 17 22 22 C 1.53088 * 109.16466 * 56.97835 * 21 20 18 23 23 O 1.42902 * 109.41685 * 302.38957 * 22 21 20 24 24 C 1.42904 * 114.09597 * 61.16109 * 23 22 21 25 25 C 1.53040 * 109.54166 * 61.36204 * 12 11 10 26 26 C 1.46929 * 120.63008 * 27.68770 * 9 7 2 27 27 H 0.96995 * 119.99671 * 0.02562 * 1 2 3 28 28 H 1.09006 * 109.58718 * 113.84118 * 10 9 7 29 29 H 1.09003 * 109.70486 * 353.48481 * 10 9 7 30 30 H 1.08995 * 109.49614 * 185.41037 * 11 10 9 31 31 H 1.09001 * 109.51977 * 65.33116 * 11 10 9 32 32 H 1.08996 * 109.46440 * 301.35571 * 12 11 10 33 33 H 0.97006 * 119.99739 * 325.00484 * 13 12 11 34 34 H 1.09001 * 109.47113 * 59.99543 * 17 14 13 35 35 H 1.09006 * 109.47058 * 299.99958 * 17 14 13 36 36 H 1.09000 * 109.54007 * 302.97515 * 20 18 17 37 37 H 1.08994 * 109.54548 * 63.24957 * 20 18 17 38 38 H 1.08997 * 109.52214 * 297.06976 * 21 20 18 39 39 H 1.08998 * 109.57309 * 176.91706 * 21 20 18 40 40 H 1.09004 * 109.48304 * 182.40511 * 22 21 20 41 41 H 1.09004 * 109.49123 * 62.37840 * 22 21 20 42 42 H 1.08998 * 109.48194 * 178.86499 * 24 23 22 43 43 H 1.08991 * 109.48631 * 58.82118 * 24 23 22 44 44 H 1.09010 * 109.49576 * 58.58623 * 25 12 11 45 45 H 1.09001 * 109.50103 * 178.68016 * 25 12 11 46 46 H 1.09002 * 109.58671 * 246.16405 * 26 9 7 47 47 H 1.08999 * 109.58564 * 6.57962 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0534 -1.2234 0.2797 9 7 1.3725 -2.3612 -0.3530 10 6 1.8195 -3.6547 0.1814 11 6 2.0753 -4.6098 -0.9887 12 6 0.8199 -4.6899 -1.8603 13 7 1.0497 -5.6279 -2.9620 14 16 -0.1913 -6.5736 -3.5167 15 8 -0.7193 -7.1814 -2.3457 16 8 0.3975 -7.3561 -4.5464 17 6 -1.3813 -5.3954 -4.2142 18 6 -2.5887 -6.1562 -4.7658 19 1 -2.2511 -6.9050 -5.4823 20 6 -3.5391 -5.1748 -5.4587 21 6 -4.7797 -5.9349 -5.9379 22 6 -5.4346 -6.6323 -4.7428 23 8 -4.4878 -7.5068 -4.1257 24 6 -3.3283 -6.8450 -3.6159 25 6 0.5018 -3.3048 -2.4281 26 6 0.2282 -2.3349 -1.2744 27 1 -0.4849 0.8400 -0.0004 28 1 1.0470 -4.0691 0.8292 29 1 2.7394 -3.5192 0.7503 30 1 2.3147 -5.6010 -0.6035 31 1 2.9093 -4.2400 -1.5851 32 1 -0.0193 -5.0364 -1.2574 33 1 1.9288 -5.6951 -3.3664 34 1 -0.9071 -4.8332 -5.0186 35 1 -1.7106 -4.7075 -3.4353 36 1 -3.8370 -4.3974 -4.7551 37 1 -3.0363 -4.7220 -6.3131 38 1 -4.4873 -6.6791 -6.6786 39 1 -5.4868 -5.2355 -6.3839 40 1 -6.2936 -7.2097 -5.0848 41 1 -5.7633 -5.8847 -4.0208 42 1 -2.6698 -7.5757 -3.1462 43 1 -3.6292 -6.1002 -2.8793 44 1 1.3506 -2.9468 -3.0109 45 1 -0.3788 -3.3671 -3.0675 46 1 -0.6741 -2.6416 -0.7453 47 1 0.0988 -1.3265 -1.6675 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338985417.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:07:10 Heat of formation + Delta-G solvation = -111.937271 kcal Electronic energy + Delta-G solvation = -28156.154101 eV Core-core repulsion = 24273.027743 eV Total energy + Delta-G solvation = -3883.126358 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.71383 -38.14637 -37.07791 -35.99148 -34.97598 -34.69582 -32.50106 -31.96055 -30.14946 -29.20019 -27.61262 -25.36368 -24.91180 -22.98691 -22.23294 -21.99113 -20.53639 -19.73339 -19.11104 -17.69385 -16.99796 -16.65263 -16.51462 -16.26950 -15.96943 -15.22839 -15.01537 -14.77501 -14.60662 -14.00980 -13.79605 -13.70107 -13.27076 -13.16773 -13.06535 -12.99779 -12.92865 -12.55391 -12.09599 -12.04150 -11.97451 -11.72990 -11.54371 -11.46676 -11.39128 -11.12480 -11.06014 -10.80447 -10.75208 -10.61037 -10.41396 -10.27812 -10.24731 -9.88526 -9.76138 -9.67904 -9.09998 -8.53890 -6.77973 -5.87639 -3.29343 0.22334 2.72113 3.31658 3.40373 3.42207 3.52403 3.69761 4.06315 4.22233 4.40585 4.41920 4.43014 4.60017 4.74648 4.87044 5.01380 5.03624 5.14323 5.26111 5.31009 5.33111 5.38308 5.43772 5.47100 5.55143 5.56466 5.60491 5.64105 5.66795 5.77575 5.94319 5.96963 6.15149 6.32875 6.39842 6.48461 6.61792 6.72269 6.87314 6.90138 7.06333 7.24525 7.52018 7.72751 8.36116 9.12548 9.75674 10.31538 11.21268 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015499 B = 0.003301 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.148108 B = 8480.324845 C = 9585.842174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.252 4.252 8 H 0.067 0.933 9 N -0.592 5.592 10 C 0.145 3.855 11 C -0.133 4.133 12 C 0.150 3.850 13 N -1.113 6.113 14 S 2.606 3.394 15 O -0.954 6.954 16 O -0.966 6.966 17 C -0.629 4.629 18 C -0.111 4.111 19 H 0.092 0.908 20 C -0.110 4.110 21 C -0.158 4.158 22 C 0.054 3.946 23 O -0.375 6.375 24 C 0.039 3.961 25 C -0.163 4.163 26 C 0.170 3.830 27 H 0.254 0.746 28 H 0.022 0.978 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.086 0.914 33 H 0.414 0.586 34 H 0.139 0.861 35 H 0.141 0.859 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.095 0.905 41 H 0.054 0.946 42 H 0.110 0.890 43 H 0.066 0.934 44 H 0.065 0.935 45 H 0.050 0.950 46 H 0.021 0.979 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.773 -11.003 -11.348 17.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.196 4.196 3 Si 0.732 3.268 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.382 4.382 8 H 0.085 0.915 9 N -0.315 5.315 10 C 0.018 3.982 11 C -0.174 4.174 12 C 0.044 3.956 13 N -0.872 5.872 14 S 2.699 3.301 15 O -0.944 6.944 16 O -0.956 6.956 17 C -0.758 4.758 18 C -0.132 4.132 19 H 0.110 0.890 20 C -0.149 4.149 21 C -0.196 4.196 22 C -0.023 4.023 23 O -0.293 6.293 24 C -0.038 4.038 25 C -0.204 4.204 26 C 0.044 3.956 27 H 0.064 0.936 28 H 0.040 0.960 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.104 0.896 33 H 0.248 0.752 34 H 0.157 0.843 35 H 0.159 0.841 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.113 0.887 41 H 0.072 0.928 42 H 0.127 0.873 43 H 0.085 0.915 44 H 0.084 0.916 45 H 0.069 0.931 46 H 0.039 0.961 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.121 -11.989 -11.167 17.865 hybrid contribution 0.665 2.033 -0.471 2.190 sum -6.456 -9.957 -11.638 16.621 Atomic orbital electron populations 1.70035 1.05262 1.25475 1.53957 1.25037 0.95291 0.98456 1.00836 0.86232 0.79410 0.83889 0.77291 1.20235 1.21582 1.21694 1.19237 0.92814 0.84765 1.41378 0.91499 1.44089 1.35792 1.01528 1.50060 1.20913 0.98196 0.86590 0.92536 1.22285 0.96469 0.99971 0.98706 1.20959 0.99880 0.88391 0.86342 1.55701 1.25362 1.58568 1.47563 1.05018 0.75171 0.75218 0.74664 1.93597 1.80225 1.73443 1.47097 1.93586 1.75103 1.67022 1.59903 1.30804 1.13576 1.17575 1.13850 1.21558 0.94098 0.98273 0.99223 0.88983 1.21608 0.95214 0.97341 1.00736 1.22233 0.97960 1.00390 0.99014 1.22661 0.91699 0.94019 0.93909 1.87976 1.30609 1.34168 1.76545 1.23152 0.88081 0.98460 0.94136 1.22885 1.00736 0.95874 1.00873 1.20789 0.88891 0.98302 0.87645 0.93638 0.95965 0.92219 0.92162 0.91646 0.89582 0.75164 0.84260 0.84088 0.90884 0.90810 0.90842 0.90442 0.88693 0.92807 0.87261 0.91549 0.91618 0.93124 0.96094 0.88980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.03 11.19 55.49 0.62 -24.41 16 2 C 0.00 0.06 4.91 -17.43 -0.09 -0.02 16 3 Si 0.90 20.89 29.59 -169.99 -5.03 15.86 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 6 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.25 -6.59 9.59 -15.06 -0.14 -6.74 16 8 H 0.07 1.73 7.89 -52.49 -0.41 1.31 16 9 N -0.59 -13.88 2.99 -172.32 -0.52 -14.40 16 10 C 0.14 2.84 6.51 -3.71 -0.02 2.82 16 11 C -0.13 -2.13 5.61 -26.61 -0.15 -2.28 16 12 C 0.15 2.27 2.65 -67.89 -0.18 2.09 16 13 N -1.11 -14.10 5.36 -4.86 -0.03 -14.13 16 14 S 2.61 33.29 5.09 -107.50 -0.55 32.74 16 15 O -0.95 -14.75 15.19 -57.54 -0.87 -15.62 16 16 O -0.97 -14.62 18.08 -57.54 -1.04 -15.66 16 17 C -0.63 -6.27 4.64 37.16 0.17 -6.10 16 18 C -0.11 -1.13 2.39 -90.48 -0.22 -1.34 16 19 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 20 C -0.11 -0.94 5.31 -26.55 -0.14 -1.08 16 21 C -0.16 -1.21 6.14 -26.59 -0.16 -1.38 16 22 C 0.05 0.47 6.84 37.20 0.25 0.72 16 23 O -0.37 -4.44 10.77 -35.23 -0.38 -4.82 16 24 C 0.04 0.45 5.73 37.21 0.21 0.66 16 25 C -0.16 -2.67 5.65 -26.62 -0.15 -2.82 16 26 C 0.17 3.70 5.31 -3.71 -0.02 3.69 16 27 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 1.14 7.94 -51.93 -0.41 0.73 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.09 1.34 7.48 -51.93 -0.39 0.95 16 33 H 0.41 4.63 8.80 -34.46 -0.30 4.33 16 34 H 0.14 1.13 8.14 -51.92 -0.42 0.70 16 35 H 0.14 1.34 6.79 -51.92 -0.35 0.99 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.11 1.37 5.78 -51.93 -0.30 1.07 16 43 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.07 1.10 8.14 -51.92 -0.42 0.68 16 45 H 0.05 0.69 5.75 -51.93 -0.30 0.39 16 46 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 47 H 0.09 2.27 6.03 -51.93 -0.31 1.95 16 LS Contribution 369.62 15.07 5.57 5.57 Total: -1.00 -32.34 369.62 -10.69 -43.03 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -7.84 Total: 3.63 kcal Atomic # 6 Polarization: -11.16 SS G_CDS: -0.63 Total: -11.80 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: 0.08 Total: -52.94 kcal Atomic # 8 Polarization: -33.80 SS G_CDS: -2.29 Total: -36.10 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.03 Total: 15.86 kcal Atomic # 16 Polarization: 33.29 SS G_CDS: -0.55 Total: 32.74 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.34 -10.69 -43.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338985417.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.907 kcal (2) G-P(sol) polarization free energy of solvation -32.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds